Wall clock time and date at job start Tue Mar 31 2020 23:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 O 1.45202 * 109.47179 * 120.00383 * 2 1 3 5 5 C 1.34233 * 116.99710 * 269.99958 * 4 2 1 6 6 O 1.20827 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99707 * 180.02562 * 5 4 2 8 8 C 1.50704 * 109.46759 * 180.02562 * 7 5 4 9 9 C 1.38423 * 120.02054 * 269.72727 * 8 7 5 10 10 F 1.35097 * 120.01683 * 359.97206 * 9 8 7 11 11 C 1.38474 * 119.96746 * 179.70576 * 9 8 7 12 12 C 1.38204 * 120.02998 * 0.58794 * 11 9 8 13 13 C 1.38210 * 120.05100 * 359.68435 * 12 11 9 14 14 C 1.38414 * 120.02912 * 89.99967 * 8 7 5 15 15 F 1.35104 * 120.00917 * 359.97438 * 14 8 7 16 16 C 1.50702 * 109.46657 * 240.00222 * 2 1 3 17 17 O 1.21288 * 119.99618 * 254.97181 * 16 2 1 18 18 N 1.34775 * 120.00189 * 74.97721 * 16 2 1 19 19 C 1.46497 * 119.99963 * 4.86595 * 18 16 2 20 20 C 1.46501 * 119.99706 * 184.87417 * 18 16 2 21 21 C 1.50702 * 109.47099 * 90.00044 * 20 18 16 22 22 H 1.08001 * 120.00233 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99731 * 180.02562 * 21 20 18 24 24 N 1.31514 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46922 * 59.99977 * 25 23 21 27 27 H 1.48495 * 109.47289 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47456 * 300.00085 * 25 23 21 29 29 H 1.09001 * 109.46880 * 176.95877 * 1 2 3 30 30 H 1.08995 * 109.46824 * 296.95084 * 1 2 3 31 31 H 1.09000 * 109.47314 * 56.95462 * 1 2 3 32 32 H 1.09000 * 109.47073 * 299.99513 * 7 5 4 33 33 H 1.08990 * 109.47106 * 60.00171 * 7 5 4 34 34 H 1.08007 * 119.98346 * 180.31751 * 11 9 8 35 35 H 1.07994 * 119.97731 * 179.70700 * 12 11 9 36 36 H 1.07993 * 119.99195 * 179.97438 * 13 12 11 37 37 H 1.09005 * 109.46906 * 84.70121 * 19 18 16 38 38 H 1.09001 * 109.47437 * 204.70010 * 19 18 16 39 39 H 1.08999 * 109.47366 * 324.70337 * 19 18 16 40 40 H 1.09007 * 109.46581 * 209.99402 * 20 18 16 41 41 H 1.08996 * 109.47020 * 329.99272 * 20 18 16 42 42 H 0.96999 * 119.99900 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2503 7 6 2.7194 -0.5772 3.5491 8 6 2.8611 0.4728 4.6208 9 6 4.0579 1.1520 4.7710 10 9 5.0997 0.8736 3.9572 11 6 4.1849 2.1209 5.7521 12 6 3.1215 2.4013 6.5891 13 6 1.9279 1.7198 6.4438 14 6 1.7966 0.7548 5.4594 15 9 0.6296 0.0890 5.3171 16 6 2.0323 -0.7104 -1.2305 17 8 2.4912 -1.8294 -1.1398 18 7 1.9716 -0.1022 -2.4317 19 6 1.5174 1.2873 -2.5271 20 6 2.3598 -0.8307 -3.6420 21 6 1.1542 -1.5290 -4.2165 22 1 0.1948 -1.4394 -3.7286 23 6 1.2762 -2.2830 -5.3643 24 7 2.4445 -2.3925 -5.9581 25 14 -0.2181 -3.1491 -6.0760 26 1 -1.2575 -2.1444 -6.4156 27 1 0.1754 -3.8875 -7.3028 28 1 -0.7602 -4.1035 -5.0758 29 1 -0.3633 -1.0262 -0.0545 30 1 -0.3633 0.4658 0.9160 31 1 -0.3634 0.5604 -0.8614 32 1 2.0106 -1.3374 3.8773 33 1 3.6885 -1.0401 3.3631 34 1 5.1170 2.6547 5.8662 35 1 3.2231 3.1538 7.3571 36 1 1.0977 1.9394 7.0986 37 1 2.3568 1.9575 -2.3417 38 1 1.1187 1.4716 -3.5247 39 1 0.7387 1.4667 -1.7858 40 1 2.7578 -0.1299 -4.3760 41 1 3.1227 -1.5683 -3.3931 42 1 2.5302 -2.9227 -6.7658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756636873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:56 Heat of formation + Delta-G solvation = -178.015919 kcal Electronic energy + Delta-G solvation = -29481.901322 eV Core-core repulsion = 24870.747347 eV Total energy + Delta-G solvation = -4611.153975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.39909 -49.37253 -40.79102 -39.35758 -38.79060 -36.46967 -34.89074 -33.60129 -32.81569 -31.58801 -30.72794 -28.48353 -27.76464 -26.08945 -24.54325 -23.32429 -23.31651 -22.25266 -20.72730 -18.85713 -18.54769 -18.03455 -17.81455 -16.87632 -16.54447 -16.41354 -16.25249 -16.04928 -15.94318 -15.69116 -15.63694 -15.00388 -14.81012 -14.63192 -14.32484 -14.04364 -13.72618 -13.18508 -13.12225 -13.05448 -12.65915 -12.43131 -12.31741 -12.18656 -12.07482 -12.03326 -11.83848 -11.69758 -11.40006 -11.23196 -10.93363 -10.73847 -10.65901 -10.54841 -10.18283 -9.68399 -9.39647 -9.17289 -8.91980 -8.45657 -7.72783 -6.06718 -4.12187 0.45994 0.54759 2.09199 2.40651 2.97292 3.23197 3.30868 3.35417 3.39202 3.45089 3.87614 3.91256 3.96264 4.18259 4.33631 4.41957 4.66070 4.69022 4.85884 4.93064 5.03427 5.05250 5.11538 5.27698 5.32845 5.41311 5.46891 5.48683 5.57219 5.69750 5.69968 5.73993 5.86278 6.07513 6.25036 6.29058 6.40061 6.98153 7.39322 7.45810 7.65459 7.89050 8.18821 8.28520 8.82868 8.97944 9.52857 11.01375 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.002338 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.523262 B =11974.506640 C =12366.914421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.323 6.323 5 C 0.465 3.535 6 O -0.505 6.505 7 C -0.075 4.075 8 C -0.147 4.147 9 C 0.147 3.853 10 F -0.125 7.125 11 C -0.164 4.164 12 C -0.058 4.058 13 C -0.164 4.164 14 C 0.146 3.854 15 F -0.127 7.127 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.246 3.754 21 C -0.530 4.530 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 11.492 26.156 28.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.238 6.238 5 C 0.307 3.693 6 O -0.393 6.393 7 C -0.113 4.113 8 C -0.149 4.149 9 C 0.127 3.873 10 F -0.103 7.103 11 C -0.182 4.182 12 C -0.076 4.076 13 C -0.183 4.183 14 C 0.126 3.874 15 F -0.105 7.105 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.329 5.329 19 C -0.071 4.071 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.510 11.111 25.914 28.200 hybrid contribution -0.923 -0.444 -0.781 1.288 sum -0.413 10.668 25.133 27.306 Atomic orbital electron populations 1.22169 0.92047 1.04391 1.03522 1.22695 0.96086 0.97373 0.82626 0.87970 1.86614 1.76337 1.41330 1.19489 1.23362 0.74512 0.85938 0.85440 1.90655 1.47961 1.16391 1.84252 1.20090 1.06192 0.97128 0.87852 1.19286 0.93558 1.02137 0.99956 1.17187 0.83760 0.95832 0.90523 1.91558 1.55470 1.92399 1.70915 1.21214 1.01587 0.98976 0.96466 1.20884 0.91096 0.97843 0.97768 1.21198 1.00141 0.97427 0.99531 1.17163 0.81107 0.93073 0.96025 1.91544 1.45190 1.78692 1.95057 1.19747 0.80310 0.86742 0.83775 1.90699 1.44702 1.18752 1.85407 1.48072 1.64490 1.12800 1.07577 1.21861 0.98783 0.82915 1.03573 1.19370 0.96651 0.92039 0.79224 1.21385 0.95252 1.30785 1.09469 0.92408 1.24939 0.96228 0.96190 0.96696 1.69922 1.23129 1.40463 1.19715 0.86539 0.82646 0.79764 0.78367 1.20218 1.21138 1.20129 0.90593 0.91324 0.89442 0.85640 0.85548 0.83717 0.83703 0.83757 0.93434 0.90033 0.92201 0.94610 0.93567 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.29 37.16 0.35 -2.08 16 2 C 0.07 1.22 2.14 -27.88 -0.06 1.16 16 3 H 0.10 1.64 6.39 -51.93 -0.33 1.31 16 4 O -0.32 -5.57 9.46 -45.78 -0.43 -6.00 16 5 C 0.47 6.89 7.92 36.01 0.29 7.17 16 6 O -0.50 -8.20 15.25 -18.75 -0.29 -8.49 16 7 C -0.08 -0.83 5.59 -29.03 -0.16 -0.99 16 8 C -0.15 -1.54 4.39 -104.49 -0.46 -2.00 16 9 C 0.15 1.45 7.24 -39.43 -0.29 1.17 16 10 F -0.13 -1.41 16.47 2.25 0.04 -1.37 16 11 C -0.16 -1.17 10.02 -39.51 -0.40 -1.57 16 12 C -0.06 -0.33 10.04 -39.60 -0.40 -0.73 16 13 C -0.16 -1.14 10.03 -39.50 -0.40 -1.53 16 14 C 0.15 1.40 7.24 -39.43 -0.29 1.11 16 15 F -0.13 -1.32 16.48 2.25 0.04 -1.29 16 16 C 0.51 11.19 6.97 -10.99 -0.08 11.12 16 17 O -0.52 -13.70 16.12 -13.62 -0.22 -13.92 16 18 N -0.60 -12.90 2.86 -182.95 -0.52 -13.43 16 19 C 0.07 1.17 9.85 59.85 0.59 1.76 16 20 C 0.25 6.47 5.17 -5.19 -0.03 6.44 16 21 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 22 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 25 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.18 6.02 -51.93 -0.31 0.87 16 32 H 0.13 1.15 7.64 -51.93 -0.40 0.75 16 33 H 0.13 1.23 7.63 -51.93 -0.40 0.84 16 34 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 39 H 0.06 0.81 4.70 -51.93 -0.24 0.57 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -35.52 372.09 -6.79 -42.31 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.98 Total: -1.80 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.75 Total: 7.42 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.21 Total: -39.23 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.94 Total: -28.41 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.52 -6.79 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756636873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.706 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds