Wall clock time and date at job start Tue Mar 31 2020 23:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00015 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00060 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47097 * 90.00063 * 9 7 5 11 11 H 1.48492 * 109.47152 * 209.99999 * 9 7 5 12 12 H 1.48506 * 109.46886 * 330.00287 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 C 1.50693 * 109.47486 * 179.72204 * 19 17 16 21 21 C 1.38257 * 119.96320 * 269.72376 * 20 19 17 22 22 C 1.38221 * 120.07250 * 179.76648 * 21 20 19 23 23 C 1.38411 * 119.99216 * 0.50897 * 22 21 20 24 24 F 1.35104 * 120.03046 * 179.72262 * 23 22 21 25 25 C 1.38644 * 119.93397 * 359.74290 * 23 22 21 26 26 F 1.35105 * 120.03562 * 180.02562 * 25 23 22 27 27 C 1.38211 * 119.96760 * 89.99761 * 20 19 17 28 28 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 29 29 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 30 30 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 32 32 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 33 33 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 34 34 H 1.08995 * 109.46943 * 150.00511 * 4 3 2 35 35 H 0.96998 * 120.00204 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 37 37 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 38 38 H 1.09004 * 109.46801 * 299.72165 * 19 17 16 39 39 H 1.09000 * 109.47461 * 59.71633 * 19 17 16 40 40 H 1.08002 * 119.96709 * 0.02562 * 21 20 19 41 41 H 1.07999 * 120.00047 * 180.25186 * 22 21 20 42 42 H 1.08004 * 119.99923 * 359.95574 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 5.3917 2.1840 -3.2569 9 14 3.0132 3.4358 -3.9289 10 1 3.1158 4.8560 -3.5071 11 1 3.4068 3.3135 -5.3554 12 1 1.6136 2.9691 -3.7597 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 6 2.1556 1.8085 7.2752 21 6 0.8999 1.8576 7.8516 22 6 0.6404 1.1466 9.0082 23 6 1.6413 0.3928 9.5962 24 9 1.3901 -0.2979 10.7298 25 6 2.9020 0.3478 9.0211 26 9 3.8804 -0.3877 9.5931 27 6 3.1571 1.0567 7.8600 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 5.7177 2.5744 -4.0828 36 1 2.6212 0.4188 2.5302 37 1 0.9432 1.0128 2.5298 38 1 3.4828 2.8774 5.9907 39 1 1.8042 3.4693 5.9821 40 1 0.1196 2.4487 7.3954 41 1 -0.3421 1.1825 9.4552 42 1 4.1387 1.0221 7.4108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756630443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:04 Heat of formation + Delta-G solvation = -179.112933 kcal Electronic energy + Delta-G solvation = -28517.775248 eV Core-core repulsion = 23906.573703 eV Total energy + Delta-G solvation = -4611.201545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.81878 -48.89417 -40.88323 -39.55135 -38.94421 -36.52311 -35.47005 -33.24235 -32.79599 -31.27847 -30.52100 -29.61116 -28.18056 -26.81518 -23.76070 -23.12472 -23.06346 -22.23052 -20.95350 -18.77781 -18.32576 -18.00101 -17.68951 -17.39322 -17.04571 -16.71902 -16.65632 -16.60973 -16.04009 -15.33000 -15.29463 -15.02762 -14.87775 -14.70007 -14.37470 -14.10651 -13.77732 -13.61565 -13.45956 -12.99428 -12.72514 -12.59864 -12.50288 -12.33292 -12.26454 -12.18986 -11.88430 -11.72222 -11.51382 -11.07665 -10.96159 -10.76196 -10.65859 -10.55701 -10.21481 -9.60468 -9.52898 -9.18920 -9.08680 -8.63679 -7.87808 -6.13272 -4.12864 0.39260 0.55351 1.99020 2.26732 2.95683 3.10352 3.25741 3.31536 3.33476 3.35205 3.71824 3.87507 3.98371 4.09520 4.35082 4.49011 4.59381 4.62413 4.72413 4.81743 5.02994 5.03893 5.09723 5.19793 5.24813 5.27252 5.35429 5.42386 5.44651 5.52409 5.60765 5.82291 5.88358 6.05728 6.20918 6.29547 6.30619 6.61003 6.84972 7.18979 7.52915 7.55196 8.05450 8.39970 8.75720 8.89992 9.46054 10.99938 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023289 B = 0.001986 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.000259 B =14093.529936 C =14386.460781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.328 6.328 17 C 0.461 3.539 18 O -0.503 6.503 19 C -0.074 4.074 20 C -0.056 4.056 21 C -0.082 4.082 22 C -0.124 4.124 23 C 0.069 3.931 24 F -0.129 7.129 25 C 0.070 3.930 26 F -0.128 7.128 27 C -0.108 4.108 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -2.591 22.929 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.242 6.242 17 C 0.304 3.696 18 O -0.391 6.391 19 C -0.112 4.112 20 C -0.056 4.056 21 C -0.100 4.100 22 C -0.142 4.142 23 C 0.049 3.951 24 F -0.108 7.108 25 C 0.050 3.950 26 F -0.106 7.106 27 C -0.127 4.127 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.113 -2.332 22.833 25.500 hybrid contribution -0.307 -0.093 -0.409 0.520 sum -11.420 -2.426 22.424 25.281 Atomic orbital electron populations 1.22243 0.96463 1.01910 1.02309 1.21548 0.93664 0.83546 1.03530 1.47881 1.64147 1.13553 1.06485 1.19708 0.97556 0.93427 0.79503 1.21304 0.95236 1.33181 1.07288 0.90699 1.24859 0.95021 0.95770 0.97338 1.69890 1.15103 1.44819 1.23552 0.86847 0.81395 0.81618 0.79802 1.19845 1.21027 1.19060 1.19712 0.79458 0.87126 0.84312 1.90717 1.44313 1.17567 1.86741 1.22947 1.02823 0.92657 0.84180 1.86552 1.78526 1.44908 1.14263 1.23489 0.74643 0.86946 0.84565 1.90706 1.41930 1.19818 1.86665 1.20290 1.06868 0.97770 0.86223 1.19173 0.93513 0.97584 0.95370 1.20989 0.96271 0.98346 0.94439 1.21057 0.99067 0.97249 0.96857 1.17734 0.93515 0.97755 0.86095 1.91538 1.94544 1.77193 1.47478 1.17589 0.85018 0.97236 0.95191 1.91548 1.60470 1.74682 1.83900 1.20977 1.01417 0.96403 0.93867 0.93055 0.91950 0.91663 0.89142 0.91384 0.94869 0.94400 0.92485 0.88405 0.88598 0.85753 0.85667 0.83958 0.83389 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.10 1.48 5.93 -4.04 -0.02 1.45 16 3 N -0.59 -11.51 2.46 -175.05 -0.43 -11.94 16 4 C 0.22 5.13 4.23 -5.19 -0.02 5.11 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.23 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 C 0.51 10.05 7.75 -10.99 -0.09 9.96 16 14 O -0.52 -12.50 16.08 -14.10 -0.23 -12.73 16 15 C 0.05 0.76 4.50 36.01 0.16 0.92 16 16 O -0.33 -4.76 9.75 -45.90 -0.45 -5.21 16 17 C 0.46 5.35 7.95 36.00 0.29 5.64 16 18 O -0.50 -6.88 15.78 -18.76 -0.30 -7.17 16 19 C -0.07 -0.53 5.94 -29.04 -0.17 -0.70 16 20 C -0.06 -0.43 4.37 -104.63 -0.46 -0.89 16 21 C -0.08 -0.54 9.70 -39.58 -0.38 -0.93 16 22 C -0.12 -0.86 10.02 -39.52 -0.40 -1.26 16 23 C 0.07 0.64 7.31 -39.37 -0.29 0.35 16 24 F -0.13 -1.32 17.18 2.25 0.04 -1.28 16 25 C 0.07 0.68 7.31 -39.37 -0.29 0.39 16 26 F -0.13 -1.40 17.18 2.25 0.04 -1.36 16 27 C -0.11 -0.91 9.68 -39.53 -0.38 -1.29 16 28 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.34 7.39 -51.93 -0.38 0.95 16 37 H 0.10 1.20 7.18 -51.93 -0.37 0.82 16 38 H 0.12 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.13 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -35.93 374.23 -6.84 -42.77 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.15 Total: -2.60 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.11 Total: 3.88 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.34 Total: -38.33 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.97 Total: -25.12 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.93 -6.84 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756630443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.340 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds