Wall clock time and date at job start Tue Mar 31 2020 23:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40301 * 126.08527 * 2 1 4 4 C 1.31070 * 108.26307 * 179.91737 * 3 2 1 5 5 C 1.39289 * 108.08526 * 0.02562 * 4 3 2 6 6 C 1.34319 * 126.09572 * 179.97438 * 2 1 3 7 7 C 1.50826 * 128.03458 * 0.17131 * 6 2 1 8 8 C 1.53367 * 108.38318 * 163.34633 * 7 6 2 9 9 H 1.08998 * 109.45910 * 289.94529 * 8 7 6 10 10 C 1.50697 * 109.46491 * 169.96040 * 8 7 6 11 11 O 1.21278 * 119.99854 * 359.97044 * 10 8 7 12 12 N 1.34770 * 120.00037 * 179.97438 * 10 8 7 13 13 S 1.65593 * 120.00334 * 180.02562 * 12 10 8 14 14 O 1.42103 * 104.27715 * 308.93002 * 13 12 10 15 15 O 1.42102 * 104.28044 * 181.07445 * 13 12 10 16 16 C 1.81400 * 104.45124 * 65.00181 * 13 12 10 17 17 C 1.52999 * 109.47542 * 180.02562 * 16 13 12 18 18 C 1.50695 * 109.47057 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00538 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99661 * 179.97438 * 18 17 16 21 21 N 1.31520 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99863 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00044 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00037 * 22 20 18 26 26 C 1.53109 * 109.50501 * 49.94845 * 8 7 6 27 27 C 1.50837 * 127.90550 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.47056 * 270.02228 * 1 2 3 29 29 H 1.08993 * 109.47665 * 30.02728 * 1 2 3 30 30 H 1.09002 * 109.47107 * 150.02931 * 1 2 3 31 31 H 1.08005 * 125.95491 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.68030 * 43.62339 * 7 6 2 33 33 H 1.08993 * 109.68058 * 283.07360 * 7 6 2 34 34 H 0.97007 * 119.99820 * 0.02562 * 12 10 8 35 35 H 1.09002 * 109.47255 * 60.00089 * 16 13 12 36 36 H 1.08998 * 109.46820 * 300.00304 * 16 13 12 37 37 H 1.09002 * 109.46997 * 59.99657 * 17 16 13 38 38 H 1.09000 * 109.46625 * 300.00082 * 17 16 13 39 39 H 0.97001 * 119.99697 * 359.97438 * 21 20 18 40 40 H 1.09005 * 109.46309 * 49.74837 * 26 8 7 41 41 H 1.09004 * 109.46302 * 169.72369 * 26 8 7 42 42 H 1.09000 * 109.68259 * 43.70170 * 27 5 4 43 43 H 1.08999 * 109.68106 * 283.14536 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2913 1.1338 0.0000 4 6 3.5392 0.7327 0.0018 5 6 3.5455 -0.6602 0.0024 6 6 2.2563 -1.0853 0.0005 7 6 1.8439 -2.5361 -0.0024 8 6 3.0538 -3.3821 -0.4177 9 1 3.2692 -3.2144 -1.4730 10 6 2.7478 -4.8405 -0.1932 11 8 1.6705 -5.1720 0.2546 12 7 3.6711 -5.7763 -0.4899 13 16 3.3346 -7.3789 -0.2438 14 8 2.8685 -7.4371 1.0973 15 8 4.5236 -8.0509 -0.6360 16 6 1.9868 -7.7415 -1.4024 17 6 1.5808 -9.2106 -1.2690 18 6 0.4616 -9.5120 -2.2320 19 1 0.0778 -8.7335 -2.8746 20 6 -0.0726 -10.7817 -2.2926 21 7 0.3951 -11.7299 -1.5104 22 14 -1.4604 -11.1551 -3.4858 23 1 -0.8915 -11.6013 -4.7830 24 1 -2.2744 -9.9311 -3.6971 25 1 -2.3189 -12.2298 -2.9260 26 6 4.2702 -2.9810 0.4212 27 6 4.7399 -1.5814 0.0049 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8896 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 4.4105 1.3709 0.0027 32 1 1.0305 -2.6851 -0.7127 33 1 1.5178 -2.8270 0.9961 34 1 4.5329 -5.5110 -0.8477 35 1 2.3216 -7.5479 -2.4215 36 1 1.1309 -7.1063 -1.1744 37 1 1.2458 -9.4039 -0.2499 38 1 2.4366 -9.8461 -1.4968 39 1 1.1161 -11.5361 -0.8911 40 1 3.9974 -2.9743 1.4765 41 1 5.0756 -3.6974 0.2589 42 1 5.4825 -1.2178 0.7151 43 1 5.1749 -1.6212 -0.9938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798847545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:50 Heat of formation + Delta-G solvation = -52.664951 kcal Electronic energy + Delta-G solvation = -27556.082761 eV Core-core repulsion = 23536.497550 eV Total energy + Delta-G solvation = -4019.585211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94029 -40.40217 -36.96802 -36.54273 -35.76905 -34.62744 -34.28581 -34.00186 -31.09839 -30.69386 -30.09952 -26.94442 -25.21719 -24.91353 -23.00150 -22.06842 -21.43750 -21.12184 -19.59787 -19.05406 -18.16315 -17.72310 -16.81266 -16.77051 -16.17524 -16.02065 -15.40388 -15.23501 -14.89910 -14.63216 -14.47172 -13.94077 -13.82282 -13.80886 -13.62830 -13.35424 -13.16109 -12.92104 -12.74741 -12.48095 -12.24994 -12.15760 -12.09281 -11.88300 -11.76589 -11.37344 -11.21941 -11.09674 -10.99313 -10.82501 -10.59865 -10.53670 -10.32927 -10.22593 -10.06703 -9.57360 -8.73052 -8.52824 -8.48099 -6.50265 -4.23180 0.34637 1.54188 1.90975 2.14929 2.47775 2.58599 3.37043 3.41040 3.56800 3.74681 3.93880 4.08295 4.23528 4.28615 4.44507 4.45644 4.52205 4.63798 4.77369 4.80332 4.87388 4.90864 4.94936 5.05851 5.15719 5.22102 5.25275 5.43520 5.45820 5.52056 5.52682 5.53920 5.65182 5.80861 5.94207 6.26194 6.35568 6.48424 6.68565 6.91210 7.01973 7.29592 7.39719 7.92171 8.27388 8.69885 9.48921 10.89754 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002668 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.124727 B =10490.937415 C =11785.919268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 N -0.302 5.302 4 C 0.055 3.945 5 C -0.246 4.246 6 C 0.091 3.909 7 C -0.043 4.043 8 C -0.101 4.101 9 H 0.115 0.885 10 C 0.540 3.460 11 O -0.487 6.487 12 N -1.057 6.057 13 S 2.565 3.435 14 O -0.937 6.937 15 O -0.953 6.953 16 C -0.569 4.569 17 C 0.016 3.984 18 C -0.599 4.599 19 H 0.056 0.944 20 C 0.016 3.984 21 N -0.905 5.905 22 Si 1.077 2.923 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 C -0.116 4.116 27 C -0.035 4.035 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.430 0.570 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.271 0.729 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 24.805 1.000 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.147 5.147 3 N -0.123 5.123 4 C -0.129 4.129 5 C -0.258 4.258 6 C -0.039 4.039 7 C -0.082 4.082 8 C -0.124 4.124 9 H 0.133 0.867 10 C 0.326 3.674 11 O -0.358 6.358 12 N -0.818 5.818 13 S 2.665 3.335 14 O -0.927 6.927 15 O -0.944 6.944 16 C -0.704 4.704 17 C -0.023 4.023 18 C -0.639 4.639 19 H 0.074 0.926 20 C -0.188 4.188 21 N -0.540 5.540 22 Si 0.904 3.096 23 H -0.212 1.212 24 H -0.213 1.213 25 H -0.207 1.207 26 C -0.154 4.154 27 C -0.073 4.073 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.199 0.801 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.265 0.735 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.251 23.885 1.478 24.500 hybrid contribution 1.610 1.037 -0.161 1.922 sum 6.861 24.922 1.316 25.883 Atomic orbital electron populations 1.21919 0.74110 1.04696 1.03706 1.48202 1.06588 1.03364 1.56500 1.77542 1.01566 1.07474 1.25738 1.23557 0.95236 0.94379 0.99750 1.19889 0.94017 0.93899 1.17977 1.20802 0.91124 0.90441 1.01488 1.20162 0.97211 0.86176 1.04643 1.21409 0.97425 0.89968 1.03619 0.86677 1.20487 0.83190 0.88796 0.74964 1.90916 1.22458 1.82460 1.39974 1.55390 1.25467 1.28187 1.72750 1.06732 0.77267 0.72115 0.77406 1.93604 1.82530 1.83498 1.33084 1.93599 1.45414 1.70634 1.84739 1.30222 1.15727 1.10604 1.13827 1.19095 0.98603 0.85303 0.99291 1.21838 1.19842 0.98774 1.23412 0.92558 1.25988 1.01140 0.92390 0.99330 1.70757 1.26589 1.35008 1.21682 0.83435 0.75237 0.75755 0.75173 1.21242 1.21342 1.20730 1.21680 0.95750 0.97585 1.00386 1.19953 0.94093 0.91455 1.01844 0.90473 0.89164 0.89199 0.80062 0.89111 0.88113 0.73495 0.85884 0.84941 0.95496 0.95691 0.91892 0.90387 0.90363 0.90381 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.32 59.85 0.68 1.29 16 2 N -0.37 -3.57 4.00 -63.88 -0.26 -3.82 16 3 N -0.30 -3.33 12.59 30.54 0.38 -2.95 16 4 C 0.06 0.50 12.00 -17.49 -0.21 0.29 16 5 C -0.25 -2.13 5.91 -105.05 -0.62 -2.75 16 6 C 0.09 0.84 6.73 -82.33 -0.55 0.29 16 7 C -0.04 -0.37 4.63 -27.63 -0.13 -0.50 16 8 C -0.10 -0.81 2.50 -91.53 -0.23 -1.03 16 9 H 0.12 0.68 8.11 -51.93 -0.42 0.26 16 10 C 0.54 6.36 6.89 -10.99 -0.08 6.29 16 11 O -0.49 -7.68 13.93 -11.58 -0.16 -7.84 16 12 N -1.06 -12.09 5.42 31.22 0.17 -11.92 16 13 S 2.56 44.21 5.11 -107.50 -0.55 43.66 16 14 O -0.94 -19.65 17.04 -64.79 -1.10 -20.75 16 15 O -0.95 -18.02 18.08 -57.54 -1.04 -19.06 16 16 C -0.57 -10.99 5.82 37.16 0.22 -10.77 16 17 C 0.02 0.41 4.29 -27.89 -0.12 0.29 16 18 C -0.60 -16.75 9.11 -34.44 -0.31 -17.06 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 21 N -0.91 -27.57 13.65 55.43 0.76 -26.81 16 22 Si 1.08 24.80 29.90 -169.99 -5.08 19.72 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.12 -0.78 5.18 -26.48 -0.14 -0.92 16 27 C -0.04 -0.21 6.28 -27.62 -0.17 -0.39 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.44 7.57 -51.93 -0.39 0.04 16 31 H 0.18 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.09 0.72 7.76 -51.93 -0.40 0.32 16 33 H 0.10 0.96 7.79 -51.93 -0.40 0.55 16 34 H 0.43 3.10 8.12 -34.47 -0.28 2.82 16 35 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 36 H 0.13 2.51 7.19 -51.93 -0.37 2.14 16 37 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 38 H 0.02 0.64 8.01 -51.93 -0.42 0.23 16 39 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 40 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 41 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -39.45 368.87 -9.03 -48.48 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.94 Total: 0.32 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.76 Total: -24.59 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 1.05 Total: -45.49 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.31 Total: -47.65 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: 44.21 SS G_CDS: -0.55 Total: 43.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.45 -9.03 -48.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798847545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.183 kcal (2) G-P(sol) polarization free energy of solvation -39.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds