Wall clock time and date at job start Tue Mar 31 2020 23:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35204 * 126.00393 * 2 1 4 4 C 1.34569 * 107.61660 * 179.97438 * 3 2 1 5 5 C 1.40489 * 108.03820 * 0.08304 * 4 3 2 6 6 N 1.30124 * 108.23003 * 359.61300 * 5 4 3 7 7 C 1.50954 * 123.48374 * 179.80500 * 5 4 3 8 8 C 1.53374 * 108.20447 * 343.40721 * 7 5 4 9 9 C 1.53022 * 109.74872 * 50.64959 * 8 7 5 10 10 C 1.50885 * 128.32650 * 180.27076 * 4 3 2 11 11 H 1.08999 * 109.71455 * 282.94660 * 10 4 3 12 12 C 1.50699 * 109.71652 * 43.59324 * 10 4 3 13 13 O 1.21281 * 120.00020 * 120.00243 * 12 10 4 14 14 N 1.34774 * 120.00244 * 300.00472 * 12 10 4 15 15 S 1.65606 * 119.99827 * 180.02562 * 14 12 10 16 16 O 1.42109 * 104.27395 * 181.07140 * 15 14 12 17 17 O 1.42095 * 104.27631 * 308.92212 * 15 14 12 18 18 C 1.81398 * 104.45054 * 64.99814 * 15 14 12 19 19 C 1.53005 * 109.46857 * 179.97438 * 18 15 14 20 20 C 1.50694 * 109.46906 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00336 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99938 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00069 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47162 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47209 * 120.00052 * 24 22 20 27 27 H 1.48503 * 109.47169 * 239.99748 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99390 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99447 * 1 2 3 30 30 H 1.09004 * 109.47041 * 209.99574 * 1 2 3 31 31 H 1.08000 * 126.18997 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.71758 * 103.08232 * 7 5 4 33 33 H 1.08996 * 109.71710 * 223.68509 * 7 5 4 34 34 H 1.08997 * 109.42104 * 170.73395 * 8 7 5 35 35 H 1.08997 * 109.42505 * 290.61373 * 8 7 5 36 36 H 1.09000 * 109.43445 * 48.34450 * 9 8 7 37 37 H 1.09002 * 109.42605 * 168.24876 * 9 8 7 38 38 H 0.96994 * 119.99971 * 0.02562 * 14 12 10 39 39 H 1.08997 * 109.47022 * 299.99638 * 18 15 14 40 40 H 1.08994 * 109.47200 * 60.00302 * 18 15 14 41 41 H 1.09000 * 109.47044 * 300.00269 * 19 18 15 42 42 H 1.09007 * 109.46738 * 60.00045 * 19 18 15 43 43 H 0.96997 * 120.00391 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 0.0059 7 6 4.7821 -1.5760 -0.0052 8 6 5.9565 -0.6825 -0.4233 9 6 5.9636 0.5919 0.4237 10 6 4.7981 1.4974 0.0064 11 1 4.9811 1.8955 -0.9916 12 6 4.6574 2.6311 0.9891 13 8 5.4277 2.7249 1.9212 14 7 3.6755 3.5409 0.8324 15 16 3.5213 4.7872 1.9120 16 8 2.3887 5.5115 1.4517 17 8 3.5173 4.1514 3.1828 18 6 5.0338 5.7647 1.6940 19 6 5.0101 6.9606 2.6481 20 6 6.2668 7.7723 2.4674 21 1 7.0081 7.4661 1.7441 22 6 6.4703 8.9058 3.2255 23 7 5.5674 9.2789 4.1059 24 14 8.0278 9.9124 3.0010 25 1 8.8762 9.2853 1.9560 26 1 7.6697 11.2926 2.5862 27 1 8.7760 9.9593 4.2830 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8901 0.5138 31 1 1.9295 2.1220 0.0004 32 1 4.9609 -1.9749 0.9934 33 1 4.6726 -2.3963 -0.7145 34 1 6.8924 -1.2213 -0.2755 35 1 5.8534 -0.4170 -1.4754 36 1 5.8591 0.3284 1.4762 37 1 6.9046 1.1213 0.2742 38 1 3.0591 3.4658 0.0872 39 1 5.9025 5.1432 1.9112 40 1 5.0905 6.1218 0.6658 41 1 4.1413 7.5818 2.4304 42 1 4.9531 6.6037 3.6765 43 1 5.7107 10.0762 4.6395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798846676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:23 Heat of formation + Delta-G solvation = -43.744580 kcal Electronic energy + Delta-G solvation = -27999.648405 eV Core-core repulsion = 23980.450010 eV Total energy + Delta-G solvation = -4019.198395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97625 -40.03221 -36.89588 -36.63768 -35.64302 -34.62679 -33.90728 -33.03073 -32.06735 -31.19136 -29.02771 -27.51656 -25.64829 -24.60844 -22.45938 -21.93486 -21.57129 -21.03725 -19.29027 -19.13548 -17.85066 -17.56442 -17.02500 -16.47736 -16.01133 -15.71526 -15.36024 -15.24714 -15.13265 -14.64731 -14.56548 -14.31096 -13.84597 -13.46532 -13.25192 -13.22495 -13.06784 -12.73533 -12.55693 -12.41643 -12.08310 -11.81999 -11.74875 -11.63918 -11.48608 -11.30221 -11.13803 -11.09263 -11.00739 -10.86608 -10.73726 -10.41074 -10.35964 -10.15255 -9.71800 -9.54973 -9.18110 -8.64597 -8.50775 -6.12808 -4.18215 0.47574 1.54076 1.99459 2.21604 2.43668 2.73522 3.26170 3.33361 3.37098 3.89635 4.02313 4.20379 4.32972 4.37420 4.43295 4.60879 4.63611 4.66632 4.81025 4.83490 4.94754 5.06695 5.08552 5.15237 5.20903 5.22676 5.33476 5.49309 5.57745 5.63303 5.71098 5.77416 5.82500 5.86523 6.14363 6.32430 6.44348 6.58884 6.64536 7.27308 7.33823 7.39863 7.47206 7.80561 8.15972 8.85060 9.46473 10.98377 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.002932 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.520292 B = 9548.692808 C =10672.218504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.378 5.378 3 C 0.064 3.936 4 C -0.236 4.236 5 C 0.092 3.908 6 N -0.287 5.287 7 C -0.040 4.040 8 C -0.114 4.114 9 C -0.106 4.106 10 C -0.025 4.025 11 H 0.114 0.886 12 C 0.542 3.458 13 O -0.482 6.482 14 N -1.061 6.061 15 S 2.561 3.439 16 O -0.957 6.957 17 O -0.937 6.937 18 C -0.574 4.574 19 C 0.029 3.971 20 C -0.518 4.518 21 H 0.063 0.937 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.901 3.099 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.171 0.829 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.423 0.577 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 -20.977 -13.883 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.160 5.160 3 C -0.082 4.082 4 C -0.248 4.248 5 C -0.076 4.076 6 N -0.108 5.108 7 C -0.079 4.079 8 C -0.152 4.152 9 C -0.144 4.144 10 C -0.049 4.049 11 H 0.131 0.869 12 C 0.328 3.672 13 O -0.352 6.352 14 N -0.824 5.824 15 S 2.662 3.338 16 O -0.947 6.947 17 O -0.927 6.927 18 C -0.709 4.709 19 C -0.010 4.010 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.188 0.812 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.259 0.741 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.866 -21.714 -12.467 25.963 hybrid contribution 1.136 1.563 -0.783 2.085 sum -5.729 -20.151 -13.249 24.788 Atomic orbital electron populations 1.21917 0.73765 1.04866 1.03512 1.48497 1.06635 1.03219 1.57612 1.22067 0.90802 0.93503 1.01808 1.19555 0.93049 0.93956 1.18233 1.22311 0.93502 0.93184 0.98651 1.77061 1.01093 1.07903 1.24738 1.20191 0.88228 0.96405 1.03121 1.21572 0.97717 0.95651 1.00216 1.21501 0.96608 0.94892 1.01376 1.19840 0.93759 0.92342 0.98947 0.86858 1.20568 0.78534 0.82317 0.85773 1.90905 1.40695 1.73580 1.30008 1.55587 1.39531 1.42254 1.44996 1.06819 0.78531 0.74398 0.74069 1.93585 1.48324 1.71700 1.81108 1.93602 1.87267 1.73154 1.38655 1.30330 1.17083 1.12763 1.10739 1.19000 0.99973 0.89131 0.92916 1.21016 1.03726 1.08954 1.22095 0.91858 1.25071 0.97040 0.97459 0.94934 1.69962 1.34410 1.25106 1.23381 0.86388 0.82749 0.79840 0.78167 1.19583 1.20810 1.20756 0.90537 0.89177 0.89126 0.81209 0.89512 0.89817 0.90280 0.91238 0.90119 0.90112 0.74133 0.84953 0.85984 0.94790 0.94588 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.30 16 2 N -0.38 -3.85 4.02 -68.29 -0.27 -4.13 16 3 C 0.06 0.64 10.49 -17.36 -0.18 0.45 16 4 C -0.24 -2.50 5.41 -104.98 -0.57 -3.06 16 5 C 0.09 0.99 7.10 -82.34 -0.58 0.41 16 6 N -0.29 -3.42 12.56 33.75 0.42 -3.00 16 7 C -0.04 -0.32 6.31 -27.57 -0.17 -0.49 16 8 C -0.11 -0.76 5.86 -26.53 -0.16 -0.91 16 9 C -0.11 -0.96 4.61 -26.52 -0.12 -1.09 16 10 C -0.02 -0.24 2.90 -92.64 -0.27 -0.51 16 11 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 12 C 0.54 7.27 6.82 -10.99 -0.07 7.19 16 13 O -0.48 -8.32 13.96 -11.58 -0.16 -8.48 16 14 N -1.06 -13.45 5.01 31.22 0.16 -13.29 16 15 S 2.56 46.18 5.11 -107.50 -0.55 45.63 16 16 O -0.96 -18.48 18.08 -57.54 -1.04 -19.52 16 17 O -0.94 -20.59 17.04 -64.79 -1.10 -21.70 16 18 C -0.57 -11.31 5.82 37.16 0.22 -11.09 16 19 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 20 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 21 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 24 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.17 1.27 5.93 -52.49 -0.31 0.96 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.08 0.88 7.77 -51.93 -0.40 0.48 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.42 3.64 6.46 -34.48 -0.22 3.41 16 39 H 0.13 2.55 7.19 -51.93 -0.37 2.18 16 40 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -39.13 367.34 -9.00 -48.13 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.92 Total: 0.76 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.78 Total: -20.41 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.04 Total: -46.23 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -2.31 Total: -49.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 46.18 SS G_CDS: -0.55 Total: 45.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.13 -9.00 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798846676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.382 kcal (2) G-P(sol) polarization free energy of solvation -39.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds