Wall clock time and date at job start Tue Mar 31 2020 23:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46858 * 2 1 4 4 C 1.38461 * 119.99794 * 179.97438 * 3 2 1 5 5 N 1.29414 * 125.17383 * 179.97438 * 4 3 2 6 6 C 1.33668 * 116.89917 * 179.97438 * 5 4 3 7 7 C 1.47009 * 122.49357 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99803 * 180.02562 * 7 6 5 9 9 O 1.34823 * 120.00021 * 0.02562 * 7 6 5 10 10 C 1.45204 * 116.99940 * 180.02562 * 9 7 6 11 11 H 1.08992 * 109.46991 * 30.00473 * 10 9 7 12 12 C 1.52998 * 109.46952 * 270.00291 * 10 9 7 13 13 C 1.50701 * 109.46886 * 150.00391 * 10 9 7 14 14 O 1.21281 * 120.00127 * 16.02194 * 13 10 9 15 15 N 1.34778 * 119.99638 * 196.02970 * 13 10 9 16 16 C 1.46494 * 120.00128 * 5.36492 * 15 13 10 17 17 C 1.46499 * 119.99700 * 185.36122 * 15 13 10 18 18 C 1.50702 * 109.46860 * 89.99917 * 17 15 13 19 19 H 1.07999 * 120.00293 * 0.02562 * 18 17 15 20 20 C 1.37886 * 120.00009 * 179.97438 * 18 17 15 21 21 N 1.31515 * 119.99573 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99940 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47239 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46705 * 120.00367 * 22 20 18 25 25 H 1.48502 * 109.47091 * 240.00102 * 22 20 18 26 26 C 1.35139 * 115.01112 * 0.26869 * 6 5 4 27 27 S 1.76046 * 125.17566 * 359.97438 * 4 3 2 28 28 H 1.09011 * 109.47007 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47362 * 299.99702 * 1 2 3 30 30 H 1.08991 * 109.47403 * 60.00364 * 1 2 3 31 31 H 1.08997 * 109.46916 * 239.99493 * 2 1 3 32 32 H 1.09002 * 109.46967 * 119.99875 * 2 1 3 33 33 H 0.97000 * 120.00131 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47393 * 66.13987 * 12 10 9 35 35 H 1.08997 * 109.47092 * 306.13550 * 12 10 9 36 36 H 1.09000 * 109.46733 * 186.13756 * 12 10 9 37 37 H 1.08998 * 109.47479 * 84.82343 * 16 15 13 38 38 H 1.09002 * 109.47016 * 204.82429 * 16 15 13 39 39 H 1.09000 * 109.46810 * 324.81906 * 16 15 13 40 40 H 1.09003 * 109.47348 * 209.99678 * 17 15 13 41 41 H 1.09008 * 109.47508 * 330.00271 * 17 15 13 42 42 H 0.96998 * 119.99687 * 179.97438 * 21 20 18 43 43 H 1.08003 * 125.87386 * 179.69552 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3796 1.6342 0.0005 5 7 3.9192 2.8105 0.0001 6 6 5.2548 2.8631 0.0013 7 6 5.9952 4.1331 0.0015 8 8 7.2109 4.1280 0.0021 9 8 5.3259 5.3035 0.0011 10 6 6.1219 6.5180 0.0008 11 1 7.0653 6.3339 -0.5129 12 6 6.4013 6.9449 1.4432 13 6 5.3681 7.6124 -0.7100 14 8 4.1781 7.4959 -0.9131 15 7 6.0165 8.7205 -1.1201 16 6 7.4720 8.8112 -0.9812 17 6 5.2656 9.8342 -1.7049 18 6 4.8492 10.7870 -0.6141 19 1 5.1174 10.5835 0.4121 20 6 4.1267 11.9191 -0.9262 21 7 3.8005 12.1672 -2.1759 22 14 3.6099 13.0997 0.4260 23 1 4.0971 12.5964 1.7355 24 1 4.1937 14.4395 0.1630 25 1 2.1287 13.2020 0.4545 26 6 5.8739 1.6618 -0.0030 27 16 4.6396 0.4048 0.0019 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.3879 2.1185 -0.0004 34 1 7.0389 6.2034 1.9246 35 1 5.4603 7.0235 1.9876 36 1 6.9038 7.9122 1.4448 37 1 7.9491 8.3378 -1.8392 38 1 7.7678 9.8592 -0.9334 39 1 7.7820 8.3042 -0.0674 40 1 5.8946 10.3584 -2.4245 41 1 4.3791 9.4497 -2.2094 42 1 3.2919 12.9634 -2.3955 43 1 6.9418 1.5002 -0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768656675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:10 Heat of formation + Delta-G solvation = -61.157672 kcal Electronic energy + Delta-G solvation = -26883.190702 eV Core-core repulsion = 22863.237219 eV Total energy + Delta-G solvation = -4019.953483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78592 -39.53862 -38.67344 -36.87393 -36.26228 -34.81799 -32.79110 -31.88693 -31.42032 -29.16247 -27.75527 -26.23046 -25.89502 -24.23225 -23.53743 -22.83383 -21.88492 -19.97920 -19.06540 -18.74453 -17.44581 -16.72931 -16.51954 -16.46251 -16.17379 -15.78531 -15.70149 -15.63889 -15.09518 -14.65921 -14.38750 -14.19790 -13.58027 -13.44914 -13.12302 -12.93812 -12.75067 -12.58262 -12.31484 -12.26375 -12.14003 -12.05760 -12.02830 -11.68101 -11.34313 -11.20934 -10.88751 -10.78147 -10.74757 -10.65733 -10.52252 -10.15279 -9.91465 -9.60936 -9.57023 -8.83831 -8.43324 -8.18149 -7.66490 -6.03923 -4.08872 0.35146 0.69301 1.17633 1.78612 2.43974 2.72265 3.09245 3.30583 3.31170 3.38599 3.43290 3.92238 4.25854 4.39844 4.45331 4.48119 4.74913 4.86780 4.93532 5.03330 5.11614 5.13656 5.18411 5.30141 5.30735 5.45209 5.53408 5.59524 5.75061 5.81002 5.91551 6.13693 6.17678 6.29326 6.39529 6.88902 7.03155 7.41171 7.44606 7.52365 7.80632 7.92763 8.22690 8.34736 8.88552 9.04288 9.56123 11.04250 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.002446 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.486716 B =11443.880713 C =12781.862512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.691 5.691 4 C 0.347 3.653 5 N -0.506 5.506 6 C 0.083 3.917 7 C 0.542 3.458 8 O -0.503 6.503 9 O -0.300 6.300 10 C 0.068 3.932 11 H 0.103 0.897 12 C -0.164 4.164 13 C 0.510 3.490 14 O -0.516 6.516 15 N -0.598 5.598 16 C 0.074 3.926 17 C 0.245 3.755 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.209 4.209 27 S 0.082 5.918 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.418 0.582 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -27.231 5.373 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.334 5.334 4 C -0.027 4.027 5 N -0.231 5.231 6 C -0.048 4.048 7 C 0.383 3.617 8 O -0.392 6.392 9 O -0.214 6.214 10 C 0.009 3.991 11 H 0.121 0.879 12 C -0.222 4.222 13 C 0.294 3.706 14 O -0.391 6.391 15 N -0.332 5.332 16 C -0.070 4.070 17 C 0.127 3.873 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.352 4.352 27 S 0.329 5.671 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.258 0.742 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.967 -27.931 5.134 28.416 hybrid contribution 0.119 1.856 0.685 1.982 sum 1.086 -26.076 5.819 26.739 Atomic orbital electron populations 1.21959 0.93115 1.03648 1.03455 1.21550 0.96020 0.81197 1.02063 1.44043 1.00298 1.08990 1.80033 1.24191 0.90916 0.90031 0.97574 1.66697 1.09361 1.21973 1.25111 1.18754 0.87706 0.91517 1.06802 1.19993 0.85215 0.83855 0.72592 1.90858 1.13758 1.87870 1.46703 1.86842 1.39201 1.13095 1.82280 1.22746 0.94909 0.82404 0.99007 0.87903 1.22164 1.03550 1.02824 0.93626 1.19729 0.87809 0.82788 0.80229 1.90708 1.14788 1.78670 1.54956 1.48065 1.07126 1.17086 1.60876 1.21827 0.81415 1.03544 1.00221 1.19366 0.92174 0.81973 0.93822 1.21476 1.34979 1.06110 0.94048 0.92293 1.24947 0.95623 0.97905 0.95666 1.69946 1.38964 1.27220 1.17154 0.86429 0.78476 0.80476 0.81967 1.19765 1.20965 1.20857 1.26702 1.04456 0.92849 1.11173 1.84891 0.97272 1.10484 1.74405 0.90211 0.91388 0.91329 0.91317 0.91346 0.74242 0.91242 0.90586 0.89423 0.93453 0.90111 0.92241 0.94637 0.93581 0.92737 0.79085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 10.03 37.16 0.37 -0.17 16 2 C 0.12 0.55 6.31 -4.04 -0.03 0.53 16 3 N -0.69 -5.68 5.71 -61.02 -0.35 -6.03 16 4 C 0.35 3.87 8.42 -88.05 -0.74 3.13 16 5 N -0.51 -7.56 10.52 -10.61 -0.11 -7.67 16 6 C 0.08 1.21 6.67 -84.62 -0.56 0.64 16 7 C 0.54 9.08 7.91 34.29 0.27 9.35 16 8 O -0.50 -8.38 15.93 -19.32 -0.31 -8.68 16 9 O -0.30 -5.78 9.38 -47.36 -0.44 -6.22 16 10 C 0.07 1.24 2.14 -27.88 -0.06 1.18 16 11 H 0.10 1.68 6.32 -51.93 -0.33 1.35 16 12 C -0.16 -2.53 9.19 37.16 0.34 -2.19 16 13 C 0.51 11.58 6.95 -10.98 -0.08 11.50 16 14 O -0.52 -14.11 16.13 -13.54 -0.22 -14.33 16 15 N -0.60 -13.21 2.86 -182.95 -0.52 -13.74 16 16 C 0.07 1.21 9.79 59.84 0.59 1.80 16 17 C 0.25 6.55 5.18 -5.19 -0.03 6.53 16 18 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.21 -2.30 10.83 29.63 0.32 -1.97 16 27 S 0.08 0.70 22.61 -107.50 -2.43 -1.73 16 28 H 0.08 0.16 8.14 -51.92 -0.42 -0.27 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.42 3.41 8.60 -40.82 -0.35 3.06 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 39 H 0.06 0.82 4.92 -51.93 -0.26 0.56 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.39 7.36 -51.92 -0.38 1.01 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.19 1.72 8.01 -52.48 -0.42 1.30 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -36.76 384.44 -8.73 -45.49 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.83 Total: -0.39 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -0.02 Total: 16.59 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.25 Total: -53.49 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.97 Total: -29.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.43 Total: -1.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.76 -8.73 -45.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768656675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.667 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds