Wall clock time and date at job start Tue Mar 31 2020 23:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47083 * 2 1 4 4 O 1.45197 * 109.47055 * 240.00135 * 2 1 3 5 5 C 1.34777 * 117.00031 * 89.99993 * 4 2 1 6 6 O 1.21504 * 119.99877 * 0.02562 * 5 4 2 7 7 C 1.47511 * 120.00005 * 179.97438 * 5 4 2 8 8 C 1.40062 * 119.90007 * 179.97438 * 7 5 4 9 9 C 1.36301 * 120.09854 * 180.25545 * 8 7 5 10 10 C 1.40898 * 119.89747 * 359.51805 * 9 8 7 11 11 C 1.41088 * 120.09801 * 180.23021 * 10 9 8 12 12 H 1.08004 * 120.00254 * 205.25010 * 11 10 9 13 13 C 1.40247 * 120.00057 * 25.25428 * 11 10 9 14 14 N 1.30633 * 119.99971 * 17.90299 * 13 11 10 15 15 Si 1.86808 * 119.99982 * 197.90967 * 13 11 10 16 16 H 1.48494 * 109.47142 * 94.52344 * 15 13 11 17 17 H 1.48508 * 109.46771 * 214.52492 * 15 13 11 18 18 H 1.48496 * 109.47083 * 334.52055 * 15 13 11 19 19 C 1.40895 * 119.80478 * 0.50708 * 10 9 8 20 20 C 1.36298 * 119.89575 * 359.72208 * 19 10 9 21 21 C 1.50700 * 109.47106 * 119.99860 * 2 1 3 22 22 O 1.21270 * 119.99941 * 120.00015 * 21 2 1 23 23 N 1.34775 * 120.00315 * 300.00243 * 21 2 1 24 24 C 1.38935 * 120.00348 * 180.02562 * 23 21 2 25 25 N 1.32402 * 119.20113 * 359.72322 * 24 23 21 26 26 C 1.32280 * 120.75231 * 179.75936 * 25 24 23 27 27 C 1.38613 * 119.17936 * 0.50926 * 26 25 24 28 28 C 1.38609 * 118.54026 * 359.75082 * 27 26 25 29 29 N 1.32277 * 119.18280 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47018 * 300.00095 * 1 2 3 31 31 H 1.09002 * 109.47008 * 60.00053 * 1 2 3 32 32 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.07996 * 119.95285 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.04948 * 179.75205 * 9 8 7 35 35 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.05517 * 179.70820 * 19 10 9 37 37 H 1.08001 * 119.94895 * 180.02562 * 20 19 10 38 38 H 0.97009 * 119.99904 * 359.97438 * 23 21 2 39 39 H 1.07998 * 120.41230 * 180.23181 * 26 25 24 40 40 H 1.08001 * 120.72712 * 179.76545 * 27 26 25 41 41 H 1.07999 * 120.41296 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1855 5 6 2.2180 0.0671 -2.2856 6 8 1.9978 1.2616 -2.2546 7 6 2.7095 -0.5603 -3.5268 8 6 2.9202 0.2226 -4.6689 9 6 3.3694 -0.3538 -5.8194 10 6 3.6314 -1.7377 -5.8558 11 6 4.1011 -2.3380 -7.0431 12 1 3.9234 -3.3877 -7.2244 13 6 4.7988 -1.5715 -7.9878 14 7 5.3190 -0.4241 -7.6424 15 14 4.9842 -2.1913 -9.7403 16 1 3.9040 -1.6203 -10.5842 17 1 6.3046 -1.7730 -10.2762 18 1 4.8917 -3.6733 -9.7536 19 6 3.4175 -2.5215 -4.7046 20 6 2.9637 -1.9374 -3.5598 21 6 2.0324 -0.7104 1.2305 22 8 2.7296 -1.6964 1.1192 23 7 1.7068 -0.2500 2.4546 24 6 2.1703 -0.9046 3.5890 25 7 2.9263 -1.9825 3.4492 26 6 3.3882 -2.6267 4.5082 27 6 3.0626 -2.1663 5.7744 28 6 2.2648 -1.0382 5.8840 29 7 1.8412 -0.4384 4.7838 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.7222 1.2838 -4.6392 34 1 3.5278 0.2500 -6.7008 35 1 5.8013 0.1062 -8.2959 36 1 3.6125 -3.5835 -4.7294 37 1 2.7998 -2.5372 -2.6768 38 1 1.1493 0.5390 2.5436 39 1 4.0075 -3.5032 4.3878 40 1 3.4229 -2.6753 6.6562 41 1 1.9930 -0.6530 6.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758679331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:06 Heat of formation + Delta-G solvation = -33.738234 kcal Electronic energy + Delta-G solvation = -27653.072574 eV Core-core repulsion = 23498.864136 eV Total energy + Delta-G solvation = -4154.208439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58139 -40.21807 -39.14516 -37.45943 -35.78555 -35.26508 -33.98407 -33.97383 -32.37197 -30.78900 -30.14796 -29.53762 -26.28272 -25.51310 -24.95238 -23.81984 -22.33257 -21.18102 -20.65304 -19.87562 -18.96060 -17.90243 -17.59045 -17.14840 -16.68765 -16.19974 -16.02040 -15.83623 -15.44454 -15.26232 -14.89906 -14.51477 -14.11319 -13.95226 -13.75681 -13.57530 -13.15922 -12.95263 -12.74734 -12.43284 -12.21276 -11.94238 -11.70555 -11.46218 -11.34107 -11.27701 -11.23274 -11.14154 -10.99482 -10.72926 -10.48164 -10.13101 -9.94649 -9.60289 -9.52229 -9.40387 -9.24079 -9.03846 -7.75289 -7.64619 -7.10347 -4.68291 0.60688 0.82493 1.97155 2.06186 2.38339 2.86132 2.92974 2.96504 3.04006 3.27977 3.58076 3.60614 3.70369 3.81410 4.09278 4.32999 4.44995 4.54654 4.78644 4.81764 4.85102 4.95203 5.24559 5.41517 5.51289 5.58127 5.67619 5.85473 5.99317 6.16596 6.22504 6.26980 6.62510 6.74187 6.76324 6.81284 6.91447 7.04653 7.06273 7.41579 7.61280 7.76703 7.79447 7.85776 7.97346 8.00884 8.35331 8.55954 8.63981 8.69598 9.81249 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.001998 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.077481 B =14007.484578 C =14739.250987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 H 0.113 0.887 4 O -0.331 6.331 5 C 0.516 3.484 6 O -0.549 6.549 7 C -0.274 4.274 8 C -0.031 4.031 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.433 4.433 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.762 5.762 15 Si 0.917 3.083 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.239 4.239 20 C -0.025 4.025 21 C 0.511 3.489 22 O -0.436 6.436 23 N -0.639 5.639 24 C 0.541 3.459 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.267 4.267 28 C 0.178 3.822 29 N -0.552 5.552 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.424 0.576 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -0.345 19.989 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 H 0.130 0.870 4 O -0.248 6.248 5 C 0.368 3.632 6 O -0.443 6.443 7 C -0.277 4.277 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.129 3.871 11 C -0.460 4.460 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.385 5.385 15 Si 0.740 3.260 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.258 4.258 20 C -0.043 4.043 21 C 0.295 3.705 22 O -0.299 6.299 23 N -0.292 5.292 24 C 0.185 3.815 25 N -0.223 5.223 26 C 0.012 3.988 27 C -0.291 4.291 28 C 0.011 3.989 29 N -0.272 5.272 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.262 0.738 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.485 -0.063 18.844 19.626 hybrid contribution 0.223 -0.014 0.303 0.377 sum -5.262 -0.077 19.147 19.857 Atomic orbital electron populations 1.22176 0.92045 1.04000 1.04012 1.22083 0.95691 0.97579 0.82967 0.86968 1.86761 1.78115 1.41099 1.18845 1.21725 0.73695 0.84803 0.82929 1.90689 1.52822 1.16440 1.84340 1.18149 1.23864 0.94462 0.91193 1.20438 0.95191 0.97672 0.91705 1.20955 1.06051 0.95833 0.97533 1.17865 0.85732 0.92062 0.91483 1.19953 1.27859 0.97564 1.00609 0.89382 1.26179 0.93156 0.94177 1.01546 1.69745 1.21454 1.10784 1.36503 0.86147 0.78684 0.80672 0.80522 1.18871 1.19879 1.18120 1.20733 1.12560 0.99053 0.93494 1.20607 0.93651 0.93038 0.97035 1.20669 0.81167 0.85530 0.83182 1.90870 1.31564 1.22593 1.84909 1.43199 1.51912 1.31266 1.02809 1.19443 0.88957 0.87466 0.85588 1.68541 1.12002 1.07616 1.34182 1.23293 0.92065 0.96435 0.87047 1.22786 1.04760 1.01128 1.00404 1.22973 0.89533 0.90107 0.96275 1.67794 1.27109 1.34376 0.97953 0.90715 0.89953 0.90849 0.87991 0.85988 0.89950 0.88128 0.87679 0.73820 0.81059 0.83350 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.45 37.16 0.35 -1.54 16 2 C 0.08 1.14 2.99 -27.88 -0.08 1.06 16 3 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 4 O -0.33 -6.51 8.64 -47.38 -0.41 -6.92 16 5 C 0.52 11.34 7.86 34.51 0.27 11.61 16 6 O -0.55 -12.39 15.58 -19.27 -0.30 -12.69 16 7 C -0.27 -6.51 5.89 -104.75 -0.62 -7.13 16 8 C -0.03 -0.76 9.52 -39.60 -0.38 -1.14 16 9 C -0.18 -4.67 8.63 -39.27 -0.34 -5.01 16 10 C 0.13 3.37 5.57 -106.80 -0.59 2.77 16 11 C -0.43 -10.65 9.04 -37.75 -0.34 -10.99 16 12 H 0.09 2.05 7.91 -52.48 -0.42 1.63 16 13 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 14 N -0.76 -18.34 11.00 55.56 0.61 -17.72 16 15 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 16 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 19 C -0.24 -5.73 9.73 -39.28 -0.38 -6.11 16 20 C -0.02 -0.57 9.55 -39.59 -0.38 -0.95 16 21 C 0.51 7.70 7.20 -10.99 -0.08 7.62 16 22 O -0.44 -8.37 14.70 -14.09 -0.21 -8.58 16 23 N -0.64 -7.57 5.29 -13.07 -0.07 -7.64 16 24 C 0.54 6.93 8.38 -322.27 -2.70 4.23 16 25 N -0.50 -7.01 7.87 -13.83 -0.11 -7.12 16 26 C 0.18 1.71 11.30 -17.22 -0.19 1.52 16 27 C -0.27 -1.79 10.16 -39.31 -0.40 -2.19 16 28 C 0.18 1.31 11.30 -17.22 -0.19 1.12 16 29 N -0.55 -5.82 10.46 -13.83 -0.14 -5.97 16 30 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 34 H 0.12 3.11 6.20 -52.48 -0.33 2.79 16 35 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 36 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 37 H 0.11 2.27 7.59 -52.49 -0.40 1.87 16 38 H 0.42 3.54 8.23 -40.82 -0.34 3.20 16 39 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -32.88 365.26 -10.61 -43.49 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.31 Total: 9.14 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -6.15 Total: -3.55 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.29 Total: -38.45 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.92 Total: -28.20 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.88 -10.61 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.751 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds