Wall clock time and date at job start Tue Mar 31 2020 23:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46509 * 109.46832 * 2 1 4 4 C 1.46498 * 119.99767 * 269.99603 * 3 2 1 5 5 C 1.50700 * 109.47569 * 270.00441 * 4 3 2 6 6 H 1.08007 * 119.99564 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00295 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00379 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47479 * 89.99816 * 9 7 5 11 11 H 1.48501 * 109.47089 * 210.00001 * 9 7 5 12 12 H 1.48500 * 109.46870 * 329.99493 * 9 7 5 13 13 C 1.34771 * 119.99862 * 89.99828 * 3 2 1 14 14 O 1.21285 * 119.99600 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00355 * 359.97438 * 13 3 2 16 16 O 1.45200 * 109.47097 * 179.97438 * 15 13 3 17 17 C 1.34752 * 116.99963 * 179.97438 * 16 15 13 18 18 O 1.21503 * 119.99800 * 0.02562 * 17 16 15 19 19 C 1.47400 * 119.99768 * 180.02562 * 17 16 15 20 20 C 1.39976 * 120.19714 * 90.27868 * 19 17 16 21 21 F 1.35106 * 120.09748 * 359.97438 * 20 19 17 22 22 C 1.38187 * 119.80414 * 180.27466 * 20 19 17 23 23 C 1.38338 * 120.19203 * 359.44421 * 22 20 19 24 24 C 1.38284 * 120.39774 * 0.28197 * 23 22 20 25 25 C 1.50702 * 119.90418 * 180.02562 * 24 23 22 26 26 C 1.38232 * 120.19621 * 359.97438 * 24 23 22 27 27 F 1.35102 * 120.10089 * 180.02562 * 26 24 23 28 28 H 1.09004 * 109.46873 * 60.00364 * 1 2 3 29 29 H 1.08993 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46959 * 300.00379 * 1 2 3 31 31 H 1.08996 * 109.47513 * 240.00125 * 2 1 3 32 32 H 1.08996 * 109.47161 * 119.99451 * 2 1 3 33 33 H 1.09004 * 109.47496 * 30.00207 * 4 3 2 34 34 H 1.08996 * 109.47328 * 149.99973 * 4 3 2 35 35 H 0.96997 * 120.00594 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46703 * 60.00179 * 15 13 3 37 37 H 1.08995 * 109.47130 * 300.00440 * 15 13 3 38 38 H 1.08002 * 119.90779 * 179.72945 * 22 20 19 39 39 H 1.07995 * 119.79856 * 180.25986 * 23 22 20 40 40 H 1.08998 * 109.47500 * 89.99647 * 25 24 23 41 41 H 1.08998 * 109.47165 * 209.99800 * 25 24 23 42 42 H 1.09004 * 109.46678 * 329.99948 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8775 8 7 3.3495 3.1265 -3.6177 9 14 5.9139 2.0975 -3.4164 10 1 5.9778 0.8768 -4.2595 11 1 6.3928 3.2652 -4.1988 12 1 6.7737 1.9177 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3065 2.4723 16 8 2.3063 2.1959 3.5759 17 6 2.1338 1.7107 4.8211 18 8 1.7314 0.5753 4.9803 19 6 2.4331 2.5573 5.9900 20 6 1.4342 3.3613 6.5513 21 9 0.1907 3.3648 6.0230 22 6 1.7252 4.1562 7.6436 23 6 2.9964 4.1502 8.1894 24 6 3.9879 3.3547 7.6449 25 6 5.3687 3.3564 8.2488 26 6 3.7160 2.5573 6.5490 27 9 4.6861 1.7805 6.0190 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.5818 1.6877 -2.0285 34 1 2.0955 3.1410 -1.1385 35 1 3.6757 3.5176 -4.4432 36 1 2.6211 0.4188 2.5302 37 1 0.9432 1.0126 2.5298 38 1 0.9569 4.7805 8.0753 39 1 3.2157 4.7707 9.0456 40 1 5.4289 2.5886 9.0201 41 1 6.1051 3.1498 7.4722 42 1 5.5707 4.3321 8.6908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766980468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:38 Heat of formation + Delta-G solvation = -180.059771 kcal Electronic energy + Delta-G solvation = -29453.995582 eV Core-core repulsion = 24842.752979 eV Total energy + Delta-G solvation = -4611.242603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.47478 -49.44713 -40.70828 -39.36817 -38.82307 -36.47419 -35.31837 -33.25397 -32.84320 -31.70529 -30.18650 -29.19296 -27.26733 -26.66236 -24.95492 -23.09363 -22.81040 -22.48767 -21.15081 -18.84830 -18.64517 -18.18794 -17.98906 -17.07877 -16.59099 -16.39690 -16.28593 -16.09933 -15.95675 -15.75202 -15.43155 -15.01999 -14.83341 -14.45260 -14.27731 -13.83064 -13.53688 -13.49968 -13.37142 -13.03348 -12.77975 -12.58262 -12.30123 -12.20982 -12.13598 -12.09194 -12.05230 -11.64475 -11.24373 -10.96373 -10.93106 -10.88181 -10.64983 -10.53853 -10.15092 -9.66700 -9.60879 -9.08976 -9.01921 -8.45081 -7.76756 -6.06051 -4.10982 0.21086 0.43618 1.74506 2.20991 2.76818 3.22430 3.23902 3.30093 3.36855 3.41995 3.72772 3.83841 4.07986 4.16414 4.37433 4.43829 4.48447 4.82625 4.86442 5.06555 5.13788 5.15404 5.16429 5.21995 5.28642 5.31323 5.34684 5.41392 5.57843 5.60638 5.66280 5.72613 5.97730 6.09236 6.16429 6.18765 6.44446 6.97693 7.37933 7.39340 7.48475 7.89906 8.19844 8.27612 8.83061 8.98039 9.54099 11.02156 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.002821 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.456929 B = 9921.842140 C =10969.240204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.517 6.517 15 C 0.047 3.953 16 O -0.314 6.314 17 C 0.517 3.483 18 O -0.485 6.485 19 C -0.171 4.171 20 C 0.166 3.834 21 F -0.118 7.118 22 C -0.158 4.158 23 C -0.042 4.042 24 C -0.129 4.129 25 C -0.114 4.114 26 C 0.171 3.829 27 F -0.115 7.115 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -1.456 25.330 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.392 6.392 15 C -0.030 4.030 16 O -0.228 6.228 17 C 0.358 3.642 18 O -0.372 6.372 19 C -0.174 4.174 20 C 0.147 3.853 21 F -0.097 7.097 22 C -0.177 4.177 23 C -0.060 4.060 24 C -0.130 4.130 25 C -0.171 4.171 26 C 0.151 3.849 27 F -0.093 7.093 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.047 -1.109 25.078 25.287 hybrid contribution 0.730 -0.588 -0.772 1.214 sum -2.317 -1.697 24.306 24.475 Atomic orbital electron populations 1.22237 0.96478 1.01740 1.02452 1.21526 0.93806 0.83907 1.03080 1.48207 1.63791 1.13426 1.07049 1.19342 0.96512 0.93727 0.77482 1.21431 0.96847 1.32113 1.06377 0.92368 1.24928 0.97937 0.94824 0.96345 1.69925 1.35742 1.33302 1.14340 0.86482 0.84580 0.77684 0.78608 1.20614 1.21046 1.19850 1.19630 0.79834 0.87153 0.84183 1.90725 1.44405 1.17449 1.86669 1.23111 1.03017 0.92711 0.84201 1.86721 1.77816 1.44643 1.13669 1.20600 0.74661 0.85405 0.83500 1.90884 1.41032 1.18491 1.86789 1.19018 0.94767 1.04940 0.98643 1.17228 0.79286 0.95378 0.93449 1.91599 1.37788 1.94853 1.85415 1.21157 0.99106 1.01097 0.96333 1.20969 0.90634 0.95989 0.98448 1.19950 0.98967 0.98240 0.95847 1.20773 0.91254 1.03591 1.01471 1.17064 0.83211 0.91583 0.93083 1.91586 1.60643 1.71871 1.85245 0.91734 0.91842 0.93129 0.89314 0.91758 0.94556 0.93675 0.92658 0.88297 0.88361 0.82797 0.83036 0.90218 0.90538 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.62 5.93 -4.03 -0.02 1.60 16 3 N -0.59 -12.65 2.46 -175.06 -0.43 -13.08 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.51 11.12 7.75 -10.99 -0.09 11.04 16 14 O -0.52 -13.71 16.08 -14.11 -0.23 -13.94 16 15 C 0.05 0.81 4.51 36.01 0.16 0.97 16 16 O -0.31 -5.82 9.77 -47.31 -0.46 -6.28 16 17 C 0.52 8.54 6.68 34.46 0.23 8.77 16 18 O -0.48 -8.47 16.90 -19.27 -0.33 -8.79 16 19 C -0.17 -2.31 5.76 -104.88 -0.60 -2.91 16 20 C 0.17 1.89 7.29 -38.95 -0.28 1.60 16 21 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 22 C -0.16 -1.16 10.01 -39.56 -0.40 -1.56 16 23 C -0.04 -0.25 9.68 -39.53 -0.38 -0.64 16 24 C -0.13 -1.05 5.88 -104.61 -0.62 -1.66 16 25 C -0.11 -0.65 9.83 36.01 0.35 -0.29 16 26 C 0.17 2.02 7.23 -38.94 -0.28 1.74 16 27 F -0.12 -1.53 16.03 2.25 0.04 -1.49 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 31 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.10 1.54 7.40 -51.93 -0.38 1.15 16 37 H 0.10 1.47 7.18 -51.93 -0.37 1.10 16 38 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.51 7.63 -51.93 -0.40 0.11 16 42 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -35.87 377.18 -7.13 -43.00 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -5.16 Total: -4.21 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -1.99 Total: 9.48 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.31 Total: -38.93 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.01 Total: -29.02 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.07 Total: -2.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.87 -7.13 -43.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766980468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.063 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds