Wall clock time and date at job start Tue Mar 31 2020 23:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.37803 * 119.99814 * 180.02562 * 3 2 1 5 5 N 1.30267 * 124.74338 * 359.97438 * 4 3 2 6 6 C 1.30810 * 117.27719 * 179.97438 * 5 4 3 7 7 C 1.36837 * 114.01729 * 0.02562 * 6 5 4 8 8 C 1.41741 * 126.11710 * 179.97438 * 7 6 5 9 9 O 1.21684 * 119.99794 * 0.02562 * 8 7 6 10 10 O 1.34952 * 119.99640 * 180.02562 * 8 7 6 11 11 C 1.42895 * 116.99509 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47626 * 330.00397 * 11 10 8 13 13 C 1.53006 * 109.47036 * 90.00261 * 11 10 8 14 14 C 1.50699 * 109.47044 * 209.99847 * 11 10 8 15 15 O 1.21276 * 120.00180 * 355.00259 * 14 11 10 16 16 N 1.34778 * 119.99817 * 175.00362 * 14 11 10 17 17 C 1.46502 * 120.00356 * 359.97438 * 16 14 11 18 18 C 1.46510 * 119.99810 * 179.97438 * 16 14 11 19 19 C 1.50700 * 109.47088 * 89.99667 * 18 16 14 20 20 H 1.08002 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.37870 * 120.00259 * 179.97438 * 19 18 16 22 22 N 1.31520 * 119.99933 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00316 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47056 * 59.99985 * 23 21 19 25 25 H 1.48503 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46917 * 299.99821 * 23 21 19 27 27 S 1.70920 * 124.73877 * 180.24798 * 4 3 2 28 28 H 1.08992 * 109.47042 * 59.99161 * 1 2 3 29 29 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46546 * 299.99892 * 1 2 3 31 31 H 1.09006 * 109.46546 * 240.00108 * 2 1 3 32 32 H 1.09005 * 109.47167 * 120.00593 * 2 1 3 33 33 H 0.96998 * 120.00353 * 0.02562 * 3 2 1 34 34 H 1.08006 * 122.99542 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99477 * 13 11 10 36 36 H 1.08993 * 109.46955 * 59.99914 * 13 11 10 37 37 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 38 38 H 1.08999 * 109.46601 * 90.00278 * 17 16 14 39 39 H 1.09000 * 109.46861 * 210.00048 * 17 16 14 40 40 H 1.09002 * 109.46766 * 330.00032 * 17 16 14 41 41 H 1.08994 * 109.47027 * 209.99740 * 18 16 14 42 42 H 1.09002 * 109.47025 * 330.00346 * 18 16 14 43 43 H 0.97002 * 120.00073 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3732 1.6329 -0.0005 5 7 4.2987 0.7161 -0.0006 6 6 5.5428 1.1202 -0.0016 7 6 5.6864 2.4810 -0.0020 8 6 6.9128 3.1917 -0.0026 9 8 7.9676 2.5849 -0.0033 10 8 6.9105 4.5412 -0.0024 11 6 8.1827 5.1919 -0.0024 12 1 8.9116 4.5650 0.5111 13 6 8.6366 5.4245 -1.4450 14 6 8.0696 6.5160 0.7082 15 8 6.9876 6.9092 1.0893 16 7 9.1711 7.2633 0.9200 17 6 10.4784 6.7881 0.4601 18 6 9.0611 8.5509 1.6104 19 6 9.2252 8.3412 3.0937 20 1 9.3950 7.3483 3.4832 21 6 9.1598 9.4170 3.9534 22 7 8.9536 10.6262 3.4791 23 14 9.3640 9.1572 5.7920 24 1 10.6973 8.5623 6.0627 25 1 9.2523 10.4623 6.4917 26 1 8.3039 8.2406 6.2831 27 16 4.0742 3.1917 0.0055 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.3881 2.1185 0.0004 34 1 6.3820 0.4403 -0.0014 35 1 8.7184 4.4667 -1.9590 36 1 7.9077 6.0514 -1.9586 37 1 9.6068 5.9213 -1.4451 38 1 10.6564 7.1413 -0.5556 39 1 11.2569 7.1713 1.1198 40 1 10.4942 5.6983 0.4739 41 1 9.8392 9.2238 1.2503 42 1 8.0823 8.9874 1.4113 43 1 8.9079 11.3832 4.0839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770095989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:18 Heat of formation + Delta-G solvation = -63.125840 kcal Electronic energy + Delta-G solvation = -26786.061135 eV Core-core repulsion = 22766.022306 eV Total energy + Delta-G solvation = -4020.038829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80901 -39.96025 -38.81244 -36.93293 -36.23382 -34.87885 -32.87535 -31.98408 -31.43186 -29.67496 -27.67383 -26.16174 -25.64056 -24.54987 -23.83203 -22.81617 -21.61426 -19.81795 -19.52924 -18.81277 -17.61157 -17.01147 -16.51299 -16.31252 -16.08663 -15.89815 -15.75515 -15.39560 -15.17873 -14.63897 -14.47909 -14.27585 -13.94778 -13.47977 -13.25529 -12.92317 -12.80354 -12.40701 -12.35994 -12.27295 -12.13529 -12.05557 -11.74027 -11.59996 -11.37376 -11.17286 -10.91411 -10.69634 -10.64205 -10.61788 -10.50921 -10.15730 -9.96806 -9.64979 -9.61618 -8.85663 -8.43162 -8.14457 -7.69854 -6.04419 -4.09234 0.14148 0.71999 1.44370 2.22731 2.60821 2.73793 2.99799 3.30591 3.33407 3.37108 3.41998 3.97924 4.15870 4.42529 4.45189 4.56738 4.82764 4.86050 4.93792 5.04316 5.15290 5.16467 5.26160 5.30116 5.37431 5.47182 5.59386 5.64352 5.71490 5.73638 5.89603 6.05229 6.26083 6.30279 6.46436 6.55138 7.00967 7.40844 7.48927 7.50113 7.78896 7.91896 8.21918 8.32417 8.87023 9.02180 9.55679 11.03625 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.002464 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.000676 B =11362.484254 C =12434.590872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.682 5.682 4 C 0.315 3.685 5 N -0.557 5.557 6 C 0.199 3.801 7 C -0.344 4.344 8 C 0.553 3.447 9 O -0.511 6.511 10 O -0.322 6.322 11 C 0.070 3.930 12 H 0.105 0.895 13 C -0.171 4.171 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.596 5.596 17 C 0.076 3.924 18 C 0.247 3.753 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 S 0.200 5.800 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.418 0.582 34 H 0.192 0.808 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -20.075 -11.680 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.320 5.320 4 C -0.052 4.052 5 N -0.282 5.282 6 C 0.037 3.963 7 C -0.469 4.469 8 C 0.399 3.601 9 O -0.403 6.403 10 O -0.237 6.237 11 C 0.011 3.989 12 H 0.123 0.877 13 C -0.228 4.228 14 C 0.293 3.707 15 O -0.395 6.395 16 N -0.330 5.330 17 C -0.068 4.068 18 C 0.129 3.871 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 S 0.453 5.547 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.208 0.792 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.022 -19.459 -11.403 26.044 hybrid contribution 0.854 -0.432 1.095 1.455 sum -12.168 -19.892 -10.308 25.495 Atomic orbital electron populations 1.22038 0.94084 1.03638 1.02795 1.21452 0.94210 0.81465 1.02974 1.44079 1.00360 1.09559 1.78016 1.24182 0.90704 0.94940 0.95399 1.66301 0.99528 1.34561 1.27786 1.22195 0.93165 0.91312 0.89636 1.23294 0.95437 0.96919 1.31242 1.18082 0.87827 0.81187 0.73043 1.90875 1.32289 1.69147 1.47963 1.86290 1.34026 1.19678 1.83717 1.22225 0.84322 0.93778 0.98543 0.87721 1.22311 1.03223 1.03317 0.93962 1.19791 0.85268 0.85046 0.80574 1.90695 1.26884 1.71359 1.50610 1.48065 1.05425 1.22579 1.56884 1.21843 0.86658 0.98957 0.99294 1.19339 0.98826 0.77728 0.91255 1.21394 1.49795 0.93943 0.91582 0.92471 1.24930 0.95023 0.94988 0.99122 1.69923 1.49329 0.98729 1.35363 0.86547 0.78683 0.77343 0.84798 1.20209 1.21146 1.20160 1.84582 0.97084 1.03101 1.69968 0.91782 0.90293 0.91728 0.91037 0.91012 0.74459 0.79167 0.91275 0.91083 0.89390 0.93144 0.90337 0.92277 0.94621 0.93667 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.03 37.16 0.37 -0.12 16 2 C 0.12 0.67 6.64 -4.04 -0.03 0.65 16 3 N -0.68 -4.61 5.68 -62.40 -0.35 -4.97 16 4 C 0.32 3.17 8.05 -87.99 -0.71 2.46 16 5 N -0.56 -6.38 10.06 -14.75 -0.15 -6.53 16 6 C 0.20 2.38 11.08 -18.49 -0.20 2.17 16 7 C -0.34 -4.74 6.33 -38.75 -0.25 -4.99 16 8 C 0.55 9.01 7.69 32.07 0.25 9.26 16 9 O -0.51 -8.77 16.01 -19.41 -0.31 -9.08 16 10 O -0.32 -5.82 9.10 -47.93 -0.44 -6.26 16 11 C 0.07 1.23 2.12 -27.88 -0.06 1.18 16 12 H 0.11 1.77 6.10 -51.93 -0.32 1.45 16 13 C -0.17 -2.34 9.26 37.16 0.34 -2.00 16 14 C 0.51 11.21 7.10 -10.99 -0.08 11.13 16 15 O -0.52 -13.75 16.09 -14.30 -0.23 -13.98 16 16 N -0.60 -12.88 2.86 -182.95 -0.52 -13.41 16 17 C 0.08 1.22 8.92 59.85 0.53 1.75 16 18 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 19 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 23 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 S 0.20 2.32 22.99 -107.50 -2.47 -0.15 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.42 1.88 8.59 -40.82 -0.35 1.52 16 34 H 0.19 1.93 8.04 -52.48 -0.42 1.51 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.06 5.12 -51.93 -0.27 0.79 16 38 H 0.05 0.67 7.02 -51.93 -0.36 0.30 16 39 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.06 0.81 6.08 -51.93 -0.32 0.49 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -36.36 381.75 -9.04 -45.40 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.76 Total: -2.11 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -0.27 Total: 14.17 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.29 Total: -50.81 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.98 Total: -29.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.36 -9.04 -45.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770095989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.729 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds