Wall clock time and date at job start Tue Mar 31 2020 23:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47433 * 2 1 4 4 C 1.37796 * 120.00250 * 180.02562 * 3 2 1 5 5 N 1.30272 * 124.73897 * 359.97007 * 4 3 2 6 6 C 1.30818 * 117.27383 * 179.97438 * 5 4 3 7 7 C 1.36830 * 114.01642 * 0.02562 * 6 5 4 8 8 C 1.41737 * 126.11389 * 179.97438 * 7 6 5 9 9 O 1.21680 * 120.00379 * 359.97438 * 8 7 6 10 10 O 1.34956 * 119.99932 * 179.97438 * 8 7 6 11 11 C 1.42890 * 117.00116 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46943 * 30.00618 * 11 10 8 13 13 C 1.52998 * 109.47635 * 270.00113 * 11 10 8 14 14 C 1.50704 * 109.46969 * 149.99993 * 11 10 8 15 15 O 1.21274 * 119.99921 * 16.03396 * 14 11 10 16 16 N 1.34777 * 120.00026 * 196.03190 * 14 11 10 17 17 C 1.46505 * 120.00097 * 5.36531 * 16 14 11 18 18 C 1.46497 * 120.00271 * 185.37023 * 16 14 11 19 19 C 1.50697 * 109.47565 * 89.99671 * 18 16 14 20 20 H 1.08002 * 120.00096 * 359.97438 * 19 18 16 21 21 C 1.37875 * 120.00044 * 180.02562 * 19 18 16 22 22 N 1.31519 * 119.99880 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99904 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47091 * 119.99755 * 23 21 19 26 26 H 1.48502 * 109.47030 * 239.99809 * 23 21 19 27 27 S 1.70916 * 124.74258 * 180.24977 * 4 3 2 28 28 H 1.08994 * 109.46932 * 59.99509 * 1 2 3 29 29 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46538 * 300.00165 * 1 2 3 31 31 H 1.09001 * 109.46538 * 239.99835 * 2 1 3 32 32 H 1.08994 * 109.46932 * 120.00491 * 2 1 3 33 33 H 0.96999 * 119.99996 * 0.02562 * 3 2 1 34 34 H 1.08001 * 122.99278 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.47116 * 306.14100 * 13 11 10 36 36 H 1.08994 * 109.47696 * 186.13160 * 13 11 10 37 37 H 1.09006 * 109.46975 * 66.13813 * 13 11 10 38 38 H 1.09000 * 109.47126 * 84.82209 * 17 16 14 39 39 H 1.08997 * 109.47350 * 204.82615 * 17 16 14 40 40 H 1.09000 * 109.46993 * 324.82289 * 17 16 14 41 41 H 1.08993 * 109.47299 * 209.99968 * 18 16 14 42 42 H 1.09006 * 109.46411 * 329.99554 * 18 16 14 43 43 H 0.96999 * 119.99462 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3732 1.6329 -0.0005 5 7 4.2987 0.7161 -0.0005 6 6 5.5429 1.1202 -0.0016 7 6 5.6864 2.4809 -0.0020 8 6 6.9128 3.1916 -0.0027 9 8 7.9676 2.5849 -0.0024 10 8 6.9106 4.5411 -0.0036 11 6 8.1827 5.1919 -0.0036 12 1 8.9117 4.5647 -0.5169 13 6 8.6364 5.4252 1.4388 14 6 8.0698 6.5156 -0.7150 15 8 6.9783 7.0034 -0.9185 16 7 9.1818 7.1574 -1.1250 17 6 10.4914 6.5158 -0.9853 18 6 9.0809 8.4966 -1.7102 19 6 9.1904 9.5310 -0.6197 20 1 9.3215 9.2218 0.4068 21 6 9.1221 10.8721 -0.9323 22 7 8.9620 11.2487 -2.1822 23 14 9.2571 12.1543 0.4195 24 1 9.4307 11.4763 1.7293 25 1 10.4270 13.0301 0.1561 26 1 8.0202 12.9757 0.4480 27 16 4.0742 3.1917 0.0055 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3882 2.1185 0.0004 34 1 6.3820 0.4403 -0.0021 35 1 7.8575 5.9593 1.9828 36 1 9.5518 6.0168 1.4407 37 1 8.8232 4.4654 1.9207 38 1 10.6720 5.8680 -1.8430 39 1 11.2672 7.2800 -0.9374 40 1 10.5095 5.9221 -0.0713 41 1 9.8870 8.6404 -2.4295 42 1 8.1205 8.6011 -2.2150 43 1 8.9143 12.1922 -2.4021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770095988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:15 Heat of formation + Delta-G solvation = -64.908125 kcal Electronic energy + Delta-G solvation = -26743.577528 eV Core-core repulsion = 22723.461413 eV Total energy + Delta-G solvation = -4020.116115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82024 -39.97153 -38.80434 -36.94902 -36.25193 -34.84605 -32.82526 -32.01161 -31.45271 -29.68196 -27.76169 -26.06290 -25.66594 -24.56235 -23.83850 -22.83235 -21.61426 -19.83502 -19.53130 -18.78688 -17.61150 -17.01934 -16.53786 -16.34155 -16.07208 -15.92838 -15.76669 -15.40445 -15.10606 -14.68702 -14.48885 -14.30822 -14.00552 -13.49078 -13.15279 -12.91214 -12.77402 -12.41973 -12.32199 -12.28232 -12.11530 -12.05122 -11.75417 -11.66182 -11.36731 -11.22800 -10.89380 -10.71561 -10.66001 -10.65009 -10.51146 -10.17279 -9.98522 -9.63614 -9.62916 -8.86374 -8.45281 -8.16284 -7.68958 -6.05883 -4.10976 0.12218 0.70252 1.42619 2.20746 2.59515 2.72491 2.97581 3.28115 3.29133 3.37009 3.41574 3.99346 4.14111 4.41204 4.43071 4.55514 4.81586 4.87525 4.93241 5.06502 5.16310 5.20312 5.25132 5.28851 5.36136 5.46121 5.58736 5.62562 5.75297 5.81199 5.90809 6.13097 6.28499 6.29413 6.45614 6.53608 7.01438 7.41946 7.48221 7.49341 7.77240 7.90760 8.20556 8.32534 8.85854 9.01379 9.54129 11.02215 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002287 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.384900 B =12241.647020 C =13128.215323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.682 5.682 4 C 0.315 3.685 5 N -0.557 5.557 6 C 0.199 3.801 7 C -0.345 4.345 8 C 0.552 3.448 9 O -0.512 6.512 10 O -0.323 6.323 11 C 0.071 3.929 12 H 0.102 0.898 13 C -0.166 4.166 14 C 0.511 3.489 15 O -0.521 6.521 16 N -0.597 5.597 17 C 0.074 3.926 18 C 0.245 3.755 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 S 0.200 5.800 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.192 0.808 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 -23.187 5.381 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.320 5.320 4 C -0.052 4.052 5 N -0.282 5.282 6 C 0.037 3.963 7 C -0.470 4.470 8 C 0.398 3.602 9 O -0.403 6.403 10 O -0.238 6.238 11 C 0.012 3.988 12 H 0.120 0.880 13 C -0.223 4.223 14 C 0.295 3.705 15 O -0.397 6.397 16 N -0.330 5.330 17 C -0.070 4.070 18 C 0.126 3.874 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 S 0.453 5.547 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.208 0.792 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.999 -22.562 5.147 26.543 hybrid contribution 0.823 0.466 0.683 1.167 sum -12.177 -22.096 5.830 25.894 Atomic orbital electron populations 1.22039 0.94075 1.03645 1.02804 1.21452 0.94220 0.81453 1.02973 1.44085 1.00366 1.09573 1.77966 1.24186 0.90708 0.94952 0.95369 1.66311 0.99526 1.34554 1.27802 1.22196 0.93167 0.91306 0.89623 1.23296 0.95450 0.96922 1.31302 1.18096 0.87822 0.81219 0.73068 1.90872 1.32283 1.69165 1.47975 1.86307 1.34132 1.19629 1.83727 1.22260 0.84163 0.93543 0.98814 0.88021 1.22194 1.03154 1.03141 0.93818 1.19786 0.85324 0.85271 0.80131 1.90683 1.26426 1.67264 1.55309 1.48068 1.04859 1.19391 1.60695 1.21832 0.86499 0.98403 1.00283 1.19364 0.98908 0.75257 0.93823 1.21473 1.50315 0.90832 0.94045 0.92286 1.24948 0.95037 0.98492 0.95678 1.69948 1.49718 1.16452 1.17124 0.86429 0.77652 0.81311 0.81948 1.19771 1.20952 1.20860 1.84613 0.97074 1.03055 1.69982 0.91737 0.90286 0.91765 0.91012 0.91032 0.74447 0.79170 0.90758 0.89579 0.91231 0.93423 0.90122 0.92190 0.94641 0.93586 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.03 37.16 0.37 -0.09 16 2 C 0.12 0.64 6.64 -4.04 -0.03 0.62 16 3 N -0.68 -4.45 5.68 -62.41 -0.35 -4.80 16 4 C 0.32 3.08 8.05 -87.99 -0.71 2.37 16 5 N -0.56 -6.20 10.06 -14.75 -0.15 -6.35 16 6 C 0.20 2.31 11.08 -18.49 -0.20 2.10 16 7 C -0.35 -4.63 6.32 -38.76 -0.25 -4.87 16 8 C 0.55 8.79 7.69 32.07 0.25 9.04 16 9 O -0.51 -8.54 16.01 -19.40 -0.31 -8.85 16 10 O -0.32 -5.78 9.14 -47.81 -0.44 -6.22 16 11 C 0.07 1.26 2.09 -27.88 -0.06 1.20 16 12 H 0.10 1.65 6.27 -51.93 -0.33 1.33 16 13 C -0.17 -2.49 9.17 37.16 0.34 -2.15 16 14 C 0.51 11.26 6.95 -10.98 -0.08 11.19 16 15 O -0.52 -13.72 16.13 -13.82 -0.22 -13.94 16 16 N -0.60 -12.97 2.86 -182.96 -0.52 -13.49 16 17 C 0.07 1.20 9.79 59.85 0.59 1.78 16 18 C 0.25 6.46 5.18 -5.20 -0.03 6.43 16 19 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 23 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 S 0.20 2.27 22.99 -107.50 -2.47 -0.20 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.42 1.79 8.59 -40.82 -0.35 1.44 16 34 H 0.19 1.86 8.04 -52.49 -0.42 1.43 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 40 H 0.06 0.82 4.92 -51.93 -0.26 0.57 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -35.92 383.70 -9.02 -44.93 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.83 Total: -1.84 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -0.22 Total: 14.01 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.29 Total: -50.43 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.97 Total: -29.02 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.47 Total: -0.20 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.92 -9.02 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770095988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.975 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds