Wall clock time and date at job start Tue Mar 31 2020 23:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47168 * 2 1 4 4 C 1.50692 * 109.47468 * 120.00390 * 2 1 3 5 5 H 1.07998 * 120.00517 * 119.99870 * 4 2 1 6 6 C 1.37887 * 119.99725 * 299.99693 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47003 * 90.00339 * 8 6 4 10 10 H 1.48501 * 109.46891 * 210.00298 * 8 6 4 11 11 H 1.48501 * 109.47193 * 330.00392 * 8 6 4 12 12 O 1.42902 * 109.46917 * 240.00314 * 2 1 3 13 13 C 1.34947 * 116.99934 * 89.99995 * 12 2 1 14 14 O 1.21663 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.46288 * 119.99905 * 179.72318 * 13 12 2 16 16 C 1.36435 * 125.55732 * 179.97438 * 15 13 12 17 17 C 1.40620 * 107.60112 * 179.84756 * 16 15 13 18 18 C 1.41197 * 107.31353 * 0.41493 * 17 16 15 19 19 N 1.33016 * 119.34246 * 179.74879 * 18 17 16 20 20 C 1.33030 * 121.51122 * 359.97274 * 19 18 17 21 21 C 1.40927 * 119.02735 * 180.02562 * 20 19 18 22 22 C 1.36157 * 119.53934 * 180.02562 * 21 20 19 23 23 C 1.40295 * 119.63066 * 0.02562 * 22 21 20 24 24 C 1.35070 * 120.14050 * 359.97438 * 23 22 21 25 25 N 1.36466 * 120.77342 * 0.04550 * 24 23 22 26 26 C 1.35196 * 119.26548 * 179.97438 * 25 24 23 27 27 O 1.21856 * 120.71736 * 0.02562 * 26 25 24 28 28 N 1.36625 * 107.38313 * 359.74833 * 18 17 16 29 29 C 1.46503 * 125.59311 * 180.02562 * 28 18 17 30 30 H 1.08996 * 109.47366 * 59.99765 * 1 2 3 31 31 H 1.08999 * 109.47434 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46961 * 299.99645 * 1 2 3 33 33 H 0.96994 * 119.99683 * 180.02562 * 7 6 4 34 34 H 1.08002 * 126.19346 * 0.02562 * 16 15 13 35 35 H 1.07998 * 120.22419 * 359.97438 * 21 20 19 36 36 H 1.08000 * 120.17815 * 180.02562 * 22 21 20 37 37 H 1.07996 * 119.93383 * 179.97438 * 23 22 21 38 38 H 1.07995 * 119.61555 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.47226 * 269.99839 * 29 28 18 40 40 H 1.09005 * 109.47163 * 29.99946 * 29 28 18 41 41 H 1.08999 * 109.47309 * 149.99479 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4122 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5663 3.7118 12 8 2.0062 -0.6736 -1.1668 13 6 2.2104 0.0790 -2.2682 14 8 1.9891 1.2749 -2.2374 15 6 2.7031 -0.5423 -3.4976 16 6 2.9480 0.1075 -4.6720 17 6 3.4106 -0.8454 -5.5968 18 6 3.4265 -2.0952 -4.9400 19 7 3.8246 -3.1761 -5.6052 20 6 4.2082 -3.1077 -6.8772 21 6 4.6196 -4.2860 -7.5317 22 6 5.0148 -4.2278 -8.8333 23 6 5.0082 -2.9966 -9.5059 24 6 4.6112 -1.8759 -8.8650 25 7 4.2132 -1.9213 -7.5605 26 6 3.8224 -0.7808 -6.9486 27 8 3.8225 0.2794 -7.5494 28 7 2.9918 -1.8898 -3.6611 29 6 2.8538 -2.9225 -2.6312 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7089 1.1612 3.4844 34 1 2.8138 1.1631 -4.8568 35 1 4.6220 -5.2283 -7.0041 36 1 5.3317 -5.1246 -9.3450 37 1 5.3211 -2.9448 -10.5382 38 1 4.6091 -0.9327 -9.3911 39 1 1.8521 -3.3499 -2.6771 40 1 3.5915 -3.7067 -2.8018 41 1 3.0151 -2.4795 -1.6485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784510665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:06 Heat of formation + Delta-G solvation = -0.471085 kcal Electronic energy + Delta-G solvation = -28795.950389 eV Core-core repulsion = 24643.184523 eV Total energy + Delta-G solvation = -4152.765867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.95539 -41.00204 -39.29981 -38.52634 -36.37013 -35.91884 -34.19365 -33.35586 -32.87256 -30.99393 -29.76561 -28.89538 -26.96249 -25.83109 -25.35216 -24.11882 -23.47567 -22.71523 -20.74283 -19.75032 -19.43690 -18.87802 -17.73615 -17.09062 -16.93430 -16.75169 -16.32041 -15.74072 -15.63942 -15.56711 -15.10025 -14.66928 -14.63820 -14.42891 -14.05401 -13.72226 -13.46707 -13.06709 -12.84847 -12.73512 -12.46767 -12.36372 -12.22233 -11.88227 -11.48332 -11.22446 -11.10657 -10.99400 -10.90605 -10.69600 -10.42076 -10.34680 -10.15363 -10.00090 -9.61875 -9.30358 -9.03397 -8.94970 -8.53764 -7.44820 -6.22868 -4.30762 -0.14813 0.44081 1.38122 1.84247 1.98164 2.26775 2.50403 3.21248 3.25925 3.29229 3.45431 3.48625 3.61067 3.73199 4.00425 4.16566 4.28843 4.34369 4.51916 4.62302 4.75367 5.09461 5.10629 5.14805 5.31682 5.37898 5.44820 5.55298 5.63702 5.64650 5.73191 6.01107 6.02346 6.23098 6.26521 6.56417 6.68887 6.83668 6.85759 6.87132 7.05226 7.43018 7.52174 7.57110 7.66704 7.84795 8.06844 8.51575 8.79790 9.34975 10.84489 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.002533 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.065544 B =11052.315523 C =11912.031988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.886 5.886 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.346 6.346 13 C 0.525 3.475 14 O -0.498 6.498 15 C 0.004 3.996 16 C -0.027 4.027 17 C -0.304 4.304 18 C 0.336 3.664 19 N -0.534 5.534 20 C 0.415 3.585 21 C -0.136 4.136 22 C -0.036 4.036 23 C -0.184 4.184 24 C 0.109 3.891 25 N -0.451 5.451 26 C 0.563 3.437 27 O -0.512 6.512 28 N -0.408 5.408 29 C 0.067 3.933 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.267 0.733 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 -12.716 -23.452 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.159 3.841 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.263 6.263 13 C 0.368 3.632 14 O -0.387 6.387 15 C -0.102 4.102 16 C -0.052 4.052 17 C -0.315 4.315 18 C 0.101 3.899 19 N -0.262 5.262 20 C 0.165 3.835 21 C -0.158 4.158 22 C -0.060 4.060 23 C -0.206 4.206 24 C -0.013 4.013 25 N -0.159 5.159 26 C 0.365 3.635 27 O -0.388 6.388 28 N -0.088 5.088 29 C -0.073 4.073 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.589 -12.293 -22.492 26.732 hybrid contribution 0.137 0.341 0.609 0.711 sum 7.726 -11.952 -21.883 26.104 Atomic orbital electron populations 1.22193 0.97542 1.00110 1.01554 1.20324 0.91545 0.94376 0.77879 0.93479 1.20973 1.32718 1.13530 0.88774 0.91377 1.24893 0.94850 0.95085 0.99087 1.69895 1.35747 1.22470 1.24258 0.86278 0.78587 0.79830 0.81458 1.20388 1.20922 1.19611 1.86165 1.76065 1.43021 1.21021 1.19539 0.75322 0.85103 0.83197 1.90885 1.48813 1.15089 1.83939 1.19455 1.13563 0.81791 0.95433 1.20514 0.96641 0.99500 0.88552 1.19110 1.21701 0.95937 0.94791 1.18136 0.96104 0.89660 0.85952 1.67595 1.25876 1.28210 1.04479 1.19999 0.91728 0.84944 0.86878 1.20874 1.03589 0.96238 0.95051 1.21447 0.92603 0.98542 0.93446 1.20901 1.06179 0.91397 1.02127 1.22265 0.93711 1.02127 0.83171 1.44040 1.49640 1.10313 1.11891 1.16384 0.78222 0.82139 0.86767 1.90905 1.54055 1.26870 1.66990 1.44072 1.49028 1.07786 1.07952 1.22466 1.03628 0.89868 0.91340 0.96435 0.94463 0.88209 0.92319 0.81775 0.81893 0.83296 0.82699 0.80437 0.90066 0.89352 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.31 37.16 0.35 -3.56 16 2 C 0.21 5.54 2.51 -27.89 -0.07 5.47 16 3 H 0.05 1.38 7.11 -51.92 -0.37 1.01 16 4 C -0.52 -14.17 8.89 -34.44 -0.31 -14.48 16 5 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 O -0.35 -7.95 7.08 -41.17 -0.29 -8.24 16 13 C 0.52 11.43 7.86 33.97 0.27 11.70 16 14 O -0.50 -12.07 16.08 -19.39 -0.31 -12.39 16 15 C 0.00 0.07 6.82 -82.14 -0.56 -0.49 16 16 C -0.03 -0.47 10.52 -39.33 -0.41 -0.89 16 17 C -0.30 -4.98 6.13 -106.65 -0.65 -5.64 16 18 C 0.34 5.26 7.93 -155.97 -1.24 4.02 16 19 N -0.53 -7.15 10.32 -11.42 -0.12 -7.27 16 20 C 0.42 4.48 7.34 -155.80 -1.14 3.33 16 21 C -0.14 -0.88 9.95 -39.31 -0.39 -1.27 16 22 C -0.04 -0.14 10.07 -39.56 -0.40 -0.53 16 23 C -0.18 -0.76 9.99 -39.94 -0.40 -1.16 16 24 C 0.11 0.81 10.07 -16.62 -0.17 0.64 16 25 N -0.45 -5.08 2.78 -64.79 -0.18 -5.26 16 26 C 0.56 8.39 7.41 -14.84 -0.11 8.28 16 27 O -0.51 -8.47 16.68 5.05 0.08 -8.38 16 28 N -0.41 -6.70 3.22 -119.53 -0.38 -7.08 16 29 C 0.07 0.94 10.55 59.85 0.63 1.57 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.16 2.73 8.06 -52.49 -0.42 2.31 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.06 8.06 -52.49 -0.42 -0.37 16 37 H 0.16 0.16 8.06 -52.49 -0.42 -0.27 16 38 H 0.18 1.16 7.32 -52.49 -0.38 0.78 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.12 1.84 6.08 -51.93 -0.32 1.53 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -33.93 356.47 -9.23 -43.16 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.31 Total: 0.03 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -4.70 Total: 8.63 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.05 Total: -43.84 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.52 Total: -29.01 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.93 -9.23 -43.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784510665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.693 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds