Wall clock time and date at job start Tue Mar 31 2020 23:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47059 * 2 1 4 4 C 1.38454 * 119.99908 * 179.72348 * 3 2 1 5 5 N 1.29422 * 125.17801 * 180.02562 * 4 3 2 6 6 C 1.33672 * 116.89732 * 179.78217 * 5 4 3 7 7 C 1.47008 * 122.48850 * 180.26899 * 6 5 4 8 8 O 1.21575 * 119.99495 * 180.25916 * 7 6 5 9 9 O 1.34821 * 120.00019 * 0.25945 * 7 6 5 10 10 C 1.45206 * 116.99691 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46698 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00131 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46509 * 119.99911 * 0.02562 * 13 11 10 15 15 C 1.52997 * 109.47032 * 89.99559 * 14 13 11 16 16 C 1.46493 * 120.00346 * 180.02562 * 13 11 10 17 17 C 1.50701 * 109.47252 * 89.99931 * 16 13 11 18 18 H 1.08001 * 120.00020 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99989 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99937 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00207 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46857 * 89.99902 * 21 19 17 23 23 H 1.48493 * 109.47326 * 210.00299 * 21 19 17 24 24 H 1.48506 * 109.47007 * 330.00172 * 21 19 17 25 25 C 1.35140 * 115.01669 * 0.50891 * 6 5 4 26 26 S 1.76051 * 125.17415 * 0.30652 * 4 3 2 27 27 H 1.09000 * 109.47665 * 59.99541 * 1 2 3 28 28 H 1.09003 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47066 * 299.99732 * 1 2 3 30 30 H 1.09004 * 109.47066 * 240.00268 * 2 1 3 31 31 H 1.08994 * 109.46974 * 120.00415 * 2 1 3 32 32 H 0.97001 * 120.00384 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.46963 * 300.00010 * 10 9 7 34 34 H 1.08996 * 109.47175 * 60.00174 * 10 9 7 35 35 H 1.08994 * 109.46640 * 209.99594 * 14 13 11 36 36 H 1.09000 * 109.46844 * 329.99645 * 14 13 11 37 37 H 1.09001 * 109.47567 * 300.00414 * 15 14 13 38 38 H 1.09000 * 109.47236 * 60.00326 * 15 14 13 39 39 H 1.08996 * 109.47183 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47656 * 210.00772 * 16 13 11 41 41 H 1.09007 * 109.47088 * 330.00196 * 16 13 11 42 42 H 0.97000 * 120.00132 * 179.97438 * 20 19 17 43 43 H 1.07998 * 125.87590 * 179.73175 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3795 1.6342 0.0058 5 7 3.9193 2.8105 0.0068 6 6 5.2549 2.8629 0.0173 7 6 5.9952 4.1330 0.0255 8 8 7.2110 4.1278 0.0301 9 8 5.3260 5.3033 0.0278 10 6 6.1220 6.5178 0.0354 11 6 5.2089 7.7167 0.0364 12 8 4.0060 7.5629 0.0317 13 7 5.7293 8.9600 0.0436 14 6 7.1825 9.1458 0.0498 15 6 7.6938 9.2165 -1.3904 16 6 4.8419 10.1255 0.0452 17 6 4.5322 10.5193 1.4665 18 1 4.9546 9.9577 2.2866 19 6 3.7096 11.5964 1.7198 20 7 3.4398 11.9403 2.9602 21 14 2.9785 12.5673 0.3013 22 1 1.6713 11.9759 -0.0815 23 1 2.7803 13.9788 0.7177 24 1 3.9028 12.5190 -0.8600 25 6 5.8740 1.6617 0.0146 26 16 4.6395 0.4047 0.0058 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3880 2.1185 0.0004 33 1 6.7478 6.5364 0.9276 34 1 6.7539 6.5436 -0.8523 35 1 7.4280 10.0725 0.5684 36 1 7.6539 8.3070 0.5620 37 1 7.4482 8.2897 -1.9091 38 1 7.2225 10.0553 -1.9026 39 1 8.7749 9.3552 -1.3858 40 1 5.3317 10.9559 -0.4635 41 1 3.9155 9.8776 -0.4732 42 1 2.8614 12.6983 3.1384 43 1 6.9418 1.5000 0.0176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768659164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:05 Heat of formation + Delta-G solvation = -59.828545 kcal Electronic energy + Delta-G solvation = -26628.058803 eV Core-core repulsion = 22608.162955 eV Total energy + Delta-G solvation = -4019.895848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73585 -39.49221 -38.81122 -36.87708 -36.29419 -35.34740 -32.73236 -31.81853 -30.42837 -29.45629 -29.09126 -27.20774 -25.47396 -23.54335 -23.00647 -22.71325 -22.02082 -20.05406 -19.08125 -18.58633 -17.46803 -16.99547 -16.70010 -16.56520 -16.46415 -15.88079 -15.84912 -15.65545 -15.25575 -14.82625 -14.30137 -13.98554 -13.63027 -13.50733 -13.38726 -12.97627 -12.83912 -12.61920 -12.51162 -12.38407 -12.24922 -12.14289 -12.10511 -11.79999 -11.42922 -10.99240 -10.87525 -10.82030 -10.75359 -10.52920 -10.48710 -10.14730 -9.92047 -9.57659 -9.53078 -9.04319 -8.57333 -8.18587 -7.77132 -6.07019 -4.05959 0.33972 0.68657 1.16517 1.76673 2.41597 2.67831 3.06802 3.24304 3.30847 3.36630 3.38735 3.80091 4.24519 4.39518 4.41179 4.48372 4.75173 4.84116 4.90753 5.00461 5.13347 5.16523 5.21734 5.26375 5.30471 5.35557 5.47222 5.53971 5.55505 5.70123 5.97012 6.13965 6.17313 6.27116 6.39259 6.69135 6.88749 6.93724 7.29261 7.40276 7.61391 7.77019 8.16334 8.47551 8.88321 8.97365 9.52747 11.06379 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.002504 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.216790 B =11177.510780 C =12838.747287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.691 5.691 4 C 0.348 3.652 5 N -0.506 5.506 6 C 0.083 3.917 7 C 0.543 3.457 8 O -0.503 6.503 9 O -0.304 6.304 10 C 0.048 3.952 11 C 0.510 3.490 12 O -0.513 6.513 13 N -0.589 5.589 14 C 0.101 3.899 15 C -0.171 4.171 16 C 0.218 3.782 17 C -0.530 4.530 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.208 4.208 26 S 0.083 5.917 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.418 0.582 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -25.959 -8.563 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.333 5.333 4 C -0.027 4.027 5 N -0.232 5.232 6 C -0.048 4.048 7 C 0.385 3.615 8 O -0.392 6.392 9 O -0.217 6.217 10 C -0.029 4.029 11 C 0.294 3.706 12 O -0.388 6.388 13 N -0.323 5.323 14 C -0.022 4.022 15 C -0.230 4.230 16 C 0.098 3.902 17 C -0.568 4.568 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.351 4.351 26 S 0.330 5.670 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.258 0.742 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.132 -26.682 -8.464 28.073 hybrid contribution 0.022 1.730 -0.497 1.800 sum 2.154 -24.951 -8.961 26.599 Atomic orbital electron populations 1.21960 0.93106 1.03651 1.03472 1.21552 0.96035 0.81184 1.02064 1.44052 1.00307 1.09013 1.79968 1.24191 0.90925 0.90019 0.97532 1.66707 1.09328 1.21987 1.25148 1.18726 0.87723 0.91441 1.06914 1.19967 0.85141 0.83614 0.72824 1.90878 1.13736 1.88007 1.46548 1.86771 1.39167 1.13196 1.82591 1.22999 0.93501 0.81991 1.04444 1.19686 0.88731 0.83624 0.78521 1.90731 1.14799 1.85169 1.48093 1.47861 1.06662 1.05786 1.71953 1.21537 0.80741 1.03374 0.96594 1.22247 1.00951 1.02243 0.97512 1.19690 0.89813 0.82184 0.98486 1.21329 1.30203 1.14048 0.91221 0.90678 1.24852 0.95618 0.96940 0.95578 1.69896 1.37146 1.27883 1.18621 0.86850 0.80509 0.79421 0.82912 1.19870 1.21072 1.19036 1.26699 1.04462 0.92839 1.11138 1.84901 0.97245 1.10467 1.74367 0.91379 0.90206 0.91319 0.91334 0.91313 0.74213 0.88302 0.88530 0.89208 0.91352 0.93001 0.92013 0.91703 0.94900 0.94440 0.92552 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.56 10.03 37.16 0.37 -0.19 16 2 C 0.12 0.56 6.31 -4.04 -0.03 0.53 16 3 N -0.69 -5.72 5.71 -61.02 -0.35 -6.07 16 4 C 0.35 3.87 8.42 -88.05 -0.74 3.13 16 5 N -0.51 -7.54 10.52 -10.61 -0.11 -7.65 16 6 C 0.08 1.19 6.67 -84.61 -0.56 0.63 16 7 C 0.54 8.90 7.93 34.28 0.27 9.17 16 8 O -0.50 -8.21 16.46 -19.32 -0.32 -8.53 16 9 O -0.30 -5.71 9.67 -47.51 -0.46 -6.17 16 10 C 0.05 0.83 4.51 36.01 0.16 0.99 16 11 C 0.51 11.07 7.75 -10.98 -0.09 10.98 16 12 O -0.51 -13.56 16.08 -14.10 -0.23 -13.78 16 13 N -0.59 -12.35 2.46 -175.06 -0.43 -12.78 16 14 C 0.10 1.59 5.93 -4.04 -0.02 1.57 16 15 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 16 C 0.22 5.39 4.23 -5.20 -0.02 5.37 16 17 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 25 C -0.21 -2.26 10.84 29.63 0.32 -1.94 16 26 S 0.08 0.70 22.61 -107.50 -2.43 -1.73 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.42 3.46 8.60 -40.82 -0.35 3.11 16 33 H 0.10 1.53 7.40 -51.93 -0.38 1.14 16 34 H 0.10 1.39 7.18 -51.93 -0.37 1.02 16 35 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 36 H 0.07 0.92 6.44 -51.93 -0.33 0.58 16 37 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 41 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.19 1.69 8.01 -52.49 -0.42 1.27 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -37.70 384.21 -8.76 -46.46 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.93 Total: -0.21 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -0.39 Total: 14.76 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.12 Total: -53.66 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.00 Total: -28.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.43 Total: -1.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.70 -8.76 -46.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768659164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.370 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds