Wall clock time and date at job start Tue Mar 31 2020 23:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35202 * 126.00148 * 2 1 4 4 C 1.34567 * 107.61448 * 180.02562 * 3 2 1 5 5 C 1.40485 * 108.04035 * 359.90999 * 4 3 2 6 6 N 1.30129 * 108.22986 * 0.11528 * 5 4 3 7 7 C 1.50950 * 123.48460 * 180.16308 * 5 4 3 8 8 C 1.53374 * 108.20354 * 16.69677 * 7 5 4 9 9 C 1.53021 * 109.75840 * 309.33582 * 8 7 5 10 10 C 1.50886 * 128.32598 * 179.87592 * 4 3 2 11 11 H 1.08997 * 109.75586 * 76.96175 * 10 4 3 12 12 C 1.50701 * 109.71582 * 316.33396 * 10 4 3 13 13 O 1.21282 * 120.00416 * 241.25921 * 12 10 4 14 14 N 1.34775 * 120.00008 * 61.26598 * 12 10 4 15 15 S 1.65597 * 120.00203 * 179.97438 * 14 12 10 16 16 O 1.42093 * 104.27757 * 308.92885 * 15 14 12 17 17 O 1.42105 * 104.27889 * 181.06926 * 15 14 12 18 18 C 1.81401 * 104.44946 * 65.00041 * 15 14 12 19 19 C 1.53001 * 109.47441 * 180.02562 * 18 15 14 20 20 C 1.50697 * 109.46995 * 180.02562 * 19 18 15 21 21 H 1.07991 * 120.00449 * 359.72153 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 120.00108 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99667 * 24 22 20 28 28 H 1.09004 * 109.47045 * 269.97678 * 1 2 3 29 29 H 1.08999 * 109.46774 * 29.97457 * 1 2 3 30 30 H 1.08997 * 109.47133 * 149.97713 * 1 2 3 31 31 H 1.07997 * 126.19397 * 0.07430 * 3 2 1 32 32 H 1.08996 * 109.71752 * 257.02211 * 7 5 4 33 33 H 1.08996 * 109.71673 * 136.37594 * 7 5 4 34 34 H 1.09005 * 109.42245 * 189.24725 * 8 7 5 35 35 H 1.08996 * 109.37854 * 69.40089 * 8 7 5 36 36 H 1.09007 * 109.42812 * 311.63072 * 9 8 7 37 37 H 1.08996 * 109.42974 * 191.78209 * 9 8 7 38 38 H 0.97003 * 119.99600 * 359.97438 * 14 12 10 39 39 H 1.08998 * 109.47401 * 59.99842 * 18 15 14 40 40 H 1.09006 * 109.47274 * 300.00142 * 18 15 14 41 41 H 1.08998 * 109.47065 * 59.99498 * 19 18 15 42 42 H 1.09001 * 109.46892 * 299.99762 * 19 18 15 43 43 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 -0.0006 5 6 3.5283 -0.7355 0.0012 6 7 2.2898 -1.1351 0.0002 7 6 4.7822 -1.5759 0.0047 8 6 5.9563 -0.6829 0.4245 9 6 5.9642 0.5926 -0.4208 10 6 4.7981 1.4974 -0.0034 11 1 4.9801 1.8949 0.9951 12 6 4.6588 2.6326 -0.9848 13 8 5.4162 2.7148 -1.9285 14 7 3.6926 3.5565 -0.8138 15 16 3.5399 4.8042 -1.8918 16 8 4.8481 5.3515 -1.9820 17 8 2.4572 5.5734 -1.3866 18 6 3.0770 4.0011 -3.4511 19 6 2.9050 5.0621 -4.5399 20 6 2.5198 4.3948 -5.8351 21 1 2.4132 3.3211 -5.8786 22 6 2.3086 5.1549 -6.9660 23 7 2.4379 6.4626 -6.9129 24 14 1.8387 4.3272 -8.5732 25 1 1.7590 2.8586 -8.3689 26 1 0.5192 4.8368 -9.0252 27 1 2.8649 4.6283 -9.6035 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9296 2.1220 0.0011 32 1 4.9613 -1.9733 -0.9943 33 1 4.6727 -2.3967 0.7134 34 1 6.8923 -1.2216 0.2767 35 1 5.8521 -0.4196 1.4771 36 1 5.8607 0.3303 -1.4738 37 1 6.9053 1.1214 -0.2704 38 1 3.0866 3.4906 -0.0592 39 1 2.1393 3.4616 -3.3176 40 1 3.8596 3.3019 -3.7460 41 1 3.8429 5.6012 -4.6733 42 1 2.1226 5.7615 -4.2453 43 1 2.2890 6.9974 -7.7084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798846677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:26 Heat of formation + Delta-G solvation = -44.246684 kcal Electronic energy + Delta-G solvation = -28274.639538 eV Core-core repulsion = 24255.419370 eV Total energy + Delta-G solvation = -4019.220168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95890 -40.02702 -36.89022 -36.63623 -35.64459 -34.61721 -33.91557 -33.00576 -32.05262 -31.20028 -29.01203 -27.49188 -25.65612 -24.59047 -22.44356 -21.91180 -21.58357 -21.01672 -19.29040 -19.12754 -17.85408 -17.56416 -16.95376 -16.53942 -15.97753 -15.71233 -15.34897 -15.24698 -15.11554 -14.61812 -14.57276 -14.31069 -13.86214 -13.44914 -13.24123 -13.20441 -13.03121 -12.72254 -12.56158 -12.41882 -12.06936 -11.82253 -11.75343 -11.64809 -11.47683 -11.28751 -11.12271 -11.10147 -11.01290 -10.87183 -10.70873 -10.42644 -10.36582 -10.15144 -9.72472 -9.52984 -9.18878 -8.62977 -8.51411 -6.13571 -4.18854 0.46846 1.56501 2.03765 2.22814 2.40748 2.75377 3.25207 3.32550 3.36404 3.92560 4.00264 4.23203 4.34243 4.36931 4.43579 4.60404 4.65904 4.69516 4.83775 4.86039 4.95632 5.08217 5.13291 5.16177 5.21872 5.22241 5.35293 5.50535 5.56234 5.64230 5.70898 5.78197 5.83825 5.87380 6.14764 6.34170 6.43730 6.59059 6.67016 7.26551 7.33186 7.42346 7.47540 7.79903 8.15422 8.84364 9.45825 10.97587 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.003505 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.489483 B = 7987.111236 C = 8584.576574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.376 5.376 3 C 0.063 3.937 4 C -0.237 4.237 5 C 0.092 3.908 6 N -0.286 5.286 7 C -0.041 4.041 8 C -0.113 4.113 9 C -0.106 4.106 10 C -0.024 4.024 11 H 0.112 0.888 12 C 0.542 3.458 13 O -0.482 6.482 14 N -1.062 6.062 15 S 2.563 3.437 16 O -0.937 6.937 17 O -0.956 6.956 18 C -0.574 4.574 19 C 0.030 3.970 20 C -0.518 4.518 21 H 0.062 0.938 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.423 0.577 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 -15.369 19.438 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.158 5.158 3 C -0.083 4.083 4 C -0.249 4.249 5 C -0.077 4.077 6 N -0.107 5.107 7 C -0.080 4.080 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.048 4.048 11 H 0.129 0.871 12 C 0.328 3.672 13 O -0.352 6.352 14 N -0.824 5.824 15 S 2.663 3.337 16 O -0.927 6.927 17 O -0.947 6.947 18 C -0.709 4.709 19 C -0.010 4.010 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.259 0.741 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.251 -15.231 18.900 24.274 hybrid contribution -0.581 -0.023 -0.774 0.968 sum -0.329 -15.254 18.125 23.692 Atomic orbital electron populations 1.21937 0.73674 1.05031 1.03493 1.48505 1.06670 1.03191 1.57393 1.22073 0.90753 0.93570 1.01875 1.19537 0.92986 0.93929 1.18457 1.22298 0.93496 0.93165 0.98697 1.77076 1.01078 1.07926 1.24630 1.20189 0.88234 0.96402 1.03145 1.21571 0.97744 0.95648 1.00173 1.21498 0.96581 0.94855 1.01431 1.19816 0.93791 0.92232 0.98951 0.87062 1.20574 0.78160 0.82104 0.86345 1.90905 1.40258 1.73835 1.30217 1.55570 1.40720 1.43560 1.42514 1.06779 0.75046 0.74434 0.77418 1.93597 1.38163 1.74859 1.86049 1.93586 1.56031 1.66269 1.78770 1.30331 1.10942 1.13341 1.16265 1.18995 0.98897 0.91514 0.91552 1.21006 1.47939 0.93628 0.93193 0.91968 1.25061 0.95168 0.94905 0.99297 1.69964 1.48708 1.04510 1.29632 0.86400 0.78187 0.79574 0.83068 1.19649 1.20791 1.20705 0.90585 0.88996 0.89088 0.81124 0.89465 0.89844 0.90317 0.91300 0.90047 0.90229 0.74108 0.86264 0.85020 0.94559 0.94779 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.85 0.69 1.32 16 2 N -0.38 -3.82 4.02 -68.29 -0.27 -4.09 16 3 C 0.06 0.61 10.52 -17.37 -0.18 0.43 16 4 C -0.24 -2.45 5.41 -104.98 -0.57 -3.02 16 5 C 0.09 0.99 7.10 -82.35 -0.58 0.41 16 6 N -0.29 -3.43 12.56 33.75 0.42 -3.01 16 7 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 8 C -0.11 -0.76 5.86 -26.53 -0.16 -0.92 16 9 C -0.11 -0.97 4.62 -26.52 -0.12 -1.09 16 10 C -0.02 -0.23 2.90 -92.63 -0.27 -0.50 16 11 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 12 C 0.54 7.28 6.80 -10.99 -0.07 7.21 16 13 O -0.48 -8.35 13.95 -11.58 -0.16 -8.51 16 14 N -1.06 -13.45 5.00 31.22 0.16 -13.29 16 15 S 2.56 46.28 5.11 -107.50 -0.55 45.74 16 16 O -0.94 -20.46 17.04 -64.79 -1.10 -21.57 16 17 O -0.96 -18.47 18.08 -57.54 -1.04 -19.51 16 18 C -0.57 -11.46 5.82 37.16 0.22 -11.25 16 19 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 20 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 21 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.17 1.18 6.01 -52.49 -0.32 0.87 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.42 3.62 6.60 -34.47 -0.23 3.39 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 40 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -38.94 367.53 -9.00 -47.95 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.93 Total: 0.73 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.78 Total: -20.56 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 1.04 Total: -46.22 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.31 Total: -49.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 46.28 SS G_CDS: -0.55 Total: 45.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.94 -9.00 -47.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798846677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.699 kcal (2) G-P(sol) polarization free energy of solvation -38.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds