Wall clock time and date at job start Tue Mar 31 2020 23:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.45203 * 109.47334 * 119.99695 * 2 1 3 5 5 C 1.34227 * 116.99924 * 270.00248 * 4 2 1 6 6 O 1.20820 * 120.00380 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99749 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47304 * 179.97438 * 7 5 4 9 9 C 1.38253 * 119.96552 * 269.72415 * 8 7 5 10 10 C 1.38211 * 120.07139 * 179.76275 * 9 8 7 11 11 C 1.38407 * 120.00069 * 0.51231 * 10 9 8 12 12 F 1.35101 * 120.04150 * 179.71800 * 11 10 9 13 13 C 1.38657 * 119.92869 * 359.74529 * 11 10 9 14 14 F 1.35101 * 120.03782 * 179.97438 * 13 11 10 15 15 C 1.38209 * 119.96441 * 89.99824 * 8 7 5 16 16 C 1.50704 * 109.47206 * 240.00015 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02174 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.02693 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47021 * 119.99380 * 25 23 21 28 28 H 1.48492 * 109.47081 * 239.99812 * 25 23 21 29 29 H 1.09004 * 109.46600 * 186.14251 * 1 2 3 30 30 H 1.08992 * 109.47503 * 66.14137 * 1 2 3 31 31 H 1.09002 * 109.47301 * 306.13413 * 1 2 3 32 32 H 1.08999 * 109.47335 * 299.99964 * 7 5 4 33 33 H 1.09000 * 109.47617 * 59.99719 * 7 5 4 34 34 H 1.08002 * 119.96419 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.00079 * 180.25144 * 10 9 8 36 36 H 1.08008 * 119.99940 * 359.95771 * 15 8 7 37 37 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 38 38 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 39 39 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 40 40 H 1.09007 * 109.47186 * 209.99873 * 20 18 16 41 41 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 42 42 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7194 -0.5769 3.5491 8 6 2.8623 0.4733 4.6205 9 6 4.0586 1.1502 4.7688 10 6 4.1905 2.1172 5.7474 11 6 3.1277 2.4015 6.5872 12 9 3.2576 3.3426 7.5477 13 6 1.9295 1.7189 6.4419 14 9 0.8908 1.9943 7.2607 15 6 1.7990 0.7548 5.4574 16 6 2.0323 -0.7104 -1.2305 17 8 2.4736 -1.8366 -1.1427 18 7 1.9913 -0.0942 -2.4283 19 6 1.5689 1.3058 -2.5178 20 6 2.3688 -0.8243 -3.6410 21 6 1.1505 -1.4919 -4.2252 22 1 0.1909 -1.3828 -3.7418 23 6 1.2610 -2.2419 -5.3769 24 7 2.4295 -2.3742 -5.9658 25 14 -0.2489 -3.0700 -6.1007 26 1 -1.4318 -2.7689 -5.2550 27 1 -0.4809 -2.5611 -7.4763 28 1 -0.0341 -4.5386 -6.1458 29 1 -0.3633 -1.0218 0.1100 30 1 -0.3634 0.4156 -0.9398 31 1 -0.3634 0.6060 0.8300 32 1 2.0106 -1.3371 3.8774 33 1 3.6885 -1.0398 3.3632 34 1 4.8897 0.9260 4.1165 35 1 5.1244 2.6481 5.8596 36 1 0.8661 0.2227 5.3429 37 1 2.4228 1.9558 -2.3268 38 1 1.1773 1.5042 -3.5155 39 1 0.7924 1.4991 -1.7777 40 1 2.7861 -0.1284 -4.3689 41 1 3.1136 -1.5804 -3.3928 42 1 2.5072 -2.9016 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756627839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:51 Heat of formation + Delta-G solvation = -180.466827 kcal Electronic energy + Delta-G solvation = -28812.560861 eV Core-core repulsion = 24201.300607 eV Total energy + Delta-G solvation = -4611.260254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.81975 -48.89601 -40.94194 -39.57690 -38.81034 -36.49371 -34.93873 -33.30133 -32.81905 -31.61964 -31.24561 -28.23813 -27.80749 -26.11498 -24.57430 -23.74256 -23.20118 -22.20778 -20.78100 -18.90217 -18.33753 -18.01968 -17.65530 -17.37984 -16.72893 -16.64227 -16.53887 -16.23375 -15.87610 -15.30434 -15.16243 -14.94116 -14.82819 -14.62068 -14.42842 -14.27130 -13.90629 -13.41558 -13.19371 -12.93824 -12.60244 -12.42725 -12.39830 -12.28151 -12.14744 -12.12086 -11.77439 -11.71562 -11.47747 -11.28227 -10.94538 -10.79299 -10.70016 -10.60626 -10.22005 -9.68661 -9.52228 -9.09743 -8.96456 -8.49864 -7.77286 -6.10625 -4.16025 0.40374 0.56081 2.02526 2.32768 2.98214 3.17897 3.25927 3.33962 3.35577 3.37763 3.83703 3.88701 3.99380 4.11170 4.38631 4.50584 4.59438 4.61193 4.80298 4.83261 4.99071 5.03693 5.06833 5.24097 5.26626 5.35336 5.42332 5.48541 5.54367 5.63033 5.67955 5.81796 5.83716 6.03546 6.19450 6.27443 6.35465 6.93711 7.34882 7.41692 7.59680 7.85325 8.14752 8.23917 8.78566 8.93741 9.49336 10.97486 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.001982 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.488052 B =14125.297587 C =14312.807847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.325 6.325 5 C 0.460 3.540 6 O -0.503 6.503 7 C -0.075 4.075 8 C -0.055 4.055 9 C -0.082 4.082 10 C -0.123 4.123 11 C 0.069 3.931 12 F -0.129 7.129 13 C 0.069 3.931 14 F -0.128 7.128 15 C -0.108 4.108 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 8.999 23.125 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.240 6.240 5 C 0.303 3.697 6 O -0.391 6.391 7 C -0.112 4.112 8 C -0.056 4.056 9 C -0.100 4.100 10 C -0.142 4.142 11 C 0.049 3.951 12 F -0.108 7.108 13 C 0.049 3.951 14 F -0.107 7.107 15 C -0.127 4.127 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.071 4.071 20 C 0.126 3.874 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.512 8.712 23.008 24.648 hybrid contribution -1.104 0.025 -0.271 1.137 sum 0.408 8.737 22.737 24.361 Atomic orbital electron populations 1.22162 0.92061 1.04157 1.03848 1.22694 0.96086 0.97355 0.82601 0.87930 1.86623 1.76355 1.41431 1.19570 1.23483 0.74729 0.85988 0.85519 1.90683 1.47754 1.16443 1.84223 1.20299 1.05918 0.97180 0.87830 1.19178 0.93447 0.97364 0.95585 1.21011 0.97703 0.94301 0.96966 1.21065 0.98377 0.99359 0.95356 1.17733 0.94492 0.91604 0.91281 1.91536 1.96253 1.62026 1.60943 1.17584 0.84332 0.99462 0.93746 1.91542 1.55809 1.92829 1.70489 1.20944 1.00339 0.97258 0.94179 1.19752 0.80229 0.86835 0.83791 1.90695 1.45209 1.18392 1.85338 1.48083 1.65218 1.11923 1.07728 1.21838 0.99001 0.82635 1.03586 1.19381 0.96727 0.92083 0.79166 1.21455 0.94784 1.31384 1.09177 0.92306 1.24946 0.96285 0.96138 0.96745 1.69943 1.23159 1.40418 1.19659 0.86425 0.82753 0.79387 0.78755 1.19780 1.20923 1.20819 0.90592 0.89440 0.91278 0.85904 0.85652 0.83894 0.83358 0.83490 0.93402 0.90040 0.92253 0.94612 0.93547 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.19 37.16 0.34 -1.89 16 2 C 0.07 1.12 2.14 -27.88 -0.06 1.06 16 3 H 0.10 1.48 6.31 -51.93 -0.33 1.16 16 4 O -0.32 -4.87 9.47 -45.74 -0.43 -5.30 16 5 C 0.46 5.51 7.92 36.01 0.29 5.80 16 6 O -0.50 -7.01 15.25 -18.75 -0.29 -7.30 16 7 C -0.07 -0.55 5.94 -29.03 -0.17 -0.73 16 8 C -0.06 -0.43 4.37 -104.63 -0.46 -0.89 16 9 C -0.08 -0.57 9.69 -39.59 -0.38 -0.96 16 10 C -0.12 -0.89 10.02 -39.53 -0.40 -1.29 16 11 C 0.07 0.64 7.31 -39.36 -0.29 0.35 16 12 F -0.13 -1.33 17.18 2.25 0.04 -1.29 16 13 C 0.07 0.66 7.31 -39.36 -0.29 0.37 16 14 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 15 C -0.11 -0.89 9.68 -39.53 -0.38 -1.27 16 16 C 0.51 10.53 6.95 -10.99 -0.08 10.46 16 17 O -0.52 -13.03 16.13 -13.54 -0.22 -13.25 16 18 N -0.60 -12.32 2.86 -182.95 -0.52 -12.84 16 19 C 0.07 1.12 9.79 59.85 0.59 1.71 16 20 C 0.25 6.25 5.18 -5.20 -0.03 6.22 16 21 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 22 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 25 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.15 6.33 -51.93 -0.33 0.82 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.12 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.13 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 39 H 0.06 0.76 4.92 -51.93 -0.26 0.50 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -34.87 374.47 -6.81 -41.68 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.05 Total: -2.73 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.74 Total: 5.66 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.21 Total: -38.12 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.94 Total: -25.85 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.87 -6.81 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756627839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.782 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds