Wall clock time and date at job start Tue Mar 31 2020 23:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42897 * 109.47358 * 2 1 4 4 C 1.42894 * 114.00631 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47525 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00430 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.40101 * 120.00056 * 180.02562 * 7 5 4 9 9 C 1.34774 * 120.00275 * 180.02562 * 8 7 5 10 10 O 1.21589 * 120.00341 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99562 * 0.26698 * 9 8 7 12 12 C 1.40135 * 119.99846 * 175.34244 * 11 9 8 13 13 C 1.38697 * 120.07550 * 34.56772 * 12 11 9 14 14 C 1.38200 * 120.01788 * 179.76673 * 13 12 11 15 15 C 1.38540 * 120.17642 * 0.51821 * 14 13 12 16 16 F 1.35102 * 119.92651 * 179.76314 * 15 14 13 17 17 C 1.38344 * 120.15281 * 359.74131 * 15 14 13 18 18 C 1.38741 * 119.97630 * 359.97438 * 17 15 14 19 19 O 1.35777 * 120.09096 * 180.02562 * 18 17 15 20 20 C 1.34807 * 116.99668 * 5.45643 * 19 18 17 21 21 H 1.08001 * 120.00457 * 354.95549 * 20 19 18 22 22 C 1.38639 * 120.00165 * 174.95233 * 20 19 18 23 23 N 1.31574 * 119.99625 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00081 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47483 * 60.00194 * 24 22 20 26 26 H 1.48506 * 109.47156 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47161 * 299.99646 * 24 22 20 28 28 H 1.09004 * 109.47751 * 59.99997 * 1 2 3 29 29 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47417 * 299.99886 * 1 2 3 31 31 H 1.09003 * 109.47417 * 240.00114 * 2 1 3 32 32 H 1.09003 * 109.47081 * 120.00339 * 2 1 3 33 33 H 1.09004 * 109.46820 * 60.00124 * 4 3 2 34 34 H 1.09003 * 109.47141 * 300.00773 * 4 3 2 35 35 H 0.96996 * 119.99881 * 359.97438 * 7 5 4 36 36 H 0.97005 * 119.99776 * 359.97438 * 8 7 5 37 37 H 0.96995 * 119.99756 * 355.33917 * 11 9 8 38 38 H 1.07998 * 119.98751 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.91148 * 180.23341 * 14 13 12 40 40 H 1.08000 * 120.01563 * 180.02562 * 17 15 14 41 41 H 0.96998 * 119.99950 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8193 2.9161 0.0012 6 8 2.9609 3.7729 0.0016 7 7 5.1209 3.2663 0.0013 8 7 5.4821 4.6199 0.0023 9 6 6.7836 4.9701 0.0019 10 8 7.0971 6.1449 0.0024 11 7 7.7376 4.0180 -0.0050 12 6 9.0878 4.3798 -0.1040 13 6 9.5398 5.5481 0.4913 14 6 10.8726 5.9013 0.3970 15 6 11.7586 5.0964 -0.3005 16 9 13.0595 5.4490 -0.3935 17 6 11.3145 3.9323 -0.9016 18 6 9.9790 3.5686 -0.8060 19 8 9.5407 2.4263 -1.3946 20 6 10.4724 1.6327 -1.9598 21 1 11.5022 1.9552 -2.0032 22 6 10.1086 0.4024 -2.4855 23 7 8.8540 0.0097 -2.4331 24 14 11.3997 -0.6975 -3.2680 25 1 12.4413 -1.0305 -2.2632 26 1 10.7589 -1.9473 -3.7502 27 1 12.0254 0.0111 -4.4133 28 1 -0.3635 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8339 0.9765 -0.8892 34 1 3.8332 0.9766 0.8908 35 1 5.8074 2.5811 0.0013 36 1 4.7955 5.3051 0.0026 37 1 7.4895 3.0825 0.0586 38 1 8.8508 6.1798 1.0322 39 1 11.2234 6.8095 0.8644 40 1 12.0072 3.3063 -1.4445 41 1 8.5994 -0.8509 -2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757683419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:37 Heat of formation + Delta-G solvation = -107.786278 kcal Electronic energy + Delta-G solvation = -29046.634176 eV Core-core repulsion = 24458.445549 eV Total energy + Delta-G solvation = -4588.188627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.32559 -40.77606 -39.78774 -38.82623 -37.86139 -36.52352 -35.65580 -34.15330 -32.50974 -32.07676 -31.13700 -29.51053 -28.35059 -27.34616 -25.61170 -23.06495 -22.93770 -22.05372 -21.48178 -20.73685 -19.17113 -18.45289 -18.08946 -17.59578 -16.85141 -16.74182 -16.58287 -16.10393 -15.69569 -15.32386 -15.23545 -15.07650 -14.90045 -14.73893 -14.41037 -14.30447 -13.75451 -13.62364 -13.40399 -13.32367 -13.16330 -12.70759 -12.50303 -12.26687 -11.79893 -11.73886 -11.54463 -11.53909 -11.32692 -11.04576 -10.85545 -10.65555 -10.38327 -10.04196 -9.97995 -9.90659 -9.66087 -9.05424 -8.47515 -7.97827 -7.24745 -6.71879 -4.29012 1.58890 1.76097 2.02913 2.28661 2.96325 3.01181 3.01726 3.03788 3.21457 3.47109 3.76924 4.22916 4.25151 4.75389 4.75659 4.80122 4.85601 4.92142 4.94172 5.00231 5.01916 5.09592 5.38364 5.48296 5.63721 5.65877 5.85272 5.90064 6.02271 6.26371 6.37758 6.48913 6.73508 6.79710 6.82879 6.88367 6.91483 7.11428 7.22519 7.54281 7.65818 7.73403 8.18106 8.53436 8.75397 9.34632 10.45373 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.003332 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.573512 B = 8402.151300 C =11458.743989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.054 3.946 5 C 0.519 3.481 6 O -0.518 6.518 7 N -0.526 5.526 8 N -0.528 5.528 9 C 0.713 3.287 10 O -0.564 6.564 11 N -0.660 5.660 12 C 0.070 3.930 13 C -0.047 4.047 14 C -0.227 4.227 15 C 0.132 3.868 16 F -0.150 7.150 17 C -0.257 4.257 18 C 0.160 3.840 19 O -0.169 6.169 20 C -0.392 4.392 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.862 5.862 24 Si 0.942 3.058 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.427 0.573 36 H 0.442 0.558 37 H 0.405 0.595 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.144 0.856 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 -2.514 5.585 10.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.028 4.028 5 C 0.304 3.696 6 O -0.391 6.391 7 N -0.280 5.280 8 N -0.286 5.286 9 C 0.413 3.587 10 O -0.438 6.438 11 N -0.309 5.309 12 C -0.025 4.025 13 C -0.068 4.068 14 C -0.248 4.248 15 C 0.112 3.888 16 F -0.129 7.129 17 C -0.278 4.278 18 C 0.103 3.897 19 O -0.072 6.072 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.160 4.160 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.269 0.731 36 H 0.288 0.712 37 H 0.242 0.758 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.162 0.838 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.907 -1.285 5.453 10.523 hybrid contribution 1.120 -1.360 -0.551 1.846 sum -7.787 -2.645 4.902 9.574 Atomic orbital electron populations 1.21732 0.93370 1.02295 1.03422 1.22581 0.95913 0.82977 1.00643 1.87983 1.18010 1.26811 1.95566 1.22003 0.84413 0.92385 1.03950 1.20416 0.80721 0.91507 0.76967 1.90756 1.48653 1.51451 1.48256 1.44797 1.08118 0.97795 1.77296 1.44494 1.06304 0.96258 1.81500 1.15658 0.79300 0.85316 0.78381 1.90991 1.78131 1.16145 1.58484 1.42135 1.04016 1.09052 1.75736 1.16607 0.81397 0.98856 1.05624 1.20684 0.94507 0.94810 0.96755 1.20503 0.93200 1.02613 1.08448 1.17475 0.77625 0.94662 0.99004 1.91420 1.34772 1.91960 1.94742 1.20853 0.96749 0.99748 1.10421 1.18776 0.90938 0.89014 0.90933 1.83905 1.35602 1.26342 1.61360 1.21314 0.90224 0.98031 1.37243 0.88821 1.25250 0.97571 0.96300 0.96878 1.69969 1.16043 1.21161 1.42461 0.85744 0.79334 0.78796 0.79483 1.19317 1.20173 1.19354 0.91671 0.90891 0.91735 0.92753 0.92916 0.88918 0.89359 0.73095 0.71158 0.75819 0.83857 0.85753 0.83836 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.15 0.38 -0.72 16 2 C 0.06 0.45 6.66 37.15 0.25 0.70 16 3 O -0.37 -4.27 9.88 -55.14 -0.54 -4.81 16 4 C 0.05 0.52 6.42 36.00 0.23 0.75 16 5 C 0.52 6.62 8.02 -10.99 -0.09 6.53 16 6 O -0.52 -8.60 16.34 -14.35 -0.23 -8.84 16 7 N -0.53 -6.36 6.26 31.22 0.20 -6.17 16 8 N -0.53 -7.48 6.26 27.64 0.17 -7.30 16 9 C 0.71 11.93 8.52 -86.91 -0.74 11.19 16 10 O -0.56 -10.87 14.59 5.29 0.08 -10.79 16 11 N -0.66 -11.22 5.15 -14.07 -0.07 -11.30 16 12 C 0.07 1.36 6.33 -83.43 -0.53 0.83 16 13 C -0.05 -0.86 8.69 -39.43 -0.34 -1.20 16 14 C -0.23 -4.01 10.02 -39.48 -0.40 -4.40 16 15 C 0.13 2.51 7.29 -39.43 -0.29 2.22 16 16 F -0.15 -2.75 17.26 2.25 0.04 -2.71 16 17 C -0.26 -5.30 9.14 -39.36 -0.36 -5.66 16 18 C 0.16 3.45 6.66 -38.94 -0.26 3.19 16 19 O -0.17 -4.10 9.32 0.03 0.00 -4.10 16 20 C -0.39 -9.71 9.49 30.88 0.29 -9.42 16 21 H 0.09 2.19 5.20 -52.49 -0.27 1.92 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -21.68 13.67 55.48 0.76 -20.92 16 24 Si 0.94 18.61 29.55 -169.99 -5.02 13.59 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.43 4.48 6.71 -182.60 -1.23 3.25 16 36 H 0.44 6.19 8.10 -182.59 -1.48 4.71 16 37 H 0.41 6.26 6.50 -40.82 -0.27 5.99 16 38 H 0.14 2.53 6.19 -52.49 -0.32 2.21 16 39 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 40 H 0.14 2.95 5.64 -52.49 -0.30 2.66 16 41 H 0.27 6.35 8.31 -40.82 -0.34 6.02 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -31.22 364.33 -7.47 -38.68 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.38 Total: 14.16 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.94 Total: 5.02 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.05 Total: -45.69 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.70 Total: -28.54 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.22 -7.47 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757683419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.102 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds