Wall clock time and date at job start Tue Mar 31 2020 23:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.47077 * 2 1 4 4 O 1.45200 * 109.47017 * 119.99267 * 2 1 3 5 5 C 1.34775 * 117.00451 * 270.00470 * 4 2 1 6 6 O 1.21505 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.47506 * 120.00311 * 179.97438 * 5 4 2 8 8 C 1.40064 * 119.90538 * 179.97438 * 7 5 4 9 9 C 1.36293 * 120.10644 * 180.25254 * 8 7 5 10 10 C 1.40908 * 119.89254 * 359.46388 * 9 8 7 11 11 C 1.41088 * 120.09495 * 180.27280 * 10 9 8 12 12 H 1.08001 * 119.99725 * 204.80825 * 11 10 9 13 13 C 1.40247 * 120.00397 * 24.80243 * 11 10 9 14 14 N 1.30631 * 119.99564 * 17.73594 * 13 11 10 15 15 Si 1.86799 * 120.00020 * 197.72827 * 13 11 10 16 16 H 1.48495 * 109.47149 * 60.00407 * 15 13 11 17 17 H 1.48502 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47209 * 300.00247 * 15 13 11 19 19 C 1.40897 * 119.80612 * 0.53470 * 10 9 8 20 20 C 1.36305 * 119.89582 * 359.74047 * 19 10 9 21 21 C 1.50692 * 109.47353 * 239.99615 * 2 1 3 22 22 O 1.21268 * 120.00050 * 244.99728 * 21 2 1 23 23 N 1.34777 * 120.00075 * 65.00263 * 21 2 1 24 24 C 1.38936 * 120.00051 * 180.02562 * 23 21 2 25 25 N 1.32404 * 119.20747 * 359.72046 * 24 23 21 26 26 C 1.32277 * 120.75421 * 179.76276 * 25 24 23 27 27 C 1.38607 * 119.18210 * 0.51025 * 26 25 24 28 28 C 1.38617 * 118.53569 * 359.74653 * 27 26 25 29 29 N 1.32267 * 119.18668 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47435 * 300.00694 * 1 2 3 31 31 H 1.08996 * 109.46550 * 60.00522 * 1 2 3 32 32 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.94709 * 359.97438 * 8 7 5 34 34 H 1.08000 * 120.05677 * 179.72191 * 9 8 7 35 35 H 0.97002 * 119.99556 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.05601 * 179.71371 * 19 10 9 37 37 H 1.07997 * 119.95268 * 179.97438 * 20 19 10 38 38 H 0.97001 * 120.00127 * 359.97438 * 23 21 2 39 39 H 1.08000 * 120.40800 * 180.23644 * 26 25 24 40 40 H 1.08004 * 120.73203 * 179.77189 * 27 26 25 41 41 H 1.08002 * 120.40294 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6843 1.1856 5 6 2.2179 0.0672 2.2856 6 8 1.9977 1.2618 2.2546 7 6 2.7084 -0.5603 3.5272 8 6 2.9201 0.2228 4.6690 9 6 3.3780 -0.3519 5.8169 10 6 3.6278 -1.7380 5.8570 11 6 4.0965 -2.3383 7.0447 12 1 4.6565 -3.2607 6.9990 13 6 3.8353 -1.7373 8.2847 14 7 2.8912 -0.8406 8.3898 15 14 4.8373 -2.2192 9.7857 16 1 6.2715 -1.9239 9.5391 17 1 4.3676 -1.4459 10.9634 18 1 4.6688 -3.6711 10.0482 19 6 3.4135 -2.5219 4.7061 20 6 2.9607 -1.9377 3.5608 21 6 2.0324 -0.7104 -1.2303 22 8 2.6531 -1.7465 -1.1213 23 7 1.7921 -0.1943 -2.4519 24 6 2.2548 -0.8496 -3.5863 25 7 2.9350 -1.9772 -3.4488 26 6 3.3857 -2.6287 -4.5081 27 6 3.1472 -2.1115 -5.7717 28 6 2.4362 -0.9263 -5.8786 29 7 2.0101 -0.3282 -4.7786 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.7243 1.2845 4.6385 34 1 3.5452 0.2535 6.6955 35 1 2.7103 -0.4252 9.2475 36 1 3.6080 -3.5840 4.7310 37 1 2.7965 -2.5376 2.6780 38 1 1.2954 0.6343 -2.5392 39 1 3.9367 -3.5500 -4.3896 40 1 3.5069 -2.6208 -6.6535 41 1 2.2329 -0.4965 -6.8484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758679321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:02 Heat of formation + Delta-G solvation = -50.797715 kcal Electronic energy + Delta-G solvation = -27644.600542 eV Core-core repulsion = 23489.652349 eV Total energy + Delta-G solvation = -4154.948193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.44292 -41.58442 -40.46456 -39.25578 -37.36715 -36.30352 -35.78563 -34.73643 -33.47555 -32.10335 -31.60123 -31.32369 -28.05664 -26.54709 -25.69606 -24.93094 -23.84502 -22.95688 -21.95459 -21.45072 -19.87997 -19.42583 -19.15834 -18.46395 -17.86699 -17.33477 -17.21997 -16.98653 -16.75788 -16.62757 -15.93897 -15.75013 -15.47792 -15.29729 -15.16568 -14.74855 -14.36408 -14.34362 -14.09030 -14.06508 -13.74559 -13.49203 -13.21785 -12.86383 -12.83640 -12.65034 -12.40404 -12.17556 -12.14408 -11.94658 -11.90902 -11.85216 -11.43585 -11.32474 -11.16437 -11.03154 -10.06618 -9.82564 -9.65573 -9.54825 -8.86324 -6.56811 -0.14916 0.16964 0.20430 0.96213 1.12577 1.29854 1.36467 1.41432 1.52805 1.85384 1.97911 2.14308 2.66254 2.85304 2.98625 3.23784 3.60419 3.66419 3.70345 3.79663 3.82067 4.06680 4.25497 4.33752 4.38157 4.40833 4.57971 4.58631 4.82772 4.91263 4.94055 4.96311 5.00729 5.12871 5.18914 5.29796 5.45353 5.53615 5.74847 5.81446 5.90407 5.96013 6.05529 6.13537 6.47176 6.68342 6.75758 6.80017 6.94352 7.17258 8.08358 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025939 B = 0.001987 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.205197 B =14087.425170 C =14894.357824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 H 0.121 0.879 4 O -0.343 6.343 5 C 0.523 3.477 6 O -0.559 6.559 7 C -0.292 4.292 8 C -0.037 4.037 9 C -0.201 4.201 10 C 0.105 3.895 11 C -0.456 4.456 12 H 0.095 0.905 13 C 0.034 3.966 14 N -0.791 5.791 15 Si 0.993 3.007 16 H -0.257 1.257 17 H -0.264 1.264 18 H -0.254 1.254 19 C -0.251 4.251 20 C -0.023 4.023 21 C 0.520 3.480 22 O -0.486 6.486 23 N -0.626 5.626 24 C 0.512 3.488 25 N -0.552 5.552 26 C 0.155 3.845 27 C -0.240 4.240 28 C 0.171 3.829 29 N -0.556 5.556 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.300 0.700 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.438 0.562 39 H 0.190 0.810 40 H 0.192 0.808 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 0.174 -22.837 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 H 0.138 0.862 4 O -0.259 6.259 5 C 0.376 3.624 6 O -0.454 6.454 7 C -0.294 4.294 8 C -0.055 4.055 9 C -0.220 4.220 10 C 0.101 3.899 11 C -0.482 4.482 12 H 0.113 0.887 13 C -0.187 4.187 14 N -0.414 5.414 15 Si 0.812 3.188 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.178 1.178 19 C -0.271 4.271 20 C -0.041 4.041 21 C 0.304 3.696 22 O -0.354 6.354 23 N -0.279 5.279 24 C 0.156 3.844 25 N -0.273 5.273 26 C -0.011 4.011 27 C -0.262 4.262 28 C 0.005 3.995 29 N -0.277 5.277 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.279 0.721 39 H 0.207 0.793 40 H 0.209 0.791 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.528 0.392 -21.679 21.830 hybrid contribution 0.265 0.053 0.025 0.272 sum -2.263 0.445 -21.654 21.777 Atomic orbital electron populations 1.22186 0.89308 1.04369 1.05654 1.22494 0.97810 0.97373 0.81176 0.86181 1.86693 1.78042 1.41528 1.19665 1.21334 0.73333 0.84527 0.83254 1.90666 1.53150 1.16744 1.84812 1.18385 1.24129 0.95053 0.91846 1.20526 0.95192 0.98106 0.91711 1.20954 1.08699 0.95220 0.97176 1.18203 0.86473 0.92039 0.93142 1.20246 1.28566 1.08418 0.90978 0.88670 1.27092 0.94372 0.92973 1.04225 1.69766 1.22700 1.19560 1.29326 0.85075 0.78913 0.79933 0.74904 1.18128 1.18848 1.17768 1.20931 1.12399 0.99110 0.94626 1.20742 0.93289 0.93026 0.97049 1.20572 0.79680 0.85376 0.83953 1.90841 1.36211 1.22658 1.85643 1.42861 1.55352 1.27579 1.02119 1.19545 0.90707 0.87825 0.86283 1.68430 1.13572 1.08665 1.36612 1.23785 0.91615 0.98112 0.87556 1.23223 1.03098 0.99354 1.00576 1.23834 0.88148 0.90691 0.96810 1.67857 1.25912 1.36001 0.97968 0.90835 0.86461 0.91161 0.87590 0.86770 0.88856 0.86780 0.86366 0.72092 0.79329 0.79123 0.76828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.50 71.98 0.68 -2.87 16 2 C 0.07 2.09 2.98 29.85 0.09 2.18 16 3 H 0.12 3.35 7.16 -2.38 -0.02 3.33 16 4 O -0.34 -13.71 8.65 -50.49 -0.44 -14.14 16 5 C 0.52 23.38 7.86 70.27 0.55 23.93 16 6 O -0.56 -25.42 15.58 19.82 0.31 -25.11 16 7 C -0.29 -14.22 5.89 -19.95 -0.12 -14.34 16 8 C -0.04 -1.84 9.52 22.26 0.21 -1.63 16 9 C -0.20 -10.57 8.63 22.47 0.19 -10.38 16 10 C 0.10 5.50 5.57 -21.28 -0.12 5.39 16 11 C -0.46 -22.73 9.04 23.46 0.21 -22.52 16 12 H 0.10 4.44 7.91 -2.91 -0.02 4.42 16 13 C 0.03 1.56 5.14 85.36 0.44 1.99 16 14 N -0.79 -38.21 10.95 21.88 0.24 -37.97 16 15 Si 0.99 34.34 29.60 68.60 2.03 36.37 16 16 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 17 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 18 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 19 C -0.25 -12.34 9.73 22.47 0.22 -12.12 16 20 C -0.02 -1.07 9.55 22.26 0.21 -0.86 16 21 C 0.52 15.78 7.14 87.65 0.63 16.41 16 22 O -0.49 -19.18 14.71 15.76 0.23 -18.95 16 23 N -0.63 -14.53 5.36 -313.67 -1.68 -16.21 16 24 C 0.51 12.79 8.38 261.29 2.19 14.98 16 25 N -0.55 -15.29 7.87 -197.68 -1.56 -16.85 16 26 C 0.15 2.74 11.30 84.71 0.96 3.70 16 27 C -0.24 -2.39 10.16 22.45 0.23 -2.16 16 28 C 0.17 1.94 11.30 84.72 0.96 2.90 16 29 N -0.56 -10.67 10.46 -197.68 -2.07 -12.74 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.12 1.61 7.92 -2.39 -0.02 1.59 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 5.11 7.63 -2.91 -0.02 5.08 16 34 H 0.11 6.07 6.16 -2.91 -0.02 6.05 16 35 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 37 H 0.12 5.21 7.59 -2.91 -0.02 5.19 16 38 H 0.44 6.83 8.60 -92.71 -0.80 6.03 16 39 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -74.36 365.99 4.91 -69.46 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.30 Total: 31.54 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 7.54 Total: 4.61 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -5.07 Total: -83.77 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: 0.10 Total: -58.20 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Total: -74.36 4.91 -69.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.658 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds