Wall clock time and date at job start Tue Mar 31 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99918 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99715 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99702 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47045 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99671 * 359.97438 * 10 9 8 12 12 C 1.37870 * 120.00183 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99837 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00146 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47113 * 60.00099 * 14 12 10 16 16 H 1.48507 * 109.46927 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47045 * 299.99771 * 14 12 10 18 18 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 19 19 C 1.38257 * 119.99965 * 79.72689 * 18 2 1 20 20 C 1.38210 * 119.99954 * 179.76915 * 19 18 2 21 21 C 1.38251 * 119.99955 * 0.48043 * 20 19 18 22 22 C 1.38214 * 120.00151 * 359.79800 * 21 20 19 23 23 S 1.76200 * 120.00143 * 179.97438 * 22 21 20 24 24 N 1.65601 * 107.21680 * 269.97374 * 23 22 21 25 25 O 1.42096 * 106.40351 * 23.51558 * 23 22 21 26 26 O 1.42104 * 106.40168 * 156.43675 * 23 22 21 27 27 C 1.38208 * 119.99789 * 260.00392 * 18 2 1 28 28 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 30 30 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 31 31 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 32 32 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 33 33 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 34 34 H 0.96993 * 119.99587 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47247 * 300.00372 * 9 8 6 36 36 H 1.08995 * 109.47162 * 60.00294 * 9 8 6 37 37 H 0.97003 * 119.99678 * 180.02562 * 13 12 10 38 38 H 1.07998 * 119.99901 * 0.02562 * 19 18 2 39 39 H 1.07997 * 120.00012 * 180.25797 * 20 19 18 40 40 H 1.08001 * 120.00182 * 179.77018 * 21 20 19 41 41 H 0.97003 * 119.99629 * 150.00166 * 24 23 22 42 42 H 0.96994 * 119.99915 * 330.00213 * 24 23 22 43 43 H 1.07999 * 120.00382 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 8 2.8687 -1.6982 -3.4700 8 7 2.7285 0.1208 -4.7325 9 6 3.2199 -0.6026 -5.9077 10 6 3.2844 0.3362 -7.0848 11 1 2.9885 1.3684 -6.9691 12 6 3.7202 -0.1228 -8.3097 13 7 4.0800 -1.3799 -8.4507 14 14 3.7994 1.0408 -9.7689 15 1 4.7210 2.1628 -9.4578 16 1 4.2977 0.3074 -10.9603 17 1 2.4432 1.5770 -10.0486 18 6 2.0324 -0.7105 1.2304 19 6 2.0615 -2.0922 1.2674 20 6 2.5268 -2.7437 2.3940 21 6 2.9537 -2.0138 3.4878 22 6 2.9192 -0.6326 3.4531 23 16 3.4627 0.2976 4.8473 24 7 2.1451 0.5351 5.8219 25 8 4.3501 -0.5443 5.5703 26 8 3.8338 1.5781 4.3554 27 6 2.4586 0.0193 2.3240 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.4496 -1.4979 -1.4101 32 1 1.0870 0.6163 -2.5525 33 1 2.7588 1.0464 -2.1182 34 1 2.5040 1.0619 -4.8010 35 1 4.2155 -0.9961 -5.7022 36 1 2.5438 -1.4264 -6.1362 37 1 4.3870 -1.7028 -9.3124 38 1 1.7246 -2.6624 0.4143 39 1 2.5535 -3.8230 2.4213 40 1 3.3138 -2.5230 4.3696 41 1 2.2603 0.6178 6.7816 42 1 1.2582 0.5915 5.4332 43 1 2.4321 1.0986 2.2967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795117269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:41 Heat of formation + Delta-G solvation = -89.891877 kcal Electronic energy + Delta-G solvation = -26290.750695 eV Core-core repulsion = 22269.551203 eV Total energy + Delta-G solvation = -4021.199492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01940 -38.86551 -37.49184 -36.62557 -36.15516 -34.18780 -33.62586 -32.41779 -32.08049 -31.60089 -29.52405 -27.74821 -25.72202 -24.16224 -23.32494 -22.28178 -21.38810 -19.81208 -19.70808 -18.44201 -17.75400 -17.35226 -16.99194 -16.44582 -16.01261 -15.83369 -15.67205 -15.24779 -15.04027 -14.85169 -14.32599 -14.29251 -13.94182 -13.85694 -13.48706 -12.82474 -12.72850 -12.63372 -12.59491 -12.50098 -12.40912 -12.31393 -12.20287 -11.97226 -11.84912 -11.50995 -11.24371 -11.13894 -11.01637 -10.88033 -10.81328 -10.33867 -9.67746 -9.43519 -9.21873 -9.11430 -8.75271 -8.50829 -7.90352 -6.18359 -4.25632 0.03150 0.50352 0.94858 2.74842 3.10615 3.23820 3.28708 3.30083 3.33419 3.40194 3.69105 4.07720 4.28677 4.39424 4.47335 4.52183 4.69819 4.73545 4.88710 4.94419 5.09561 5.17508 5.22183 5.25797 5.35313 5.48325 5.50537 5.53001 5.56167 5.60363 5.68314 5.79184 5.98984 6.10251 6.49673 6.57468 6.77613 7.21664 7.29409 7.40974 7.49613 7.64443 7.95129 8.59804 8.75842 9.07514 9.41050 10.91727 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023596 B = 0.001795 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.352268 B =15597.642407 C =15795.057088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.119 3.881 3 H 0.093 0.907 4 N -0.665 5.665 5 C 0.039 3.961 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.251 3.749 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.083 4.083 19 C -0.034 4.034 20 C -0.140 4.140 21 C -0.022 4.022 22 C -0.677 4.677 23 S 2.702 3.298 24 N -1.250 6.250 25 O -0.965 6.965 26 O -0.961 6.961 27 C -0.020 4.020 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.352 0.648 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.390 0.610 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 3.453 28.787 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.111 0.889 4 N -0.297 5.297 5 C -0.093 4.093 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.363 5.363 9 C 0.130 3.870 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.732 3.268 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.085 4.085 19 C -0.053 4.053 20 C -0.158 4.158 21 C -0.042 4.042 22 C -0.765 4.765 23 S 2.791 3.209 24 N -0.923 5.923 25 O -0.954 6.954 26 O -0.950 6.950 27 C -0.039 4.039 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.222 0.778 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.318 2.803 28.860 30.166 hybrid contribution -1.755 0.729 -1.431 2.378 sum -10.073 3.532 27.430 29.433 Atomic orbital electron populations 1.22532 0.95862 1.02794 1.02776 1.20509 0.92875 0.97697 0.88048 0.88890 1.60193 1.57964 1.09174 1.02363 1.21892 1.00939 0.96117 0.90343 1.20314 0.79457 0.87895 0.84294 1.90664 1.50766 1.16102 1.84702 1.46449 1.65402 1.13894 1.10541 1.19086 0.95010 0.92421 0.80437 1.21187 1.46286 0.96479 0.94351 0.91952 1.24961 0.94794 0.95356 0.98946 1.69968 1.42791 1.14344 1.25140 0.86462 0.78489 0.80535 0.81332 1.20043 1.21061 1.20094 1.19897 0.99668 0.94041 0.94874 1.21384 0.92750 0.94173 0.96974 1.21330 1.00317 1.00625 0.93564 1.20906 0.92691 0.91668 0.98923 1.30500 1.20498 1.07107 1.18441 1.01503 0.72445 0.73911 0.73022 1.53156 1.25022 1.93058 1.21068 1.93596 1.61808 1.68464 1.71555 1.93622 1.80491 1.40161 1.80739 1.20778 0.91934 1.00115 0.91118 0.91983 0.91657 0.91752 0.82770 0.92531 0.88360 0.77761 0.95526 0.95619 0.92372 0.84835 0.84848 0.84279 0.75004 0.75635 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.14 37.16 0.34 -0.96 16 2 C 0.12 1.09 2.79 -68.86 -0.19 0.90 16 3 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 4 N -0.66 -8.19 5.33 -109.21 -0.58 -8.78 16 5 C 0.04 0.51 5.97 -4.97 -0.03 0.48 16 6 C 0.50 9.49 7.87 -10.98 -0.09 9.40 16 7 O -0.54 -12.74 16.20 5.56 0.09 -12.65 16 8 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16 9 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 10 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 11 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 14 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 C -0.08 -0.80 4.95 -104.62 -0.52 -1.32 16 19 C -0.03 -0.33 9.32 -39.58 -0.37 -0.70 16 20 C -0.14 -1.19 10.05 -39.59 -0.40 -1.59 16 21 C -0.02 -0.19 9.52 -39.59 -0.38 -0.57 16 22 C -0.68 -5.81 5.97 -39.58 -0.24 -6.05 16 23 S 2.70 21.77 6.28 -107.50 -0.68 21.10 16 24 N -1.25 -4.59 9.52 60.35 0.57 -4.01 16 25 O -0.96 -10.69 17.28 -57.17 -0.99 -11.68 16 26 O -0.96 -11.03 17.28 -57.17 -0.99 -12.02 16 27 C -0.02 -0.18 9.15 -39.58 -0.36 -0.54 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 31 H 0.35 4.38 7.52 -39.29 -0.30 4.09 16 32 H 0.06 0.60 7.43 -51.93 -0.39 0.22 16 33 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.21 7.26 -52.49 -0.38 0.83 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.96 7.62 -52.49 -0.40 0.56 16 41 H 0.42 0.88 8.96 -34.47 -0.31 0.57 16 42 H 0.42 0.60 8.96 -34.47 -0.31 0.29 16 43 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -38.26 379.86 -9.81 -48.07 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.67 Total: 6.42 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.67 Total: -7.69 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.39 Total: -52.99 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.89 Total: -36.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 21.77 SS G_CDS: -0.68 Total: 21.10 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.26 -9.81 -48.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795117269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.820 kcal (2) G-P(sol) polarization free energy of solvation -38.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds