Wall clock time and date at job start Tue Mar 31 2020 23:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46956 * 2 1 4 4 C 1.46498 * 119.99963 * 269.99661 * 3 2 1 5 5 C 1.50705 * 109.47158 * 269.99935 * 4 3 2 6 6 H 1.07992 * 119.99837 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99953 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99799 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47458 * 89.99452 * 9 7 5 11 11 H 1.48503 * 109.46730 * 209.99982 * 9 7 5 12 12 H 1.48497 * 109.46863 * 329.99585 * 9 7 5 13 13 C 1.34778 * 120.00366 * 89.99772 * 3 2 1 14 14 O 1.21278 * 120.00490 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99450 * 359.97438 * 13 3 2 16 16 O 1.45204 * 109.46598 * 180.02562 * 15 13 3 17 17 C 1.34235 * 116.99554 * 179.97438 * 16 15 13 18 18 O 1.20821 * 120.00312 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99791 * 179.97438 * 17 16 15 20 20 C 1.50701 * 109.47139 * 180.02562 * 19 17 16 21 21 C 1.38425 * 120.02136 * 90.00372 * 20 19 17 22 22 F 1.35101 * 120.01402 * 359.70506 * 21 20 19 23 23 C 1.38476 * 119.97328 * 179.97438 * 21 20 19 24 24 C 1.38207 * 120.02410 * 0.02562 * 23 21 20 25 25 C 1.38207 * 120.05360 * 359.97438 * 24 23 21 26 26 C 1.38412 * 120.02814 * 269.98005 * 20 19 17 27 27 F 1.35096 * 120.01191 * 0.02562 * 26 20 19 28 28 H 1.09010 * 109.46842 * 60.00738 * 1 2 3 29 29 H 1.09005 * 109.47038 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47566 * 300.00472 * 1 2 3 31 31 H 1.09000 * 109.47794 * 239.99857 * 2 1 3 32 32 H 1.08995 * 109.46918 * 119.99721 * 2 1 3 33 33 H 1.09001 * 109.47320 * 29.99677 * 4 3 2 34 34 H 1.09004 * 109.47181 * 149.99903 * 4 3 2 35 35 H 0.97005 * 120.00106 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47150 * 60.00154 * 15 13 3 37 37 H 1.09003 * 109.47375 * 299.99605 * 15 13 3 38 38 H 1.09008 * 109.46849 * 60.00775 * 19 17 16 39 39 H 1.09006 * 109.47704 * 300.00617 * 19 17 16 40 40 H 1.08001 * 119.98752 * 179.97438 * 23 21 20 41 41 H 1.08000 * 119.97200 * 180.02562 * 24 23 21 42 42 H 1.07995 * 119.99247 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2577 9 14 3.0129 3.4351 -3.9293 10 1 3.1162 4.8554 -3.5083 11 1 3.4059 3.3118 -5.3560 12 1 1.6132 2.9690 -3.7594 13 6 2.2429 2.0167 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9911 1.3064 2.4723 16 8 2.3051 2.1963 3.5759 17 6 2.1330 1.7129 4.8163 18 8 1.7337 0.5836 4.9747 19 6 2.4390 2.5784 6.0114 20 6 2.1647 1.8049 7.2753 21 6 3.1685 1.0495 7.8566 22 9 4.3930 1.0006 7.2878 23 6 2.9156 0.3395 9.0182 24 6 1.6613 0.3844 9.5969 25 6 0.6583 1.1383 9.0175 26 6 0.9091 1.8495 7.8560 27 9 -0.0715 2.5863 7.2897 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 5.7173 2.5731 -4.0836 36 1 2.6210 0.4188 2.5302 37 1 0.9430 1.0127 2.5298 38 1 1.8100 3.4684 5.9860 39 1 3.4879 2.8740 5.9871 40 1 3.6985 -0.2503 9.4717 41 1 1.4650 -0.1693 10.5032 42 1 -0.3216 1.1724 9.4703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756631902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:07 Heat of formation + Delta-G solvation = -177.512777 kcal Electronic energy + Delta-G solvation = -29161.308555 eV Core-core repulsion = 24550.176398 eV Total energy + Delta-G solvation = -4611.132157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.41030 -49.38099 -40.71910 -39.35989 -38.91454 -36.50084 -35.42514 -33.58330 -32.76817 -30.73633 -30.48803 -29.64608 -28.34699 -26.81671 -23.32763 -23.27446 -23.05775 -22.24026 -20.91036 -18.73939 -18.53711 -18.00751 -17.84747 -17.06043 -16.85907 -16.58295 -16.42990 -16.18465 -15.98420 -15.82365 -15.64702 -15.15721 -14.81919 -14.77997 -14.12583 -14.02159 -13.60266 -13.56888 -13.19367 -13.12143 -12.71853 -12.57803 -12.42501 -12.35184 -12.22786 -12.04405 -11.85851 -11.81896 -11.47764 -11.03856 -10.91850 -10.73010 -10.60795 -10.52600 -10.18395 -9.57198 -9.41361 -9.18118 -9.12312 -8.60707 -7.83638 -6.10323 -4.09707 0.44799 0.53896 2.05753 2.34519 2.95110 3.15195 3.28306 3.34095 3.36156 3.44198 3.75389 3.88635 3.95314 4.17211 4.32801 4.37965 4.66767 4.68553 4.77971 4.91823 5.04371 5.08136 5.14993 5.22838 5.29505 5.33710 5.40207 5.47221 5.48622 5.56289 5.64849 5.68996 5.92117 6.09130 6.24669 6.31584 6.34421 6.64577 6.88672 7.23338 7.56877 7.60271 8.09555 8.43335 8.80298 8.93233 9.49130 11.02950 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.002328 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.780948 B =12024.190768 C =12425.356919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.517 6.517 15 C 0.051 3.949 16 O -0.326 6.326 17 C 0.466 3.534 18 O -0.505 6.505 19 C -0.075 4.075 20 C -0.148 4.148 21 C 0.147 3.853 22 F -0.125 7.125 23 C -0.164 4.164 24 C -0.057 4.057 25 C -0.164 4.164 26 C 0.146 3.854 27 F -0.126 7.126 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -5.035 26.122 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.241 6.241 17 C 0.308 3.692 18 O -0.393 6.393 19 C -0.112 4.112 20 C -0.150 4.150 21 C 0.127 3.873 22 F -0.103 7.103 23 C -0.183 4.183 24 C -0.076 4.076 25 C -0.183 4.183 26 C 0.126 3.874 27 F -0.105 7.105 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.516 -4.684 25.901 28.344 hybrid contribution -0.419 0.366 -0.962 1.111 sum -10.935 -4.318 24.939 27.572 Atomic orbital electron populations 1.22247 0.96478 1.01892 1.02326 1.21543 0.93659 0.83559 1.03508 1.47871 1.64223 1.13549 1.06455 1.19708 0.97545 0.93442 0.79510 1.21312 0.95259 1.33139 1.07242 0.90692 1.24854 0.95023 0.95768 0.97327 1.69894 1.15123 1.44854 1.23551 0.86847 0.81414 0.81638 0.79774 1.19845 1.21029 1.19054 1.19704 0.79440 0.87118 0.84289 1.90717 1.44228 1.17576 1.86731 1.22953 1.02821 0.92681 0.84180 1.86548 1.78466 1.44879 1.14163 1.23364 0.74461 0.86812 0.84548 1.90672 1.42149 1.19752 1.86683 1.20086 1.07085 0.98010 0.86015 1.19283 0.93351 1.03634 0.98751 1.17187 0.80231 0.97006 0.92834 1.91560 1.40002 1.94596 1.84166 1.21217 0.99300 1.01958 0.95778 1.20888 0.91192 0.96265 0.99210 1.21201 1.01738 0.99601 0.95771 1.17166 0.84248 0.93028 0.92911 1.91544 1.60286 1.74324 1.84323 0.91951 0.91670 0.93041 0.89139 0.91400 0.94862 0.94401 0.92507 0.88392 0.88607 0.85572 0.85479 0.83699 0.83693 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.10 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -12.06 2.46 -175.06 -0.43 -12.49 16 4 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 13 C 0.51 10.68 7.75 -10.98 -0.09 10.60 16 14 O -0.52 -13.12 16.08 -14.10 -0.23 -13.34 16 15 C 0.05 0.83 4.50 36.01 0.16 1.00 16 16 O -0.33 -5.47 9.76 -45.92 -0.45 -5.92 16 17 C 0.47 6.73 7.95 36.00 0.29 7.01 16 18 O -0.50 -8.06 15.78 -18.75 -0.30 -8.35 16 19 C -0.07 -0.80 5.59 -29.04 -0.16 -0.97 16 20 C -0.15 -1.53 4.39 -104.49 -0.46 -1.99 16 21 C 0.15 1.44 7.24 -39.42 -0.29 1.15 16 22 F -0.12 -1.38 16.48 2.25 0.04 -1.34 16 23 C -0.16 -1.15 10.03 -39.50 -0.40 -1.55 16 24 C -0.06 -0.32 10.04 -39.60 -0.40 -0.72 16 25 C -0.16 -1.13 10.03 -39.50 -0.40 -1.52 16 26 C 0.15 1.39 7.24 -39.43 -0.29 1.10 16 27 F -0.13 -1.32 16.48 2.25 0.04 -1.28 16 28 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 33 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 34 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 35 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.10 1.48 7.39 -51.93 -0.38 1.09 16 37 H 0.10 1.35 7.18 -51.93 -0.37 0.97 16 38 H 0.13 1.14 7.64 -51.92 -0.40 0.74 16 39 H 0.13 1.20 7.64 -51.93 -0.40 0.80 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -36.43 372.15 -6.85 -43.28 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.11 Total: -1.75 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.12 Total: 5.62 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.34 Total: -39.33 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.97 Total: -27.62 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.07 Total: -2.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.43 -6.85 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756631902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.235 kcal (2) G-P(sol) polarization free energy of solvation -36.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds