Wall clock time and date at job start Tue Mar 31 2020 23:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47135 * 2 1 4 4 C 1.37805 * 120.00087 * 179.97438 * 3 2 1 5 5 N 1.30264 * 124.73795 * 359.97218 * 4 3 2 6 6 C 1.30825 * 117.27430 * 180.02562 * 5 4 3 7 7 C 1.36829 * 114.01254 * 0.02562 * 6 5 4 8 8 C 1.41734 * 126.11394 * 179.97438 * 7 6 5 9 9 O 1.21681 * 120.00364 * 0.02562 * 8 7 6 10 10 O 1.34948 * 119.99931 * 179.97438 * 8 7 6 11 11 C 1.42905 * 117.00143 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47264 * 180.02562 * 11 10 8 13 13 O 1.21279 * 119.99926 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.46493 * 120.00135 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.47539 * 89.99624 * 15 14 12 17 17 C 1.46496 * 119.99642 * 180.02562 * 14 12 11 18 18 C 1.50697 * 109.47335 * 90.00455 * 17 14 12 19 19 H 1.07998 * 119.99876 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00362 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00086 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99901 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46965 * 90.00243 * 22 20 18 24 24 H 1.48501 * 109.47201 * 210.00295 * 22 20 18 25 25 H 1.48504 * 109.46922 * 330.00560 * 22 20 18 26 26 S 1.70919 * 124.74115 * 180.29005 * 4 3 2 27 27 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47391 * 300.00401 * 1 2 3 29 29 H 1.09000 * 109.46480 * 59.99969 * 1 2 3 30 30 H 1.08994 * 109.47876 * 239.99811 * 2 1 3 31 31 H 1.09000 * 109.46760 * 119.99300 * 2 1 3 32 32 H 0.96996 * 120.00119 * 359.97438 * 3 2 1 33 33 H 1.07996 * 122.99039 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47103 * 300.00505 * 11 10 8 35 35 H 1.09004 * 109.47054 * 60.00009 * 11 10 8 36 36 H 1.09003 * 109.47161 * 210.00024 * 15 14 12 37 37 H 1.09002 * 109.47359 * 329.99662 * 15 14 12 38 38 H 1.08994 * 109.47494 * 300.00272 * 16 15 14 39 39 H 1.09001 * 109.47274 * 60.00246 * 16 15 14 40 40 H 1.09005 * 109.47543 * 179.97438 * 16 15 14 41 41 H 1.09002 * 109.47248 * 210.00192 * 17 14 12 42 42 H 1.09004 * 109.47206 * 329.99749 * 17 14 12 43 43 H 0.97003 * 119.99677 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3732 1.6331 0.0005 5 7 4.2986 0.7163 0.0016 6 6 5.5428 1.1204 0.0025 7 6 5.6863 2.4811 0.0027 8 6 6.9126 3.1918 0.0042 9 8 7.9674 2.5852 0.0049 10 8 6.9104 4.5413 0.0037 11 6 8.1826 5.1922 0.0047 12 6 7.9826 6.6859 0.0047 13 8 6.8611 7.1476 0.0044 14 7 9.0501 7.5087 0.0060 15 6 10.4047 6.9510 0.0069 16 6 10.8777 6.7574 -1.4352 17 6 8.8557 8.9607 0.0066 18 6 8.7879 9.4579 1.4275 19 1 8.8800 8.7619 2.2481 20 6 8.6073 10.8013 1.6800 21 7 8.5477 11.2351 2.9201 22 14 8.4474 12.0051 0.2606 23 1 7.0174 12.1379 -0.1170 24 1 8.9754 13.3303 0.6735 25 1 9.2222 11.5042 -0.9030 26 16 4.0741 3.1919 0.0077 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.3880 2.1185 -0.0004 33 1 6.3819 0.4405 0.0030 34 1 8.7393 4.9005 0.8952 35 1 8.7409 4.9000 -0.8847 36 1 11.0791 7.6354 0.5217 37 1 10.4015 5.9894 0.5203 38 1 10.2034 6.0731 -1.9500 39 1 10.8810 7.7189 -1.9487 40 1 11.8858 6.3429 -1.4345 41 1 9.6901 9.4392 -0.5063 42 1 7.9258 9.2030 -0.5080 43 1 8.4210 12.1803 3.0977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770094699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:07 Heat of formation + Delta-G solvation = -63.788719 kcal Electronic energy + Delta-G solvation = -26483.717560 eV Core-core repulsion = 22463.649986 eV Total energy + Delta-G solvation = -4020.067574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75159 -39.93175 -38.95419 -36.95646 -36.28169 -35.37672 -32.75549 -31.90158 -30.49930 -30.16559 -28.96413 -27.00117 -25.43766 -23.96150 -23.02427 -22.65946 -21.84613 -19.84584 -19.58470 -18.62586 -17.61728 -17.11477 -16.93146 -16.63445 -16.17503 -16.04285 -15.91418 -15.45318 -15.22747 -14.81531 -14.39038 -14.27671 -13.90416 -13.53302 -13.46060 -12.97416 -12.85639 -12.57841 -12.42062 -12.40811 -12.27019 -12.16976 -11.83058 -11.69287 -11.45025 -11.00421 -10.86585 -10.74338 -10.66508 -10.52803 -10.49117 -10.16809 -9.99580 -9.64151 -9.55350 -9.07858 -8.59479 -8.16920 -7.80139 -6.09077 -4.08183 0.11125 0.69808 1.41820 2.19212 2.54734 2.68944 2.95121 3.20382 3.29057 3.34927 3.36774 3.86130 4.13314 4.39004 4.41197 4.55567 4.80898 4.81892 4.92387 5.05680 5.21882 5.22497 5.24208 5.26582 5.36164 5.36979 5.46380 5.52953 5.61932 5.69164 5.96541 6.12695 6.27797 6.35031 6.38426 6.52264 6.67500 6.90903 7.26913 7.47544 7.58985 7.72365 8.13647 8.45126 8.84308 8.95015 9.50537 11.04181 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.002339 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.439575 B =11969.515514 C =13220.465167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.681 5.681 4 C 0.315 3.685 5 N -0.557 5.557 6 C 0.200 3.800 7 C -0.347 4.347 8 C 0.553 3.447 9 O -0.512 6.512 10 O -0.327 6.327 11 C 0.052 3.948 12 C 0.510 3.490 13 O -0.518 6.518 14 N -0.588 5.588 15 C 0.101 3.899 16 C -0.171 4.171 17 C 0.218 3.782 18 C -0.530 4.530 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 S 0.202 5.798 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.418 0.582 33 H 0.192 0.808 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 -22.650 -8.496 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.320 5.320 4 C -0.052 4.052 5 N -0.282 5.282 6 C 0.038 3.962 7 C -0.471 4.471 8 C 0.399 3.601 9 O -0.403 6.403 10 O -0.242 6.242 11 C -0.026 4.026 12 C 0.295 3.705 13 O -0.394 6.394 14 N -0.321 5.321 15 C -0.023 4.023 16 C -0.229 4.229 17 C 0.098 3.902 18 C -0.568 4.568 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.190 1.190 26 S 0.455 5.545 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.208 0.792 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.398 -22.030 -8.375 26.180 hybrid contribution 0.672 0.400 -0.514 0.936 sum -10.727 -21.630 -8.889 25.728 Atomic orbital electron populations 1.22038 0.94068 1.03650 1.02814 1.21455 0.94231 0.81441 1.02978 1.44096 1.00370 1.09592 1.77908 1.24197 0.90713 0.94979 0.95306 1.66313 0.99521 1.34561 1.27819 1.22196 0.93176 0.91277 0.89543 1.23276 0.95448 0.96929 1.31474 1.18053 0.87875 0.80823 0.73317 1.90892 1.32269 1.69321 1.47838 1.86230 1.34004 1.19876 1.84069 1.22527 0.83712 0.91997 1.04334 1.19733 0.85607 0.86777 0.78364 1.90706 1.23182 1.76956 1.48540 1.47858 1.04411 1.08121 1.71717 1.21541 0.84648 0.99460 0.96609 1.22244 1.00950 1.02269 0.97469 1.19694 0.97347 0.74658 0.98496 1.21321 1.50546 0.93771 0.91209 0.90673 1.24858 0.94458 0.98115 0.95596 1.69898 1.49729 1.15200 1.18626 0.86848 0.79147 0.80771 0.82906 1.19883 1.21060 1.19047 1.84658 0.96995 1.02950 1.69937 0.90282 0.91723 0.91767 0.91025 0.91000 0.74429 0.79152 0.88626 0.88832 0.89211 0.91298 0.92990 0.92032 0.91683 0.94898 0.94442 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.03 37.16 0.37 -0.10 16 2 C 0.12 0.65 6.64 -4.04 -0.03 0.62 16 3 N -0.68 -4.46 5.68 -62.40 -0.35 -4.82 16 4 C 0.32 3.08 8.05 -87.99 -0.71 2.37 16 5 N -0.56 -6.17 10.06 -14.75 -0.15 -6.32 16 6 C 0.20 2.29 11.08 -18.49 -0.20 2.09 16 7 C -0.35 -4.60 6.32 -38.76 -0.25 -4.84 16 8 C 0.55 8.64 7.73 32.07 0.25 8.89 16 9 O -0.51 -8.42 16.55 -19.40 -0.32 -8.74 16 10 O -0.33 -5.73 9.44 -47.93 -0.45 -6.18 16 11 C 0.05 0.87 4.41 36.01 0.16 1.03 16 12 C 0.51 10.76 7.75 -10.98 -0.09 10.67 16 13 O -0.52 -13.15 16.08 -14.35 -0.23 -13.38 16 14 N -0.59 -12.10 2.46 -175.07 -0.43 -12.53 16 15 C 0.10 1.57 5.93 -4.05 -0.02 1.55 16 16 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 17 C 0.22 5.30 4.23 -5.20 -0.02 5.28 16 18 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 22 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 26 S 0.20 2.29 22.99 -107.50 -2.47 -0.18 16 27 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.42 1.81 8.59 -40.82 -0.35 1.46 16 33 H 0.19 1.83 8.04 -52.49 -0.42 1.40 16 34 H 0.10 1.47 7.39 -51.93 -0.38 1.08 16 35 H 0.09 1.34 7.17 -51.93 -0.37 0.96 16 36 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 37 H 0.07 0.92 6.44 -51.93 -0.33 0.59 16 38 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 42 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -36.76 383.50 -9.05 -45.81 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.93 Total: -1.66 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.60 Total: 12.24 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.16 Total: -50.50 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.00 Total: -28.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.47 Total: -0.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.76 -9.05 -45.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770094699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.974 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds