Wall clock time and date at job start Tue Mar 31 2020 22:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46699 * 2 1 4 4 N 1.46889 * 109.47174 * 120.00681 * 2 1 3 5 5 C 1.46899 * 111.00018 * 275.00074 * 4 2 1 6 6 C 1.50703 * 109.47506 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00127 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99733 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46848 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00480 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00076 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99806 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00234 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46780 * 60.00458 * 14 12 10 16 16 H 1.48497 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47315 * 300.00693 * 14 12 10 18 18 C 1.50702 * 109.46861 * 240.00600 * 2 1 3 19 19 C 1.38255 * 120.00225 * 279.99760 * 18 2 1 20 20 C 1.38208 * 120.00357 * 179.70539 * 19 18 2 21 21 C 1.38262 * 119.99554 * 359.97438 * 20 19 18 22 22 C 1.38205 * 120.00475 * 0.02562 * 21 20 19 23 23 S 1.76203 * 120.00184 * 179.97438 * 22 21 20 24 24 N 1.65604 * 107.21322 * 90.00111 * 23 22 21 25 25 O 1.42101 * 106.40287 * 203.54039 * 23 22 21 26 26 O 1.42095 * 106.40421 * 336.46181 * 23 22 21 27 27 C 1.38220 * 120.00039 * 99.72711 * 18 2 1 28 28 H 1.08994 * 109.47105 * 299.99520 * 1 2 3 29 29 H 1.09002 * 109.47085 * 59.99288 * 1 2 3 30 30 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.00901 * 111.00522 * 38.95065 * 4 2 1 32 32 H 1.09006 * 109.47162 * 300.00113 * 5 4 2 33 33 H 1.09001 * 109.47809 * 59.99900 * 5 4 2 34 34 H 0.97000 * 120.00244 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.47154 * 299.99746 * 9 8 6 36 36 H 1.08999 * 109.47208 * 60.00171 * 9 8 6 37 37 H 0.96995 * 120.00026 * 179.97438 * 13 12 10 38 38 H 1.08000 * 119.99329 * 359.72712 * 19 18 2 39 39 H 1.07992 * 120.00457 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99741 * 180.02562 * 21 20 19 41 41 H 0.97006 * 119.99637 * 150.00207 * 24 23 22 42 42 H 0.96994 * 120.00300 * 329.99969 * 24 23 22 43 43 H 1.08002 * 119.99604 * 0.27433 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0824 0.2224 2.3468 6 6 2.5885 -0.5218 3.5556 7 8 2.8688 -1.6987 3.4697 8 7 2.7286 0.1201 4.7323 9 6 3.2201 -0.6035 5.9075 10 6 3.2845 0.3351 7.0847 11 1 2.9887 1.3674 6.9692 12 6 3.7203 -0.1241 8.3096 13 7 4.0802 -1.3812 8.4504 14 14 3.8010 1.0396 9.7686 15 1 2.4452 1.5770 10.0486 16 1 4.2990 0.3061 10.9599 17 1 4.7232 2.1610 9.4570 18 6 2.0323 -0.7103 -1.2306 19 6 2.0667 -2.0920 -1.2656 20 6 2.5216 -2.7435 -2.3964 21 6 2.9418 -2.0134 -3.4928 22 6 2.9074 -0.6323 -3.4579 23 16 3.4435 0.2981 -4.8550 24 7 2.1208 0.5349 -5.8229 25 8 3.8167 1.5787 -4.3651 26 8 4.3275 -0.5437 -5.5824 27 6 2.4533 0.0195 -2.3263 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.4496 -1.4980 1.4099 32 1 2.7588 1.0460 2.1182 33 1 1.0871 0.6161 2.5526 34 1 2.5041 1.0613 4.8011 35 1 2.5439 -1.4274 6.1359 36 1 4.2156 -0.9968 5.7020 37 1 4.3871 -1.7042 9.3120 38 1 1.7378 -2.6621 -0.4094 39 1 2.5481 -3.8227 -2.4240 40 1 3.2969 -2.5225 -4.3767 41 1 2.0594 1.3308 -6.3740 42 1 1.4076 -0.1223 -5.8389 43 1 2.4265 1.0988 -2.2989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795117272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:44 Heat of formation + Delta-G solvation = -89.887295 kcal Electronic energy + Delta-G solvation = -26288.541432 eV Core-core repulsion = 22267.342139 eV Total energy + Delta-G solvation = -4021.199293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01808 -38.86505 -37.49300 -36.62548 -36.15602 -34.18655 -33.62482 -32.41750 -32.08031 -31.59696 -29.52477 -27.74783 -25.72191 -24.15515 -23.33344 -22.28081 -21.37873 -19.81247 -19.70004 -18.45693 -17.75612 -17.40264 -16.94069 -16.36963 -16.04568 -15.91310 -15.56671 -15.33051 -15.06075 -14.81163 -14.32831 -14.27456 -13.94568 -13.85523 -13.48953 -12.82411 -12.72767 -12.62721 -12.59328 -12.49564 -12.41469 -12.31369 -12.20839 -11.97089 -11.84315 -11.50871 -11.24374 -11.13776 -11.01634 -10.88010 -10.81361 -10.33854 -9.67581 -9.43520 -9.21891 -9.11308 -8.75254 -8.50710 -7.90347 -6.18358 -4.25599 0.03137 0.50390 0.94877 2.74748 3.10808 3.23811 3.28710 3.30091 3.33514 3.39928 3.69570 4.07802 4.28596 4.39455 4.47477 4.52386 4.69355 4.73848 4.89005 4.94682 5.10068 5.17504 5.22570 5.26005 5.35450 5.48552 5.50778 5.53109 5.56327 5.60554 5.68427 5.79353 5.98879 6.10483 6.49685 6.57572 6.77862 7.21816 7.29458 7.40978 7.49650 7.64477 7.95153 8.59862 8.75891 9.07574 9.41043 10.91751 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023661 B = 0.001793 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.118183 B =15608.652933 C =15808.766593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.119 3.881 3 H 0.093 0.907 4 N -0.665 5.665 5 C 0.039 3.961 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.714 5.714 9 C 0.251 3.749 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.084 4.084 19 C -0.034 4.034 20 C -0.139 4.139 21 C -0.028 4.028 22 C -0.677 4.677 23 S 2.702 3.298 24 N -1.250 6.250 25 O -0.963 6.963 26 O -0.963 6.963 27 C -0.014 4.014 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.352 0.648 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 3.496 -28.747 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.111 0.889 4 N -0.297 5.297 5 C -0.093 4.093 6 C 0.280 3.720 7 O -0.422 6.422 8 N -0.363 5.363 9 C 0.131 3.869 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.141 4.141 13 N -0.522 5.522 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.085 4.085 19 C -0.053 4.053 20 C -0.158 4.158 21 C -0.047 4.047 22 C -0.766 4.766 23 S 2.791 3.209 24 N -0.923 5.923 25 O -0.952 6.952 26 O -0.952 6.952 27 C -0.034 4.034 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.250 0.750 42 H 0.243 0.757 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.349 2.852 -28.823 30.143 hybrid contribution -1.756 0.744 1.443 2.392 sum -10.105 3.596 -27.381 29.407 Atomic orbital electron populations 1.22529 0.95857 1.02788 1.02780 1.20505 0.92877 0.97698 0.88039 0.88895 1.60192 1.57953 1.09179 1.02367 1.21892 1.00941 0.96119 0.90343 1.20310 0.79456 0.87896 0.84294 1.90664 1.50775 1.16101 1.84704 1.46450 1.65395 1.13897 1.10541 1.19087 0.95007 0.92417 0.80437 1.21188 1.46294 0.96478 0.94349 0.91952 1.24963 0.94794 0.95356 0.98950 1.69963 1.42783 1.14347 1.25148 0.86460 0.78491 0.80534 0.81326 1.20094 1.21063 1.20042 1.19907 0.99677 0.94047 0.94885 1.21385 0.92707 0.94173 0.97019 1.21326 1.00374 1.00612 0.93503 1.20940 0.92959 0.91710 0.99102 1.30495 1.20510 1.06974 1.18572 1.01501 0.72604 0.73507 0.73267 1.53157 1.41423 1.35257 1.62467 1.93605 1.81054 1.40066 1.80514 1.93612 1.61427 1.69144 1.71019 1.20744 0.91587 1.00129 0.90963 0.91750 0.91660 0.91986 0.82772 0.88363 0.92532 0.77759 0.95619 0.95526 0.92369 0.84820 0.84848 0.84264 0.74981 0.75651 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.14 37.16 0.34 -0.98 16 2 C 0.12 1.10 2.79 -68.87 -0.19 0.91 16 3 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 4 N -0.66 -8.22 5.33 -109.22 -0.58 -8.81 16 5 C 0.04 0.51 5.96 -4.98 -0.03 0.48 16 6 C 0.50 9.50 7.87 -10.99 -0.09 9.41 16 7 O -0.54 -12.74 16.20 5.56 0.09 -12.65 16 8 N -0.71 -14.60 5.55 -61.47 -0.34 -14.94 16 9 C 0.25 6.60 5.43 -5.19 -0.03 6.58 16 10 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 11 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 14 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.08 -0.81 4.96 -104.62 -0.52 -1.33 16 19 C -0.03 -0.33 9.33 -39.59 -0.37 -0.70 16 20 C -0.14 -1.18 10.05 -39.58 -0.40 -1.57 16 21 C -0.03 -0.23 9.52 -39.58 -0.38 -0.61 16 22 C -0.68 -5.81 5.97 -39.59 -0.24 -6.05 16 23 S 2.70 21.75 6.28 -107.50 -0.68 21.08 16 24 N -1.25 -4.57 9.52 60.35 0.57 -4.00 16 25 O -0.96 -10.88 17.28 -57.17 -0.99 -11.87 16 26 O -0.96 -10.83 17.28 -57.17 -0.99 -11.82 16 27 C -0.01 -0.13 9.15 -39.58 -0.36 -0.49 16 28 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.35 4.39 7.52 -39.29 -0.30 4.10 16 32 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 33 H 0.06 0.60 7.44 -51.93 -0.39 0.22 16 34 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.22 7.24 -52.49 -0.38 0.84 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.14 0.91 7.62 -52.49 -0.40 0.51 16 41 H 0.42 0.90 8.96 -34.47 -0.31 0.59 16 42 H 0.42 0.57 8.96 -34.47 -0.31 0.26 16 43 H 0.14 1.09 7.60 -52.49 -0.40 0.69 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -38.25 379.84 -9.81 -48.06 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.67 Total: 6.46 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.67 Total: -7.68 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.39 Total: -53.02 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.89 Total: -36.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 21.75 SS G_CDS: -0.68 Total: 21.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.25 -9.81 -48.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795117272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.827 kcal (2) G-P(sol) polarization free energy of solvation -38.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds