Wall clock time and date at job start Tue Mar 31 2020 23:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.47077 * 2 1 4 4 O 1.45200 * 109.47017 * 119.99267 * 2 1 3 5 5 C 1.34775 * 117.00451 * 270.00470 * 4 2 1 6 6 O 1.21505 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.47506 * 120.00311 * 179.97438 * 5 4 2 8 8 C 1.40064 * 119.90538 * 179.97438 * 7 5 4 9 9 C 1.36293 * 120.10644 * 180.25254 * 8 7 5 10 10 C 1.40908 * 119.89254 * 359.46388 * 9 8 7 11 11 C 1.41088 * 120.09495 * 180.27280 * 10 9 8 12 12 H 1.08001 * 119.99725 * 204.80825 * 11 10 9 13 13 C 1.40247 * 120.00397 * 24.80243 * 11 10 9 14 14 N 1.30631 * 119.99564 * 17.73594 * 13 11 10 15 15 Si 1.86799 * 120.00020 * 197.72827 * 13 11 10 16 16 H 1.48495 * 109.47149 * 60.00407 * 15 13 11 17 17 H 1.48502 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47209 * 300.00247 * 15 13 11 19 19 C 1.40897 * 119.80612 * 0.53470 * 10 9 8 20 20 C 1.36305 * 119.89582 * 359.74047 * 19 10 9 21 21 C 1.50692 * 109.47353 * 239.99615 * 2 1 3 22 22 O 1.21268 * 120.00050 * 244.99728 * 21 2 1 23 23 N 1.34777 * 120.00075 * 65.00263 * 21 2 1 24 24 C 1.38936 * 120.00051 * 180.02562 * 23 21 2 25 25 N 1.32404 * 119.20747 * 359.72046 * 24 23 21 26 26 C 1.32277 * 120.75421 * 179.76276 * 25 24 23 27 27 C 1.38607 * 119.18210 * 0.51025 * 26 25 24 28 28 C 1.38617 * 118.53569 * 359.74653 * 27 26 25 29 29 N 1.32267 * 119.18668 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47435 * 300.00694 * 1 2 3 31 31 H 1.08996 * 109.46550 * 60.00522 * 1 2 3 32 32 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.94709 * 359.97438 * 8 7 5 34 34 H 1.08000 * 120.05677 * 179.72191 * 9 8 7 35 35 H 0.97002 * 119.99556 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.05601 * 179.71371 * 19 10 9 37 37 H 1.07997 * 119.95268 * 179.97438 * 20 19 10 38 38 H 0.97001 * 120.00127 * 359.97438 * 23 21 2 39 39 H 1.08000 * 120.40800 * 180.23644 * 26 25 24 40 40 H 1.08004 * 120.73203 * 179.77189 * 27 26 25 41 41 H 1.08002 * 120.40294 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 1.1856 5 6 2.2179 0.0672 2.2856 6 8 1.9977 1.2618 2.2546 7 6 2.7084 -0.5603 3.5272 8 6 2.9201 0.2228 4.6690 9 6 3.3780 -0.3519 5.8169 10 6 3.6278 -1.7380 5.8570 11 6 4.0965 -2.3383 7.0447 12 1 4.6565 -3.2607 6.9990 13 6 3.8353 -1.7373 8.2847 14 7 2.8912 -0.8406 8.3898 15 14 4.8373 -2.2192 9.7857 16 1 6.2715 -1.9239 9.5391 17 1 4.3676 -1.4459 10.9634 18 1 4.6688 -3.6711 10.0482 19 6 3.4135 -2.5219 4.7061 20 6 2.9607 -1.9377 3.5608 21 6 2.0324 -0.7104 -1.2303 22 8 2.6531 -1.7465 -1.1213 23 7 1.7921 -0.1943 -2.4519 24 6 2.2548 -0.8496 -3.5863 25 7 2.9350 -1.9772 -3.4488 26 6 3.3857 -2.6287 -4.5081 27 6 3.1472 -2.1115 -5.7717 28 6 2.4362 -0.9263 -5.8786 29 7 2.0101 -0.3282 -4.7786 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.7243 1.2845 4.6385 34 1 3.5452 0.2535 6.6955 35 1 2.7103 -0.4252 9.2475 36 1 3.6080 -3.5840 4.7310 37 1 2.7965 -2.5376 2.6780 38 1 1.2954 0.6343 -2.5392 39 1 3.9367 -3.5500 -4.3896 40 1 3.5069 -2.6208 -6.6535 41 1 2.2329 -0.4965 -6.8484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758679321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:03 Heat of formation + Delta-G solvation = -33.799796 kcal Electronic energy + Delta-G solvation = -27643.863457 eV Core-core repulsion = 23489.652349 eV Total energy + Delta-G solvation = -4154.211108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58490 -40.21777 -39.14654 -37.45811 -35.78681 -35.25889 -33.98965 -33.97865 -32.35309 -30.80632 -30.15016 -29.53339 -26.28414 -25.52648 -24.95907 -23.80602 -22.32986 -21.18085 -20.65758 -19.87321 -18.94591 -17.92340 -17.59060 -17.13840 -16.68343 -16.18915 -16.04482 -15.83339 -15.42537 -15.29811 -14.89241 -14.51956 -14.11253 -13.95504 -13.76203 -13.57438 -13.15832 -12.95726 -12.71342 -12.38802 -12.21960 -12.02106 -11.63908 -11.43939 -11.36347 -11.25905 -11.24657 -11.14721 -11.03090 -10.69771 -10.49662 -10.15827 -9.94744 -9.60262 -9.52199 -9.39249 -9.24578 -9.04286 -7.75260 -7.64651 -7.10363 -4.68440 0.60148 0.82033 1.97488 2.05880 2.37690 2.87313 2.92097 2.95297 3.04308 3.28126 3.57873 3.60193 3.70176 3.80901 4.09135 4.32517 4.45287 4.54643 4.79992 4.81540 4.84586 4.94713 5.26637 5.40940 5.51720 5.59617 5.67120 5.86235 6.00630 6.16139 6.22661 6.27143 6.62136 6.73714 6.75822 6.81430 6.91690 7.04847 7.06748 7.41427 7.61426 7.76565 7.79291 7.85893 7.96827 8.00772 8.35198 8.55853 8.64159 8.69737 9.80811 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025939 B = 0.001987 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.205197 B =14087.425170 C =14894.357824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.111 0.889 4 O -0.331 6.331 5 C 0.515 3.485 6 O -0.549 6.549 7 C -0.275 4.275 8 C -0.031 4.031 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.433 4.433 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.763 5.763 15 Si 0.917 3.083 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.240 4.240 20 C -0.025 4.025 21 C 0.511 3.489 22 O -0.436 6.436 23 N -0.640 5.640 24 C 0.541 3.459 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.267 4.267 28 C 0.178 3.822 29 N -0.551 5.551 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.424 0.576 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 0.356 -20.893 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.129 0.871 4 O -0.248 6.248 5 C 0.368 3.632 6 O -0.443 6.443 7 C -0.277 4.277 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.459 4.459 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.385 5.385 15 Si 0.740 3.260 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.259 4.259 20 C -0.043 4.043 21 C 0.295 3.705 22 O -0.300 6.300 23 N -0.292 5.292 24 C 0.186 3.814 25 N -0.223 5.223 26 C 0.011 3.989 27 C -0.291 4.291 28 C 0.011 3.989 29 N -0.272 5.272 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.262 0.738 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.498 0.559 -19.654 19.820 hybrid contribution 0.294 -0.003 -0.317 0.433 sum -2.203 0.556 -19.971 20.100 Atomic orbital electron populations 1.22164 0.91943 1.04047 1.04027 1.22078 0.95777 0.97503 0.82941 0.87100 1.86764 1.78104 1.41094 1.18864 1.21729 0.73660 0.84825 0.82963 1.90689 1.52791 1.16467 1.84359 1.18150 1.23953 0.94653 0.90959 1.20438 0.95252 0.97786 0.91540 1.20972 1.07355 0.94998 0.97079 1.17861 0.85633 0.91681 0.91983 1.19914 1.28078 1.07639 0.90299 0.89441 1.26177 0.93829 0.93443 1.01602 1.69733 1.21819 1.19078 1.27873 0.86207 0.80927 0.79978 0.78895 1.18340 1.19940 1.18550 1.20732 1.12075 0.98417 0.94670 1.20609 0.93894 0.93004 0.96819 1.20670 0.80529 0.86141 0.83184 1.90865 1.33732 1.20531 1.84825 1.43196 1.55682 1.27326 1.02984 1.19444 0.89206 0.87200 0.85600 1.68538 1.12217 1.07518 1.34076 1.23289 0.91168 0.97359 0.87037 1.22788 1.05615 1.00236 1.00443 1.22974 0.89108 0.90565 0.96235 1.67793 1.25688 1.35727 0.98009 0.89929 0.90700 0.90832 0.88000 0.85901 0.89888 0.88138 0.87669 0.73811 0.81063 0.83348 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.50 37.16 0.35 -1.58 16 2 C 0.08 1.15 2.98 -27.88 -0.08 1.06 16 3 H 0.11 1.57 7.16 -51.93 -0.37 1.20 16 4 O -0.33 -6.52 8.65 -47.37 -0.41 -6.93 16 5 C 0.52 11.33 7.86 34.51 0.27 11.60 16 6 O -0.55 -12.39 15.58 -19.27 -0.30 -12.69 16 7 C -0.27 -6.53 5.89 -104.75 -0.62 -7.14 16 8 C -0.03 -0.76 9.52 -39.60 -0.38 -1.14 16 9 C -0.18 -4.68 8.63 -39.27 -0.34 -5.02 16 10 C 0.13 3.36 5.57 -106.80 -0.60 2.77 16 11 C -0.43 -10.63 9.04 -37.75 -0.34 -10.97 16 12 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 13 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 14 N -0.76 -18.23 10.95 55.56 0.61 -17.62 16 15 Si 0.92 17.06 29.60 -169.99 -5.03 12.03 16 16 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 17 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 C -0.24 -5.74 9.73 -39.27 -0.38 -6.12 16 20 C -0.02 -0.57 9.55 -39.59 -0.38 -0.95 16 21 C 0.51 7.67 7.14 -10.99 -0.08 7.60 16 22 O -0.44 -8.31 14.71 -14.04 -0.21 -8.52 16 23 N -0.64 -7.56 5.36 -13.07 -0.07 -7.63 16 24 C 0.54 6.90 8.38 -322.26 -2.70 4.20 16 25 N -0.50 -6.96 7.87 -13.83 -0.11 -7.07 16 26 C 0.18 1.69 11.30 -17.22 -0.19 1.50 16 27 C -0.27 -1.77 10.16 -39.31 -0.40 -2.17 16 28 C 0.18 1.30 11.30 -17.22 -0.19 1.11 16 29 N -0.55 -5.80 10.46 -13.83 -0.14 -5.95 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 34 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 35 H 0.29 6.22 8.29 -40.82 -0.34 5.89 16 36 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.11 2.27 7.59 -52.49 -0.40 1.88 16 38 H 0.42 3.55 8.60 -40.82 -0.35 3.19 16 39 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.15 0.47 8.06 -52.48 -0.42 0.04 16 41 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -32.73 365.99 -10.63 -43.36 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.34 Total: 9.18 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -6.15 Total: -3.68 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.28 Total: -38.27 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.92 Total: -28.14 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.73 -10.63 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.561 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds