Wall clock time and date at job start Tue Mar 31 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21733 * 119.99255 * 2 1 4 4 N 1.32250 * 120.00633 * 179.97438 * 2 1 3 5 5 C 1.34735 * 120.00161 * 244.62728 * 4 2 1 6 6 C 1.41022 * 120.71371 * 5.46864 * 5 4 2 7 7 C 1.35417 * 119.34771 * 180.29763 * 6 5 4 8 8 N 1.34774 * 120.89295 * 359.69013 * 7 6 5 9 9 H 0.96998 * 119.23091 * 180.02562 * 8 7 6 10 10 C 1.35541 * 121.54786 * 0.02562 * 8 7 6 11 11 C 1.35983 * 120.56444 * 0.02718 * 10 8 7 12 12 N 1.40126 * 120.46637 * 179.97438 * 11 10 8 13 13 C 1.34778 * 119.99603 * 325.36508 * 12 11 10 14 14 O 1.21605 * 120.00158 * 4.44623 * 13 12 11 15 15 C 1.47510 * 119.99704 * 184.44176 * 13 12 11 16 16 C 1.39678 * 120.19933 * 0.02562 * 15 13 12 17 17 C 1.37828 * 119.91728 * 180.25724 * 16 15 13 18 18 C 1.38575 * 120.32424 * 359.44048 * 17 16 15 19 19 C 1.38033 * 120.40236 * 0.56417 * 18 17 16 20 20 C 1.38827 * 120.07005 * 359.71774 * 19 18 17 21 21 O 1.35529 * 120.15604 * 180.02562 * 20 19 18 22 22 C 1.34811 * 117.00218 * 354.59853 * 21 20 19 23 23 H 1.08003 * 119.99570 * 5.04002 * 22 21 20 24 24 C 1.38695 * 119.99990 * 185.04044 * 22 21 20 25 25 N 1.31519 * 119.99944 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99953 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47303 * 90.00371 * 26 24 22 28 28 H 1.48497 * 109.47093 * 210.00481 * 26 24 22 29 29 H 1.48500 * 109.47116 * 330.00007 * 26 24 22 30 30 H 1.08996 * 109.47575 * 269.99750 * 1 2 3 31 31 H 1.08998 * 109.47248 * 30.00431 * 1 2 3 32 32 H 1.09000 * 109.46715 * 150.00271 * 1 2 3 33 33 H 1.07997 * 120.32496 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.55504 * 179.70240 * 7 6 5 35 35 H 1.07998 * 119.72157 * 180.02562 * 10 8 7 36 36 H 0.96997 * 120.00123 * 145.36684 * 12 11 10 37 37 H 1.08003 * 120.03923 * 359.97438 * 16 15 13 38 38 H 1.08005 * 119.83352 * 179.72315 * 17 16 15 39 39 H 1.07994 * 119.79536 * 180.30459 * 18 17 16 40 40 H 1.07991 * 119.96200 * 179.74705 * 19 18 17 41 41 H 0.96996 * 119.99896 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1155 1.0543 0.0000 4 7 2.1684 -1.1452 0.0005 5 6 2.9383 -1.4781 1.0549 6 6 2.9607 -0.6736 2.2129 7 6 3.7492 -1.0310 3.2542 8 7 4.5050 -2.1455 3.1992 9 1 5.0608 -2.3789 3.9592 10 6 4.5069 -2.9479 2.1069 11 6 3.7387 -2.6464 1.0261 12 7 3.7426 -3.4772 -0.1024 13 6 4.8756 -4.1068 -0.4717 14 8 5.8728 -4.0190 0.2188 15 6 4.9060 -4.9025 -1.7134 16 6 3.7632 -5.0057 -2.5098 17 6 3.7966 -5.7551 -3.6661 18 6 4.9626 -6.3982 -4.0497 19 6 6.0997 -6.3052 -3.2726 20 6 6.0830 -5.5596 -2.1017 21 8 7.1985 -5.4667 -1.3377 22 6 8.2588 -6.2116 -1.7096 23 1 8.2231 -6.7821 -2.6260 24 6 9.3954 -6.2452 -0.9155 25 7 9.4386 -5.5508 0.2006 26 14 10.8644 -7.2779 -1.4304 27 1 11.7762 -6.4585 -2.2684 28 1 11.5892 -7.7452 -0.2215 29 1 10.3955 -8.4512 -2.2107 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3582 0.2211 2.2671 34 1 3.7726 -0.4147 4.1408 35 1 5.1237 -3.8343 2.0947 36 1 2.9300 -3.5990 -0.6177 37 1 2.8532 -4.5028 -2.2175 38 1 2.9109 -5.8377 -4.2786 39 1 4.9806 -6.9791 -4.9599 40 1 7.0033 -6.8126 -3.5762 41 1 10.2333 -5.5747 0.7562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776896027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:35 Heat of formation + Delta-G solvation = 3.853115 kcal Electronic energy + Delta-G solvation = -28731.942646 eV Core-core repulsion = 24579.364291 eV Total energy + Delta-G solvation = -4152.578355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16508 -39.63831 -38.99616 -38.22397 -36.40697 -35.41117 -33.94963 -32.40593 -31.33410 -31.15840 -29.70570 -29.01232 -28.84935 -25.48087 -24.45898 -23.82617 -22.64825 -21.45540 -20.15865 -19.66939 -19.16825 -18.07636 -17.82589 -16.89146 -16.80837 -16.22163 -16.02739 -15.22850 -14.82929 -14.72912 -14.53293 -14.45796 -14.19125 -14.09679 -14.05741 -13.77410 -13.47566 -13.27563 -12.79109 -12.60925 -12.55983 -12.29383 -11.95658 -11.77356 -11.47079 -11.33323 -11.17113 -10.94975 -10.82639 -10.51341 -10.30787 -10.26502 -9.66184 -9.11172 -8.94050 -8.93668 -8.79871 -8.33465 -7.39185 -7.14985 -6.52571 -4.11134 0.84184 1.17146 1.66888 2.28969 2.50177 2.71108 3.07960 3.08155 3.12863 3.39481 3.47218 3.78936 3.87962 4.27944 4.40394 4.56793 4.85514 5.00119 5.02820 5.03294 5.11087 5.29696 5.41785 5.45917 5.48903 5.60427 5.66068 5.71994 5.83083 5.96960 6.05987 6.08692 6.49972 6.52765 6.58546 6.65239 6.79373 6.86738 7.02590 7.08056 7.19012 7.25018 7.64734 7.83069 7.85429 7.94853 8.47205 8.82782 8.89459 9.59533 10.61504 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012725 B = 0.003312 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.779091 B = 8451.300133 C =10191.955227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.498 3.502 3 O -0.543 6.543 4 N -0.657 5.657 5 C 0.316 3.684 6 C -0.266 4.266 7 C 0.144 3.856 8 N -0.561 5.561 9 H 0.427 0.573 10 C 0.103 3.897 11 C 0.082 3.918 12 N -0.655 5.655 13 C 0.556 3.444 14 O -0.497 6.497 15 C -0.229 4.229 16 C -0.033 4.033 17 C -0.227 4.227 18 C -0.048 4.048 19 C -0.237 4.237 20 C 0.193 3.807 21 O -0.125 6.125 22 C -0.402 4.402 23 H 0.094 0.906 24 C 0.046 3.954 25 N -0.835 5.835 26 Si 0.940 3.060 27 H -0.272 1.272 28 H -0.276 1.276 29 H -0.266 1.266 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.169 0.831 35 H 0.194 0.806 36 H 0.414 0.586 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 2.393 7.136 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.286 3.714 3 O -0.422 6.422 4 N -0.396 5.396 5 C 0.161 3.839 6 C -0.296 4.296 7 C 0.010 3.990 8 N -0.163 5.163 9 H 0.263 0.737 10 C -0.030 4.030 11 C -0.021 4.021 12 N -0.303 5.303 13 C 0.348 3.652 14 O -0.372 6.372 15 C -0.234 4.234 16 C -0.052 4.052 17 C -0.246 4.246 18 C -0.066 4.066 19 C -0.257 4.257 20 C 0.133 3.867 21 O -0.023 6.023 22 C -0.477 4.477 23 H 0.112 0.888 24 C -0.162 4.162 25 N -0.467 5.467 26 Si 0.765 3.235 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.190 1.190 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.210 0.790 36 H 0.252 0.748 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.825 2.925 7.109 14.104 hybrid contribution 0.415 -0.106 -0.091 0.438 sum -11.410 2.819 7.017 13.689 Atomic orbital electron populations 1.21976 0.93959 1.04127 1.03515 1.21311 0.91622 0.85629 0.72819 1.90766 1.71951 1.35172 1.44269 1.67978 1.21787 1.23199 1.26620 1.18592 0.85900 0.89780 0.89654 1.21353 1.08734 1.04865 0.94654 1.21733 0.90165 0.87430 0.99700 1.40929 1.38014 1.20372 1.16985 0.73683 1.22234 1.00153 0.96231 0.84427 1.16685 1.02926 0.93574 0.88915 1.43151 1.13884 1.46152 1.27115 1.18418 0.81840 0.79151 0.85762 1.90871 1.32932 1.60004 1.53363 1.18615 0.94225 1.11319 0.99193 1.20836 0.95471 0.95372 0.93541 1.20495 0.98512 1.05895 0.99746 1.20937 0.92457 0.95823 0.97408 1.21159 1.00093 1.07020 0.97390 1.19228 0.86721 0.91000 0.89739 1.84149 1.16971 1.55571 1.45609 1.21504 0.91540 1.26207 1.08478 0.88830 1.25356 0.98467 0.97326 0.95046 1.70107 1.28763 1.36583 1.11219 0.85728 0.79985 0.79423 0.78411 1.19734 1.20144 1.19026 0.89637 0.90428 0.90006 0.83715 0.81342 0.78969 0.74815 0.86662 0.87055 0.87058 0.84984 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 10.38 36.01 0.37 -1.67 16 2 C 0.50 8.27 6.00 -12.10 -0.07 8.20 16 3 O -0.54 -10.89 17.10 5.16 0.09 -10.80 16 4 N -0.66 -11.16 10.05 -10.31 -0.10 -11.26 16 5 C 0.32 4.86 6.59 -84.24 -0.56 4.30 16 6 C -0.27 -3.18 9.04 -39.53 -0.36 -3.54 16 7 C 0.14 1.12 11.14 -17.27 -0.19 0.93 16 8 N -0.56 -4.63 5.21 -13.01 -0.07 -4.70 16 9 H 0.43 1.92 8.89 -40.82 -0.36 1.55 16 10 C 0.10 1.35 9.88 -16.72 -0.17 1.19 16 11 C 0.08 1.27 6.33 -83.57 -0.53 0.74 16 12 N -0.66 -11.06 5.15 -10.74 -0.06 -11.11 16 13 C 0.56 11.61 7.61 -12.48 -0.09 11.51 16 14 O -0.50 -12.10 12.61 -16.58 -0.21 -12.31 16 15 C -0.23 -4.83 5.89 -104.81 -0.62 -5.44 16 16 C -0.03 -0.58 9.53 -39.19 -0.37 -0.95 16 17 C -0.23 -3.71 10.02 -39.61 -0.40 -4.11 16 18 C -0.05 -0.82 10.03 -39.53 -0.40 -1.22 16 19 C -0.24 -4.95 9.16 -39.44 -0.36 -5.31 16 20 C 0.19 4.61 6.66 -38.60 -0.26 4.35 16 21 O -0.12 -3.51 7.84 -21.07 -0.17 -3.68 16 22 C -0.40 -10.92 9.49 30.90 0.29 -10.63 16 23 H 0.09 2.32 5.21 -52.48 -0.27 2.05 16 24 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 25 N -0.84 -23.86 13.67 55.48 0.76 -23.10 16 26 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 27 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 28 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 29 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.15 1.73 6.72 -52.49 -0.35 1.38 16 34 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.19 2.84 6.15 -52.49 -0.32 2.52 16 36 H 0.41 6.24 6.65 -40.82 -0.27 5.97 16 37 H 0.12 1.62 6.41 -52.48 -0.34 1.29 16 38 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -38.29 358.31 -7.06 -45.35 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -3.89 Total: 11.96 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.80 Total: -0.52 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.53 Total: -50.18 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.29 Total: -26.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.29 -7.06 -45.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776896027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.207 kcal (2) G-P(sol) polarization free energy of solvation -38.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds