Wall clock time and date at job start Tue Mar 31 2020 23:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47318 * 2 1 4 4 C 1.50704 * 109.46826 * 239.99773 * 2 1 3 5 5 H 1.08003 * 119.99466 * 239.99784 * 4 2 1 6 6 C 1.37871 * 120.00037 * 60.00470 * 4 2 1 7 7 N 1.31517 * 120.00054 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46779 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47359 * 119.99788 * 8 6 4 11 11 H 1.48506 * 109.46804 * 239.99983 * 8 6 4 12 12 O 1.42897 * 109.46915 * 119.99673 * 2 1 3 13 13 C 1.34935 * 117.00441 * 269.99898 * 12 2 1 14 14 O 1.21664 * 119.99980 * 0.02562 * 13 12 2 15 15 C 1.46293 * 120.00371 * 180.02562 * 13 12 2 16 16 C 1.36435 * 125.55400 * 179.97438 * 15 13 12 17 17 C 1.40620 * 107.59963 * 180.02562 * 16 15 13 18 18 C 1.41197 * 107.31303 * 359.97438 * 17 16 15 19 19 N 1.33012 * 119.35090 * 180.02562 * 18 17 16 20 20 C 1.33035 * 121.50641 * 359.93463 * 19 18 17 21 21 C 1.40918 * 119.03080 * 180.02562 * 20 19 18 22 22 C 1.36158 * 119.54698 * 180.02562 * 21 20 19 23 23 C 1.40298 * 119.62498 * 0.02562 * 22 21 20 24 24 C 1.35072 * 120.13839 * 0.02562 * 23 22 21 25 25 N 1.36462 * 120.77841 * 359.97438 * 24 23 22 26 26 C 1.35190 * 119.26746 * 180.02562 * 25 24 23 27 27 O 1.21856 * 120.72077 * 0.02562 * 26 25 24 28 28 N 1.36635 * 107.38818 * 0.02562 * 18 17 16 29 29 C 1.46498 * 125.59721 * 179.73629 * 28 18 17 30 30 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46956 * 300.00530 * 1 2 3 32 32 H 1.08999 * 109.46909 * 59.99947 * 1 2 3 33 33 H 0.97000 * 120.00120 * 180.02562 * 7 6 4 34 34 H 1.08000 * 126.20026 * 0.02994 * 16 15 13 35 35 H 1.08002 * 120.22745 * 0.05817 * 21 20 19 36 36 H 1.07998 * 120.18346 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.93050 * 180.02562 * 23 22 21 38 38 H 1.08009 * 119.61164 * 179.97438 * 24 23 22 39 39 H 1.09007 * 109.47161 * 90.00119 * 29 28 18 40 40 H 1.09000 * 109.46745 * 209.99459 * 29 28 18 41 41 H 1.08991 * 109.47083 * 330.00073 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1462 -2.2872 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1876 -4.8165 12 8 2.0063 -0.6736 1.1668 13 6 2.2105 0.0788 2.2681 14 8 1.9893 1.2748 2.2374 15 6 2.6980 -0.5434 3.4991 16 6 2.9432 0.1066 4.6734 17 6 3.3970 -0.8479 5.6010 18 6 3.4158 -2.0972 4.9433 19 7 3.8110 -3.1787 5.6091 20 6 4.1911 -3.1110 6.8823 21 6 4.6006 -4.2896 7.5372 22 6 4.9912 -4.2325 8.8404 23 6 4.9805 -3.0020 9.5143 24 6 4.5842 -1.8811 8.8732 25 7 4.1906 -1.9256 7.5674 26 6 3.8004 -0.7850 6.9554 27 8 3.7981 0.2748 7.5569 28 7 2.9865 -1.8909 3.6626 29 6 2.8575 -2.9220 2.6300 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.7082 1.1608 -3.4844 34 1 2.8125 1.1628 4.8572 35 1 4.6052 -5.2316 7.0091 36 1 5.3074 -5.1293 9.3522 37 1 5.2896 -2.9510 10.5479 38 1 4.5789 -0.9384 9.4004 39 1 1.8573 -3.3534 2.6701 40 1 3.0217 -2.4762 1.6490 41 1 3.5974 -3.7035 2.8025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784510668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:09 Heat of formation + Delta-G solvation = -0.498479 kcal Electronic energy + Delta-G solvation = -28796.161010 eV Core-core repulsion = 24643.393955 eV Total energy + Delta-G solvation = -4152.767055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.95563 -41.00176 -39.30103 -38.52641 -36.37013 -35.91913 -34.19420 -33.35707 -32.87305 -30.99379 -29.76559 -28.89536 -26.96226 -25.83166 -25.35399 -24.11898 -23.47575 -22.71597 -20.74362 -19.75003 -19.43712 -18.87862 -17.73613 -17.09083 -16.93486 -16.75314 -16.32065 -15.74094 -15.63991 -15.56920 -15.10050 -14.66941 -14.63850 -14.42708 -14.05376 -13.72227 -13.46702 -13.06657 -12.84874 -12.73475 -12.46940 -12.36384 -12.22405 -11.88402 -11.48440 -11.22278 -11.12676 -10.99402 -10.88886 -10.69604 -10.41522 -10.34652 -10.15380 -10.00237 -9.61930 -9.30346 -9.03384 -8.94196 -8.54238 -7.44796 -6.23075 -4.30907 -0.14867 0.44055 1.38134 1.84206 1.98162 2.26801 2.50384 3.20142 3.26068 3.30186 3.46080 3.48064 3.61058 3.73220 4.00365 4.16570 4.28787 4.34322 4.51917 4.62297 4.75347 5.09399 5.10556 5.14790 5.31696 5.37892 5.44797 5.55287 5.63706 5.64636 5.73191 6.01092 6.02301 6.23088 6.26514 6.56367 6.68881 6.83622 6.85693 6.87106 7.05170 7.43008 7.52285 7.57103 7.66585 7.84786 8.06684 8.51545 8.79957 9.34943 10.84325 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023974 B = 0.002532 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.652291 B =11054.064965 C =11915.235949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.886 5.886 8 Si 0.911 3.089 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.346 6.346 13 C 0.525 3.475 14 O -0.498 6.498 15 C 0.004 3.996 16 C -0.027 4.027 17 C -0.304 4.304 18 C 0.335 3.665 19 N -0.534 5.534 20 C 0.415 3.585 21 C -0.137 4.137 22 C -0.036 4.036 23 C -0.184 4.184 24 C 0.109 3.891 25 N -0.451 5.451 26 C 0.563 3.437 27 O -0.512 6.512 28 N -0.408 5.408 29 C 0.067 3.933 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.100 0.900 33 H 0.266 0.734 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.179 0.821 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -12.730 23.473 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.158 3.842 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.263 6.263 13 C 0.368 3.632 14 O -0.387 6.387 15 C -0.102 4.102 16 C -0.052 4.052 17 C -0.315 4.315 18 C 0.101 3.899 19 N -0.262 5.262 20 C 0.165 3.835 21 C -0.158 4.158 22 C -0.060 4.060 23 C -0.206 4.206 24 C -0.013 4.013 25 N -0.159 5.159 26 C 0.365 3.635 27 O -0.388 6.388 28 N -0.088 5.088 29 C -0.073 4.073 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.196 0.804 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.577 -12.308 22.516 26.756 hybrid contribution 0.120 0.344 -0.613 0.713 sum 7.697 -11.964 21.903 26.118 Atomic orbital electron populations 1.22195 0.97540 1.00109 1.01556 1.20333 0.91548 0.94390 0.77897 0.93468 1.21013 1.32644 1.13485 0.88759 0.91325 1.24892 0.94880 0.95073 0.99102 1.69907 1.35843 1.22474 1.24152 0.86226 0.78624 0.79471 0.81844 1.19502 1.20700 1.20730 1.86160 1.76051 1.43021 1.21033 1.19539 0.75316 0.85108 0.83200 1.90886 1.48762 1.15101 1.83984 1.19455 1.13610 0.81759 0.95416 1.20513 0.96651 0.99480 0.88560 1.19110 1.21868 0.95915 0.94645 1.18140 0.96129 0.89664 0.85921 1.67597 1.25940 1.28166 1.04455 1.19999 0.91718 0.84957 0.86874 1.20872 1.03625 0.96230 0.95031 1.21448 0.92594 0.98546 0.93444 1.20903 1.06188 0.91401 1.02114 1.22267 0.93738 1.02120 0.83152 1.44039 1.49691 1.10361 1.11788 1.16383 0.78204 0.82126 0.86800 1.90905 1.53980 1.26895 1.67044 1.44074 1.49147 1.07825 1.07799 1.22463 1.03667 0.89924 0.91237 0.94464 0.96435 0.88208 0.92377 0.81775 0.81893 0.83295 0.82697 0.80433 0.90061 0.86597 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.31 37.16 0.35 -3.56 16 2 C 0.21 5.53 2.51 -27.88 -0.07 5.46 16 3 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 4 C -0.52 -14.14 8.89 -34.44 -0.31 -14.44 16 5 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.35 -7.94 7.08 -41.14 -0.29 -8.23 16 13 C 0.52 11.43 7.86 33.97 0.27 11.70 16 14 O -0.50 -12.07 16.08 -19.39 -0.31 -12.39 16 15 C 0.00 0.07 6.82 -82.13 -0.56 -0.49 16 16 C -0.03 -0.47 10.52 -39.33 -0.41 -0.89 16 17 C -0.30 -4.98 6.13 -106.65 -0.65 -5.63 16 18 C 0.34 5.26 7.92 -155.96 -1.24 4.02 16 19 N -0.53 -7.15 10.32 -11.42 -0.12 -7.27 16 20 C 0.41 4.48 7.34 -155.79 -1.14 3.33 16 21 C -0.14 -0.88 9.95 -39.32 -0.39 -1.27 16 22 C -0.04 -0.13 10.07 -39.56 -0.40 -0.53 16 23 C -0.18 -0.76 9.99 -39.93 -0.40 -1.16 16 24 C 0.11 0.81 10.07 -16.62 -0.17 0.64 16 25 N -0.45 -5.07 2.78 -64.79 -0.18 -5.25 16 26 C 0.56 8.39 7.41 -14.84 -0.11 8.28 16 27 O -0.51 -8.47 16.68 5.05 0.08 -8.38 16 28 N -0.41 -6.70 3.22 -119.53 -0.38 -7.08 16 29 C 0.07 0.94 10.55 59.85 0.63 1.57 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 2.67 6.07 -51.93 -0.32 2.36 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.16 2.73 8.06 -52.49 -0.42 2.31 16 35 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.06 8.06 -52.49 -0.42 -0.37 16 37 H 0.16 0.16 8.06 -52.49 -0.42 -0.27 16 38 H 0.18 1.16 7.32 -52.48 -0.38 0.78 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.12 1.84 6.08 -51.93 -0.32 1.53 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -33.95 356.48 -9.23 -43.18 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -4.31 Total: 0.00 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -4.70 Total: 8.63 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.05 Total: -43.83 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.52 Total: -29.00 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.95 -9.23 -43.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784510668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.684 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds