Wall clock time and date at job start Tue Mar 31 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47015 * 2 1 4 4 C 1.46500 * 120.00093 * 270.00009 * 3 2 1 5 5 C 1.50699 * 109.47063 * 269.99978 * 4 3 2 6 6 H 1.08006 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99911 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00167 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47429 * 89.99760 * 9 7 5 11 11 H 1.48502 * 109.47105 * 210.00098 * 9 7 5 12 12 H 1.48501 * 109.47216 * 329.99863 * 9 7 5 13 13 C 1.34774 * 119.99710 * 90.00124 * 3 2 1 14 14 O 1.21286 * 119.99832 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00554 * 359.97438 * 13 3 2 16 16 O 1.45199 * 109.47705 * 179.97438 * 15 13 3 17 17 C 1.34725 * 117.00093 * 179.97438 * 16 15 13 18 18 O 1.21487 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.47567 * 120.00017 * 179.97438 * 17 16 15 20 20 C 1.39718 * 120.16197 * 0.21822 * 19 17 16 21 21 C 1.38051 * 119.84862 * 180.27342 * 20 19 17 22 22 F 1.35094 * 119.91469 * 179.74723 * 21 20 19 23 23 C 1.38670 * 120.16917 * 359.76161 * 21 20 19 24 24 C 1.50699 * 119.83226 * 179.97438 * 23 21 20 25 25 C 1.38183 * 120.32840 * 0.02562 * 23 21 20 26 26 C 1.38304 * 120.15305 * 359.97210 * 25 23 21 27 27 F 1.35104 * 120.09020 * 180.02562 * 26 25 23 28 28 H 1.09006 * 109.47269 * 299.99686 * 1 2 3 29 29 H 1.08997 * 109.46997 * 59.99771 * 1 2 3 30 30 H 1.08994 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47447 * 240.00093 * 2 1 3 32 32 H 1.08997 * 109.47700 * 119.99973 * 2 1 3 33 33 H 1.08997 * 109.47059 * 30.00005 * 4 3 2 34 34 H 1.09006 * 109.46935 * 150.00095 * 4 3 2 35 35 H 0.97001 * 120.00581 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46973 * 59.99806 * 15 13 3 37 37 H 1.09002 * 109.47126 * 300.00333 * 15 13 3 38 38 H 1.08000 * 120.07608 * 0.02562 * 20 19 17 39 39 H 1.09001 * 109.47299 * 270.02161 * 24 23 21 40 40 H 1.08999 * 109.47497 * 30.02928 * 24 23 21 41 41 H 1.09003 * 109.47027 * 150.02893 * 24 23 21 42 42 H 1.07998 * 119.92395 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0966 -3.4170 10 1 5.9761 0.8761 -4.2606 11 1 6.3929 3.2642 -4.1992 12 1 6.7735 1.9156 -2.2201 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 8 2.3064 2.1956 3.5760 17 6 2.1339 1.7104 4.8210 18 8 1.7316 0.5752 4.9801 19 6 2.4347 2.5574 5.9913 20 6 2.8943 3.8647 5.8122 21 6 3.1791 4.6495 6.9116 22 9 3.6283 5.9120 6.7400 23 6 3.0054 4.1453 8.1916 24 6 3.3192 5.0085 9.3864 25 6 2.5472 2.8549 8.3771 26 6 2.2577 2.0569 7.2852 27 9 1.8092 0.7956 7.4680 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1412 -1.1383 35 1 3.6756 3.5178 -4.4430 36 1 2.6211 0.4186 2.5303 37 1 0.9432 1.0125 2.5299 38 1 3.0302 4.2589 4.8159 39 1 4.3629 4.8716 9.6695 40 1 3.1452 6.0546 9.1346 41 1 2.6765 4.7235 10.2194 42 1 2.4147 2.4687 9.3769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758082787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:35 Heat of formation + Delta-G solvation = -182.533140 kcal Electronic energy + Delta-G solvation = -29061.707107 eV Core-core repulsion = 24450.357250 eV Total energy + Delta-G solvation = -4611.349856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.30036 -49.28916 -40.73805 -39.34374 -38.77578 -36.45271 -35.34099 -33.65233 -32.85919 -30.71729 -30.21349 -29.47451 -28.16069 -26.50640 -23.74755 -23.48686 -23.08769 -22.47205 -21.21833 -18.94004 -18.55912 -17.74513 -17.55423 -17.05952 -16.86783 -16.49806 -16.32311 -16.17209 -15.76591 -15.68963 -15.23088 -14.77492 -14.60458 -14.53522 -14.20839 -13.84044 -13.67978 -13.52263 -13.39131 -13.14908 -12.96055 -12.59919 -12.50476 -12.21475 -12.08157 -11.97224 -11.89607 -11.66034 -11.25872 -10.97027 -10.92040 -10.75652 -10.65577 -10.55175 -10.16766 -9.68545 -9.65811 -9.04985 -9.02658 -8.46741 -7.78954 -6.07758 -4.12746 -0.02842 0.49481 2.07649 2.20938 2.98573 3.20473 3.28849 3.35807 3.40513 3.56502 3.59870 3.79346 3.97112 4.15036 4.40636 4.44992 4.57924 4.81404 4.88425 5.00770 5.04660 5.13015 5.16090 5.23386 5.27027 5.33510 5.39441 5.44500 5.52691 5.56134 5.65425 5.70832 5.97049 6.15141 6.17342 6.21947 6.42673 6.96176 7.36621 7.42677 7.51705 7.88088 8.17924 8.25680 8.80775 8.95903 9.52420 11.00420 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.002596 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.420308 B =10783.865800 C =12119.073109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.508 3.492 18 O -0.492 6.492 19 C -0.138 4.138 20 C -0.059 4.059 21 C 0.076 3.924 22 F -0.126 7.126 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.144 4.144 26 C 0.161 3.839 27 F -0.109 7.109 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 -1.662 24.764 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.237 6.237 17 C 0.352 3.648 18 O -0.380 6.380 19 C -0.140 4.140 20 C -0.078 4.078 21 C 0.056 3.944 22 F -0.104 7.104 23 C -0.057 4.057 24 C -0.177 4.177 25 C -0.163 4.163 26 C 0.141 3.859 27 F -0.087 7.087 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.186 0.814 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.062 -1.277 24.564 24.930 hybrid contribution 0.878 -0.448 -0.561 1.134 sum -3.183 -1.724 24.003 24.274 Atomic orbital electron populations 1.22233 0.96481 1.01747 1.02430 1.21523 0.93796 0.83902 1.03093 1.48211 1.63718 1.13430 1.07096 1.19343 0.96509 0.93715 0.77503 1.21419 0.96825 1.32115 1.06386 0.92389 1.24929 0.97932 0.94829 0.96354 1.69924 1.35737 1.33280 1.14344 0.86483 0.84563 0.77694 0.78615 1.20624 1.21053 1.19859 1.19661 0.79784 0.87151 0.84231 1.90717 1.44569 1.17454 1.86723 1.23047 1.02975 0.92600 0.84021 1.86576 1.78536 1.44775 1.13790 1.20676 0.75248 0.85434 0.83449 1.90904 1.41781 1.18644 1.86702 1.18917 1.09646 0.95176 0.90298 1.21529 0.94052 0.91522 1.00678 1.17311 1.02818 0.81181 0.93047 1.91547 1.86590 1.36181 1.96093 1.20046 0.96593 0.94604 0.94423 1.20877 1.03143 0.99292 0.94433 1.20824 1.03447 0.93148 0.98892 1.17606 0.95851 0.80490 0.91969 1.91629 1.85442 1.35866 1.95755 0.93123 0.91762 0.91851 0.89353 0.91717 0.94587 0.93670 0.92646 0.88377 0.88446 0.81386 0.89653 0.90195 0.90139 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -12.23 2.46 -175.06 -0.43 -12.66 16 4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.56 7.75 -10.99 -0.09 10.48 16 14 O -0.52 -13.09 16.08 -14.11 -0.23 -13.32 16 15 C 0.05 0.82 4.51 36.01 0.16 0.98 16 16 O -0.32 -5.29 9.01 -47.24 -0.43 -5.72 16 17 C 0.51 7.53 7.89 34.54 0.27 7.81 16 18 O -0.49 -8.00 15.13 -19.26 -0.29 -8.30 16 19 C -0.14 -1.68 5.88 -104.93 -0.62 -2.29 16 20 C -0.06 -0.65 9.59 -39.10 -0.38 -1.03 16 21 C 0.08 0.73 7.23 -39.49 -0.29 0.44 16 22 F -0.13 -1.29 16.45 2.25 0.04 -1.25 16 23 C -0.06 -0.41 5.89 -104.48 -0.62 -1.03 16 24 C -0.12 -0.56 9.82 36.00 0.35 -0.21 16 25 C -0.14 -1.07 9.66 -39.58 -0.38 -1.45 16 26 C 0.16 1.70 7.29 -38.95 -0.28 1.42 16 27 F -0.11 -1.33 15.55 2.25 0.04 -1.29 16 28 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 1.42 7.40 -51.93 -0.38 1.04 16 37 H 0.10 1.35 7.18 -51.93 -0.37 0.98 16 38 H 0.17 1.96 7.61 -52.49 -0.40 1.56 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.39 7.63 -51.93 -0.40 -0.01 16 41 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 42 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -34.16 374.22 -7.03 -41.20 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.14 Total: -3.11 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.95 Total: 7.67 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.31 Total: -38.21 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.94 Total: -27.34 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.16 -7.03 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758082787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.337 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds