Wall clock time and date at job start Tue Mar 31 2020 23:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47083 * 2 1 4 4 O 1.45197 * 109.47055 * 240.00135 * 2 1 3 5 5 C 1.34777 * 117.00031 * 89.99993 * 4 2 1 6 6 O 1.21504 * 119.99877 * 0.02562 * 5 4 2 7 7 C 1.47511 * 120.00005 * 179.97438 * 5 4 2 8 8 C 1.40062 * 119.90007 * 179.97438 * 7 5 4 9 9 C 1.36301 * 120.09854 * 180.25545 * 8 7 5 10 10 C 1.40898 * 119.89747 * 359.51805 * 9 8 7 11 11 C 1.41088 * 120.09801 * 180.23021 * 10 9 8 12 12 H 1.08004 * 120.00254 * 205.25010 * 11 10 9 13 13 C 1.40247 * 120.00057 * 25.25428 * 11 10 9 14 14 N 1.30633 * 119.99971 * 17.90299 * 13 11 10 15 15 Si 1.86808 * 119.99982 * 197.90967 * 13 11 10 16 16 H 1.48494 * 109.47142 * 94.52344 * 15 13 11 17 17 H 1.48508 * 109.46771 * 214.52492 * 15 13 11 18 18 H 1.48496 * 109.47083 * 334.52055 * 15 13 11 19 19 C 1.40895 * 119.80478 * 0.50708 * 10 9 8 20 20 C 1.36298 * 119.89575 * 359.72208 * 19 10 9 21 21 C 1.50700 * 109.47106 * 119.99860 * 2 1 3 22 22 O 1.21270 * 119.99941 * 120.00015 * 21 2 1 23 23 N 1.34775 * 120.00315 * 300.00243 * 21 2 1 24 24 C 1.38935 * 120.00348 * 180.02562 * 23 21 2 25 25 N 1.32402 * 119.20113 * 359.72322 * 24 23 21 26 26 C 1.32280 * 120.75231 * 179.75936 * 25 24 23 27 27 C 1.38613 * 119.17936 * 0.50926 * 26 25 24 28 28 C 1.38609 * 118.54026 * 359.75082 * 27 26 25 29 29 N 1.32277 * 119.18280 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47018 * 300.00095 * 1 2 3 31 31 H 1.09002 * 109.47008 * 60.00053 * 1 2 3 32 32 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.07996 * 119.95285 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.04948 * 179.75205 * 9 8 7 35 35 H 0.97002 * 119.99961 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.05517 * 179.70820 * 19 10 9 37 37 H 1.08001 * 119.94895 * 180.02562 * 20 19 10 38 38 H 0.97009 * 119.99904 * 359.97438 * 23 21 2 39 39 H 1.07998 * 120.41230 * 180.23181 * 26 25 24 40 40 H 1.08001 * 120.72712 * 179.76545 * 27 26 25 41 41 H 1.07999 * 120.41296 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1855 5 6 2.2180 0.0671 -2.2856 6 8 1.9978 1.2616 -2.2546 7 6 2.7095 -0.5603 -3.5268 8 6 2.9202 0.2226 -4.6689 9 6 3.3694 -0.3538 -5.8194 10 6 3.6314 -1.7377 -5.8558 11 6 4.1011 -2.3380 -7.0431 12 1 3.9234 -3.3877 -7.2244 13 6 4.7988 -1.5715 -7.9878 14 7 5.3190 -0.4241 -7.6424 15 14 4.9842 -2.1913 -9.7403 16 1 3.9040 -1.6203 -10.5842 17 1 6.3046 -1.7730 -10.2762 18 1 4.8917 -3.6733 -9.7536 19 6 3.4175 -2.5215 -4.7046 20 6 2.9637 -1.9374 -3.5598 21 6 2.0324 -0.7104 1.2305 22 8 2.7296 -1.6964 1.1192 23 7 1.7068 -0.2500 2.4546 24 6 2.1703 -0.9046 3.5890 25 7 2.9263 -1.9825 3.4492 26 6 3.3882 -2.6267 4.5082 27 6 3.0626 -2.1663 5.7744 28 6 2.2648 -1.0382 5.8840 29 7 1.8412 -0.4384 4.7838 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.7222 1.2838 -4.6392 34 1 3.5278 0.2500 -6.7008 35 1 5.8013 0.1062 -8.2959 36 1 3.6125 -3.5835 -4.7294 37 1 2.7998 -2.5372 -2.6768 38 1 1.1493 0.5390 2.5436 39 1 4.0075 -3.5032 4.3878 40 1 3.4229 -2.6753 6.6562 41 1 1.9930 -0.6530 6.8557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758679331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:05 Heat of formation + Delta-G solvation = -50.874607 kcal Electronic energy + Delta-G solvation = -27653.815663 eV Core-core repulsion = 23498.864136 eV Total energy + Delta-G solvation = -4154.951527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.44548 -41.58568 -40.46657 -39.25807 -37.36784 -36.31524 -35.78436 -34.73700 -33.48547 -32.10752 -31.59402 -31.31764 -28.05664 -26.53062 -25.69630 -24.94060 -23.85486 -22.96076 -21.95191 -21.45220 -19.89629 -19.42858 -19.14568 -18.47508 -17.87173 -17.33534 -17.22289 -16.98176 -16.76490 -16.61283 -15.94933 -15.75036 -15.47983 -15.29874 -15.15969 -14.74661 -14.35881 -14.33958 -14.15745 -14.05962 -13.70893 -13.41002 -13.33086 -12.90089 -12.74498 -12.67254 -12.42186 -12.17970 -12.14754 -11.94631 -11.89921 -11.82064 -11.43797 -11.32393 -11.18218 -11.03338 -10.06711 -9.82714 -9.65714 -9.54927 -8.86773 -6.56957 -0.15010 0.16782 0.19931 0.96497 1.12206 1.29870 1.35591 1.40649 1.54756 1.85141 1.97712 2.14245 2.65798 2.85211 2.98551 3.23566 3.59823 3.66456 3.69659 3.79508 3.83026 4.06356 4.25331 4.33504 4.37978 4.40673 4.58917 4.58973 4.82660 4.91147 4.94033 4.96391 5.01482 5.12577 5.18522 5.29776 5.45223 5.53564 5.74681 5.81375 5.90035 5.95826 6.05388 6.13454 6.47160 6.68297 6.75783 6.79806 6.94149 7.17241 8.08523 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.001998 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.077481 B =14007.484578 C =14739.250987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 H 0.120 0.880 4 O -0.342 6.342 5 C 0.523 3.477 6 O -0.559 6.559 7 C -0.291 4.291 8 C -0.036 4.036 9 C -0.201 4.201 10 C 0.105 3.895 11 C -0.456 4.456 12 H 0.096 0.904 13 C 0.033 3.967 14 N -0.793 5.793 15 Si 0.994 3.006 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.252 1.252 19 C -0.251 4.251 20 C -0.022 4.022 21 C 0.519 3.481 22 O -0.487 6.487 23 N -0.625 5.625 24 C 0.512 3.488 25 N -0.552 5.552 26 C 0.154 3.846 27 C -0.240 4.240 28 C 0.171 3.829 29 N -0.556 5.556 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.300 0.700 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.438 0.562 39 H 0.189 0.811 40 H 0.191 0.809 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -0.635 21.866 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 H 0.137 0.863 4 O -0.259 6.259 5 C 0.376 3.624 6 O -0.454 6.454 7 C -0.293 4.293 8 C -0.055 4.055 9 C -0.220 4.220 10 C 0.102 3.898 11 C -0.482 4.482 12 H 0.114 0.886 13 C -0.187 4.187 14 N -0.415 5.415 15 Si 0.813 3.187 16 H -0.183 1.183 17 H -0.189 1.189 18 H -0.175 1.175 19 C -0.270 4.270 20 C -0.041 4.041 21 C 0.304 3.696 22 O -0.355 6.355 23 N -0.279 5.279 24 C 0.156 3.844 25 N -0.273 5.273 26 C -0.011 4.011 27 C -0.262 4.262 28 C 0.005 3.995 29 N -0.277 5.277 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.279 0.721 39 H 0.206 0.794 40 H 0.209 0.791 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.927 -0.337 20.805 21.636 hybrid contribution 0.371 0.083 0.002 0.381 sum -5.556 -0.254 20.807 21.538 Atomic orbital electron populations 1.22200 0.89153 1.04457 1.05706 1.22504 0.97904 0.97318 0.81161 0.86255 1.86688 1.78065 1.41523 1.19636 1.21330 0.73363 0.84506 0.83226 1.90666 1.53190 1.16725 1.84795 1.18385 1.24014 0.94862 0.92084 1.20527 0.95133 0.97985 0.91884 1.20935 1.07308 0.96095 0.97657 1.18205 0.86609 0.92424 0.92579 1.20274 1.28433 0.98316 1.01197 0.88643 1.27106 0.92051 0.94035 1.05510 1.69777 1.21552 1.11833 1.38367 0.85006 0.78928 0.80199 0.74604 1.18338 1.18944 1.17509 1.20931 1.12907 0.99757 0.93403 1.20741 0.93036 0.93055 0.97268 1.20595 0.80312 0.84733 0.83990 1.90846 1.34040 1.24842 1.85739 1.42862 1.51635 1.31453 1.01919 1.19547 0.90354 0.88182 0.86287 1.68431 1.13340 1.08819 1.36727 1.23783 0.92613 0.97103 0.87594 1.23221 1.02425 1.00084 1.00519 1.23837 0.88752 0.90003 0.96873 1.67861 1.27268 1.34682 0.97891 0.86451 0.90753 0.91010 0.87583 0.86876 0.88891 0.86772 0.86354 0.72072 0.79374 0.79126 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.45 71.98 0.68 -2.76 16 2 C 0.07 2.08 2.99 29.85 0.09 2.17 16 3 H 0.12 3.37 7.16 -2.38 -0.02 3.36 16 4 O -0.34 -13.69 8.64 -50.49 -0.44 -14.12 16 5 C 0.52 23.39 7.86 70.27 0.55 23.95 16 6 O -0.56 -25.44 15.58 19.82 0.31 -25.14 16 7 C -0.29 -14.18 5.89 -19.95 -0.12 -14.30 16 8 C -0.04 -1.83 9.52 22.26 0.21 -1.62 16 9 C -0.20 -10.54 8.63 22.47 0.19 -10.35 16 10 C 0.11 5.53 5.57 -21.28 -0.12 5.41 16 11 C -0.46 -22.75 9.04 23.46 0.21 -22.54 16 12 H 0.10 4.47 7.91 -2.91 -0.02 4.44 16 13 C 0.03 1.53 5.13 85.36 0.44 1.97 16 14 N -0.79 -38.59 11.00 21.88 0.24 -38.35 16 15 Si 0.99 34.44 29.60 68.60 2.03 36.47 16 16 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 17 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 18 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 19 C -0.25 -12.30 9.73 22.47 0.22 -12.08 16 20 C -0.02 -1.07 9.55 22.26 0.21 -0.85 16 21 C 0.52 15.85 7.20 87.66 0.63 16.48 16 22 O -0.49 -19.40 14.70 15.80 0.23 -19.17 16 23 N -0.63 -14.54 5.29 -313.67 -1.66 -16.20 16 24 C 0.51 12.85 8.38 261.30 2.19 15.04 16 25 N -0.55 -15.45 7.87 -197.68 -1.56 -17.00 16 26 C 0.15 2.78 11.30 84.71 0.96 3.74 16 27 C -0.24 -2.43 10.16 22.45 0.23 -2.20 16 28 C 0.17 1.96 11.30 84.71 0.96 2.91 16 29 N -0.56 -10.69 10.46 -197.68 -2.07 -12.76 16 30 H 0.12 1.52 7.56 -2.39 -0.02 1.50 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 5.11 7.63 -2.91 -0.02 5.09 16 34 H 0.11 6.02 6.20 -2.91 -0.02 6.00 16 35 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 36 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 37 H 0.12 5.20 7.59 -2.91 -0.02 5.18 16 38 H 0.44 6.78 8.23 -92.70 -0.76 6.02 16 39 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.19 0.26 8.06 -2.91 -0.02 0.24 16 41 H 0.22 0.46 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -74.84 365.26 4.96 -69.88 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.34 Total: 31.44 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 7.54 Total: 4.95 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -5.04 Total: -84.31 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: 0.10 Total: -58.43 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -74.84 4.96 -69.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.003 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds