Wall clock time and date at job start Tue Mar 31 2020 23:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40295 * 126.09334 * 2 1 4 4 C 1.31075 * 108.26944 * 180.02562 * 3 2 1 5 5 C 1.39298 * 108.08111 * 359.97438 * 4 3 2 6 6 C 1.34329 * 126.09201 * 179.97438 * 2 1 3 7 7 C 1.50825 * 128.03219 * 359.82446 * 6 2 1 8 8 C 1.53366 * 108.38301 * 196.65296 * 7 6 2 9 9 H 1.09001 * 109.45539 * 70.05598 * 8 7 6 10 10 C 1.50698 * 109.46895 * 190.04610 * 8 7 6 11 11 O 1.21287 * 119.99613 * 0.03005 * 10 8 7 12 12 N 1.34775 * 119.99913 * 180.02562 * 10 8 7 13 13 S 1.65600 * 119.99844 * 179.97438 * 12 10 8 14 14 O 1.42098 * 104.27576 * 308.92411 * 13 12 10 15 15 O 1.42102 * 104.27841 * 181.06538 * 13 12 10 16 16 C 1.81404 * 104.45074 * 64.99364 * 13 12 10 17 17 C 1.53000 * 109.46946 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99711 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00219 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46794 * 90.00022 * 22 20 18 24 24 H 1.48502 * 109.47140 * 210.00005 * 22 20 18 25 25 H 1.48501 * 109.46982 * 330.00118 * 22 20 18 26 26 C 1.53108 * 109.50200 * 310.05392 * 8 7 6 27 27 C 1.50833 * 127.90070 * 179.91768 * 5 4 3 28 28 H 1.08996 * 109.47580 * 270.02469 * 1 2 3 29 29 H 1.09002 * 109.46996 * 30.02502 * 1 2 3 30 30 H 1.09003 * 109.47366 * 150.02015 * 1 2 3 31 31 H 1.08001 * 125.95874 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.68522 * 76.92915 * 7 6 2 33 33 H 1.09003 * 109.68281 * 316.37558 * 7 6 2 34 34 H 0.96993 * 119.99975 * 359.97438 * 12 10 8 35 35 H 1.09002 * 109.47124 * 60.00022 * 16 13 12 36 36 H 1.09001 * 109.46975 * 300.00144 * 16 13 12 37 37 H 1.09001 * 109.47194 * 299.99756 * 17 16 13 38 38 H 1.08992 * 109.47399 * 59.99928 * 17 16 13 39 39 H 0.97000 * 119.99684 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.46562 * 190.29164 * 26 8 7 41 41 H 1.09003 * 109.46471 * 310.27137 * 26 8 7 42 42 H 1.09003 * 109.68115 * 76.82924 * 27 5 4 43 43 H 1.09004 * 109.68181 * 316.27329 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 -0.0006 5 6 3.5455 -0.6605 -0.0003 6 6 2.2562 -1.0855 0.0005 7 6 1.8436 -2.5362 0.0048 8 6 3.0535 -3.3819 0.4208 9 1 3.2689 -3.2132 1.4759 10 6 2.7474 -4.8405 0.1975 11 8 1.6701 -5.1724 -0.2500 12 7 3.6708 -5.7760 0.4951 13 16 3.3342 -7.3789 0.2503 14 8 2.0857 -7.5777 0.8990 15 8 4.5044 -8.0540 0.6908 16 6 3.1490 -7.5331 -1.5476 17 6 2.8314 -8.9866 -1.9047 18 6 2.6782 -9.1148 -3.3985 19 1 2.7952 -8.2465 -4.0298 20 6 2.3887 -10.3408 -3.9590 21 7 2.2545 -10.4527 -5.2625 22 14 2.1871 -11.8430 -2.8670 23 1 0.7649 -11.9716 -2.4598 24 1 2.5997 -13.0577 -3.6150 25 1 3.0365 -11.6937 -1.6581 26 6 4.2698 -2.9816 -0.4186 27 6 4.7398 -1.5817 -0.0025 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 4.4106 1.3706 -0.0003 32 1 1.5175 -2.8281 -0.9935 33 1 1.0304 -2.6845 0.7152 34 1 4.5325 -5.5105 0.8526 35 1 4.0764 -7.2330 -2.0355 36 1 2.3361 -6.8904 -1.8856 37 1 3.6440 -9.6297 -1.5667 38 1 1.9040 -9.2863 -1.4169 39 1 2.0512 -11.3152 -5.6568 40 1 5.0751 -3.6980 -0.2559 41 1 3.9968 -2.9755 -1.4739 42 1 5.1753 -1.6206 0.9960 43 1 5.4821 -1.2188 -0.7134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798847544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:47 Heat of formation + Delta-G solvation = -44.535285 kcal Electronic energy + Delta-G solvation = -27629.843076 eV Core-core repulsion = 23610.610394 eV Total energy + Delta-G solvation = -4019.232683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91789 -40.39669 -36.99680 -36.53092 -35.80693 -34.62130 -34.00457 -33.96453 -31.52994 -30.67429 -30.08242 -26.91995 -26.06131 -24.95638 -22.98544 -21.52555 -21.30866 -21.10761 -19.53366 -19.05935 -18.16187 -17.77937 -16.95749 -16.77397 -16.01267 -15.93360 -15.42308 -15.19338 -14.86971 -14.65596 -14.44484 -14.31051 -13.94508 -13.78652 -13.66210 -13.35179 -13.11675 -12.85349 -12.75262 -12.48794 -12.23884 -12.06995 -11.96306 -11.91189 -11.79979 -11.35436 -11.31958 -11.27312 -11.18570 -10.98396 -10.79413 -10.46745 -10.32470 -10.11143 -9.67200 -9.54683 -9.38409 -8.67957 -8.50706 -6.18119 -4.19723 0.31713 1.56061 1.92058 2.17071 2.50183 2.54759 3.25738 3.32826 3.36083 3.73790 3.92424 4.08446 4.28002 4.31343 4.34202 4.40984 4.53876 4.65261 4.78363 4.81833 4.88004 4.93068 4.97422 5.08859 5.13202 5.17283 5.24880 5.43016 5.46791 5.49480 5.53518 5.56713 5.67486 5.83282 5.96559 6.21868 6.37867 6.47401 6.70866 6.76643 6.89555 7.29664 7.41947 7.51503 8.34347 8.82787 9.40978 10.94204 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002660 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.218788 B =10522.211721 C =11018.856481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 N -0.302 5.302 4 C 0.056 3.944 5 C -0.246 4.246 6 C 0.090 3.910 7 C -0.043 4.043 8 C -0.100 4.100 9 H 0.114 0.886 10 C 0.540 3.460 11 O -0.486 6.486 12 N -1.056 6.056 13 S 2.563 3.437 14 O -0.938 6.938 15 O -0.953 6.953 16 C -0.568 4.568 17 C -0.005 4.005 18 C -0.519 4.519 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C -0.118 4.118 27 C -0.035 4.035 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.182 0.818 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.430 0.570 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 21.670 12.903 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.147 5.147 3 N -0.123 5.123 4 C -0.129 4.129 5 C -0.257 4.257 6 C -0.039 4.039 7 C -0.082 4.082 8 C -0.124 4.124 9 H 0.132 0.868 10 C 0.326 3.674 11 O -0.357 6.357 12 N -0.818 5.818 13 S 2.663 3.337 14 O -0.928 6.928 15 O -0.943 6.943 16 C -0.703 4.703 17 C -0.045 4.045 18 C -0.558 4.558 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.696 3.304 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.186 1.186 26 C -0.156 4.156 27 C -0.073 4.073 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.199 0.801 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.266 0.734 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.993 21.719 13.164 25.475 hybrid contribution 0.800 -0.980 0.064 1.267 sum 2.794 20.739 13.228 24.757 Atomic orbital electron populations 1.21914 0.74145 1.04809 1.03565 1.48196 1.06567 1.03365 1.56571 1.77538 1.01577 1.07500 1.25723 1.23563 0.95227 0.94397 0.99735 1.19895 0.94032 0.93904 1.17898 1.20805 0.91119 0.90438 1.01502 1.20160 0.97230 0.86177 1.04656 1.21398 0.97443 0.89920 1.03599 0.86840 1.20494 0.82971 0.88764 0.75188 1.90921 1.21893 1.82384 1.40523 1.55351 1.25951 1.28395 1.72059 1.06751 0.74575 0.72112 0.80295 1.93604 1.43794 1.82312 1.73104 1.93603 1.49368 1.70131 1.81249 1.30177 1.11550 1.09969 1.18570 1.19432 0.97528 0.86796 1.00737 1.20809 1.49773 0.96679 0.88555 0.90319 1.24974 0.94239 0.98835 0.94993 1.69877 1.48030 1.25294 1.10031 0.86925 0.79516 0.82704 0.81304 1.19616 1.20716 1.18629 1.21709 0.95706 0.97653 1.00481 1.19956 0.94098 0.91474 1.01821 0.90584 0.89150 0.89137 0.80064 0.88039 0.89168 0.73450 0.85341 0.84511 0.94848 0.95141 0.92331 0.90235 0.90165 0.90853 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.32 59.84 0.68 1.29 16 2 N -0.37 -3.57 4.00 -63.88 -0.26 -3.83 16 3 N -0.30 -3.35 12.59 30.55 0.38 -2.96 16 4 C 0.06 0.50 12.00 -17.48 -0.21 0.29 16 5 C -0.25 -2.12 5.91 -105.05 -0.62 -2.74 16 6 C 0.09 0.84 6.73 -82.33 -0.55 0.28 16 7 C -0.04 -0.36 4.56 -27.63 -0.13 -0.49 16 8 C -0.10 -0.78 2.49 -91.53 -0.23 -1.00 16 9 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 10 C 0.54 6.14 6.89 -10.99 -0.08 6.06 16 11 O -0.49 -7.43 13.93 -11.57 -0.16 -7.59 16 12 N -1.06 -11.47 5.42 31.22 0.17 -11.30 16 13 S 2.56 41.91 5.11 -107.50 -0.55 41.36 16 14 O -0.94 -18.70 17.04 -64.79 -1.10 -19.80 16 15 O -0.95 -17.04 18.08 -57.54 -1.04 -18.08 16 16 C -0.57 -10.37 5.82 37.16 0.22 -10.15 16 17 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 18 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 19 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 22 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 26 C -0.12 -0.75 5.18 -26.46 -0.14 -0.88 16 27 C -0.04 -0.21 6.28 -27.60 -0.17 -0.38 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.10 0.93 7.79 -51.93 -0.40 0.53 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.43 2.87 8.12 -34.47 -0.28 2.59 16 35 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 36 H 0.14 2.47 7.19 -51.92 -0.37 2.10 16 37 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 38 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 0.36 7.30 -51.93 -0.38 -0.02 16 41 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -38.61 367.21 -8.69 -47.30 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.00 Total: -0.39 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.77 Total: -20.75 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 1.07 Total: -44.24 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -2.31 Total: -45.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 41.91 SS G_CDS: -0.55 Total: 41.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.61 -8.69 -47.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798847544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.766 kcal (2) G-P(sol) polarization free energy of solvation -38.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds