Wall clock time and date at job start Tue Mar 31 2020 23:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47122 * 2 1 4 4 C 1.38454 * 119.99698 * 179.97438 * 3 2 1 5 5 N 1.29423 * 125.17216 * 180.02562 * 4 3 2 6 6 C 1.33667 * 116.90033 * 179.97438 * 5 4 3 7 7 C 1.47001 * 122.49617 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00262 * 180.02562 * 7 6 5 9 9 O 1.34832 * 119.99505 * 0.02562 * 7 6 5 10 10 C 1.45206 * 116.99290 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47146 * 329.99032 * 10 9 7 12 12 C 1.52997 * 109.47226 * 90.00006 * 10 9 7 13 13 C 1.50706 * 109.46448 * 209.99798 * 10 9 7 14 14 O 1.21283 * 120.00236 * 354.99931 * 13 10 9 15 15 N 1.34774 * 119.99861 * 175.00107 * 13 10 9 16 16 C 1.46507 * 120.00108 * 359.97438 * 15 13 10 17 17 C 1.46496 * 120.00367 * 180.02562 * 15 13 10 18 18 C 1.50695 * 109.47370 * 89.99805 * 17 15 13 19 19 H 1.08005 * 120.00163 * 0.02562 * 18 17 15 20 20 C 1.37882 * 120.00369 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99460 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00346 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47016 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47330 * 119.99488 * 22 20 18 25 25 H 1.48505 * 109.46750 * 239.99831 * 22 20 18 26 26 C 1.35145 * 115.01086 * 0.23965 * 6 5 4 27 27 S 1.76050 * 125.17720 * 359.97438 * 4 3 2 28 28 H 1.09008 * 109.47432 * 299.99805 * 1 2 3 29 29 H 1.08999 * 109.47450 * 60.00081 * 1 2 3 30 30 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47223 * 239.99701 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00171 * 2 1 3 33 33 H 0.96994 * 119.99759 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99431 * 12 10 9 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47261 * 59.99603 * 12 10 9 37 37 H 1.09002 * 109.47123 * 89.99538 * 16 15 13 38 38 H 1.08997 * 109.47369 * 209.99929 * 16 15 13 39 39 H 1.09002 * 109.47042 * 330.00239 * 16 15 13 40 40 H 1.09001 * 109.47223 * 209.99860 * 17 15 13 41 41 H 1.09007 * 109.46674 * 329.99720 * 17 15 13 42 42 H 0.96998 * 120.00028 * 180.02562 * 21 20 18 43 43 H 1.07998 * 125.87369 * 179.71857 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3795 1.6342 0.0005 5 7 3.9193 2.8105 0.0011 6 6 5.2549 2.8631 0.0021 7 6 5.9953 4.1330 0.0022 8 8 7.2109 4.1279 0.0027 9 8 5.3260 5.3035 0.0018 10 6 6.1220 6.5179 0.0014 11 1 7.0654 6.3341 0.5154 12 6 6.4016 6.9440 -1.4412 13 6 5.3681 7.6128 0.7114 14 8 4.2331 7.4189 1.0924 15 7 5.9552 8.8073 0.9230 16 6 7.3264 9.0413 0.4633 17 6 5.2227 9.8715 1.6137 18 6 5.4699 9.7706 3.0968 19 1 6.1092 8.9919 3.4861 20 6 4.8801 10.6724 3.9571 21 7 4.1021 11.6209 3.4831 22 14 5.1871 10.5479 5.7954 23 1 6.0925 9.4031 6.0696 24 1 5.8158 11.8034 6.2785 25 1 3.8967 10.3375 6.4996 26 6 5.8740 1.6618 -0.0027 27 16 4.6396 0.4047 0.0019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3880 2.1185 0.0004 34 1 6.9468 6.1521 -1.9548 35 1 6.9987 7.8558 -1.4415 36 1 5.4580 7.1278 -1.9552 37 1 7.3067 9.4359 -0.5526 38 1 7.8132 9.7598 1.1228 39 1 7.8797 8.1022 0.4776 40 1 5.5654 10.8415 1.2534 41 1 4.1560 9.7662 1.4152 42 1 3.6874 12.2556 4.0881 43 1 6.9418 1.5001 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768656676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:13 Heat of formation + Delta-G solvation = -59.510436 kcal Electronic energy + Delta-G solvation = -26921.335080 eV Core-core repulsion = 22901.453027 eV Total energy + Delta-G solvation = -4019.882054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77285 -39.53471 -38.67566 -36.86000 -36.24459 -34.85078 -32.84486 -31.86613 -31.40015 -29.14744 -27.68172 -26.28501 -25.90515 -24.23509 -23.52767 -22.82011 -21.88231 -19.97480 -19.05621 -18.77314 -17.44278 -16.71724 -16.53287 -16.40462 -16.18471 -15.78464 -15.64990 -15.63242 -15.19879 -14.62093 -14.39508 -14.07402 -13.57515 -13.44956 -13.21402 -12.94431 -12.79084 -12.57142 -12.34639 -12.25770 -12.17066 -12.06730 -12.02221 -11.62693 -11.34556 -11.17006 -10.86780 -10.76902 -10.73146 -10.64486 -10.53099 -10.14184 -9.89932 -9.59768 -9.55146 -8.83148 -8.42421 -8.16491 -7.67277 -6.03182 -4.07672 0.37087 0.71050 1.19366 1.80551 2.45321 2.73597 3.11242 3.31602 3.33887 3.39510 3.44891 3.91615 4.26477 4.40554 4.46992 4.49078 4.75905 4.85845 4.94549 5.02192 5.09419 5.14660 5.15649 5.31003 5.31549 5.44992 5.52993 5.62049 5.71685 5.72581 5.90416 6.05773 6.19012 6.26541 6.39748 6.90255 7.02621 7.42162 7.43951 7.52190 7.82302 7.93576 8.23688 8.34547 8.89745 9.05143 9.57288 11.05039 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012222 B = 0.002581 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.360937 B =10847.635287 C =11999.876259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.691 5.691 4 C 0.347 3.653 5 N -0.506 5.506 6 C 0.083 3.917 7 C 0.543 3.457 8 O -0.503 6.503 9 O -0.300 6.300 10 C 0.067 3.933 11 H 0.106 0.894 12 C -0.169 4.169 13 C 0.509 3.491 14 O -0.515 6.515 15 N -0.597 5.597 16 C 0.076 3.924 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.208 4.208 27 S 0.082 5.918 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.263 0.737 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -24.566 -11.724 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.334 5.334 4 C -0.027 4.027 5 N -0.231 5.231 6 C -0.047 4.047 7 C 0.384 3.616 8 O -0.392 6.392 9 O -0.213 6.213 10 C 0.008 3.992 11 H 0.124 0.876 12 C -0.227 4.227 13 C 0.293 3.707 14 O -0.390 6.390 15 N -0.331 5.331 16 C -0.067 4.067 17 C 0.128 3.872 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.352 4.352 27 S 0.329 5.671 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.568 -25.284 -11.454 27.763 hybrid contribution 0.571 1.108 1.102 1.663 sum 0.003 -24.176 -10.352 26.299 Atomic orbital electron populations 1.21958 0.93126 1.03643 1.03441 1.21549 0.96008 0.81207 1.02068 1.44033 1.00293 1.08974 1.80071 1.24188 0.90908 0.90037 0.97593 1.66696 1.09362 1.21970 1.25089 1.18745 0.87703 0.91507 1.06774 1.19977 0.85209 0.83833 0.72568 1.90858 1.13768 1.87852 1.46685 1.86827 1.39156 1.13072 1.82285 1.22710 0.95131 0.82597 0.98726 0.87599 1.22278 1.03509 1.03108 0.93757 1.19736 0.87249 0.83069 0.80664 1.90720 1.18040 1.79978 1.50272 1.48060 1.14449 1.13530 1.57043 1.21840 0.83924 1.01675 0.99303 1.19346 0.93090 0.83494 0.91274 1.21476 1.29587 1.13889 0.91585 0.92371 1.24935 0.94873 0.95169 0.99137 1.69941 1.31426 1.16857 1.35145 0.86432 0.78128 0.77803 0.85016 1.19780 1.20936 1.20849 1.26704 1.04457 0.92846 1.11155 1.84886 0.97276 1.10487 1.74414 0.91326 0.91402 0.90216 0.91343 0.91322 0.74265 0.91292 0.89244 0.90914 0.93152 0.90327 0.92340 0.94600 0.93652 0.92752 0.79086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 10.03 37.16 0.37 -0.19 16 2 C 0.12 0.57 6.31 -4.04 -0.03 0.55 16 3 N -0.69 -5.81 5.71 -61.02 -0.35 -6.15 16 4 C 0.35 3.95 8.42 -88.05 -0.74 3.21 16 5 N -0.51 -7.69 10.52 -10.61 -0.11 -7.80 16 6 C 0.08 1.25 6.67 -84.62 -0.56 0.68 16 7 C 0.54 9.30 7.91 34.28 0.27 9.57 16 8 O -0.50 -8.61 15.92 -19.32 -0.31 -8.91 16 9 O -0.30 -5.81 9.34 -47.52 -0.44 -6.26 16 10 C 0.07 1.21 2.17 -27.88 -0.06 1.15 16 11 H 0.11 1.80 6.15 -51.93 -0.32 1.48 16 12 C -0.17 -2.38 9.28 37.16 0.34 -2.04 16 13 C 0.51 11.53 7.10 -10.98 -0.08 11.45 16 14 O -0.52 -14.15 16.09 -14.05 -0.23 -14.37 16 15 N -0.60 -13.13 2.86 -182.95 -0.52 -13.65 16 16 C 0.08 1.23 8.92 59.85 0.53 1.77 16 17 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 18 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 19 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 22 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 C -0.21 -2.37 10.84 29.63 0.32 -2.05 16 27 S 0.08 0.72 22.61 -107.50 -2.43 -1.71 16 28 H 0.07 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.42 3.46 8.60 -40.82 -0.35 3.11 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.09 5.12 -51.93 -0.27 0.82 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.67 7.02 -51.93 -0.36 0.31 16 38 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 39 H 0.06 0.80 6.08 -51.93 -0.32 0.49 16 40 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.05 1.36 7.42 -51.92 -0.39 0.98 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.19 1.80 8.01 -52.49 -0.42 1.38 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -37.26 382.49 -8.75 -46.01 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.76 Total: -0.77 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: -0.07 Total: 16.74 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.25 Total: -53.78 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.98 Total: -29.54 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.43 Total: -1.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.26 -8.75 -46.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768656676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.500 kcal (2) G-P(sol) polarization free energy of solvation -37.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds