Wall clock time and date at job start Tue Mar 31 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.52995 * 109.47168 * 240.00283 * 2 1 3 5 5 C 1.52995 * 109.47176 * 174.99881 * 4 2 1 6 6 H 1.08995 * 109.47450 * 305.00083 * 5 4 2 7 7 O 1.42900 * 109.47215 * 64.99943 * 5 4 2 8 8 C 1.50707 * 109.47291 * 184.99823 * 5 4 2 9 9 C 1.33388 * 125.19940 * 100.00009 * 8 5 4 10 10 C 1.38433 * 114.91766 * 179.97438 * 9 8 5 11 11 C 1.33389 * 114.92022 * 0.02562 * 10 9 8 12 12 S 1.75879 * 125.20222 * 279.97535 * 8 5 4 13 13 N 1.46501 * 109.46955 * 120.00165 * 2 1 3 14 14 C 1.34776 * 120.00152 * 274.99560 * 13 2 1 15 15 O 1.21591 * 119.99571 * 0.02562 * 14 13 2 16 16 N 1.34769 * 120.00113 * 180.02562 * 14 13 2 17 17 C 1.46509 * 120.00021 * 180.02562 * 16 14 13 18 18 C 1.50692 * 109.47184 * 179.97438 * 17 16 14 19 19 O 1.21300 * 120.00241 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00340 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00718 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99275 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00432 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00091 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46902 * 90.00696 * 25 23 21 27 27 H 1.48499 * 109.47503 * 210.00170 * 25 23 21 28 28 H 1.48500 * 109.47341 * 330.00463 * 25 23 21 29 29 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47461 * 299.99789 * 1 2 3 31 31 H 1.08996 * 109.47419 * 60.00110 * 1 2 3 32 32 H 1.09000 * 109.47529 * 54.99410 * 4 2 1 33 33 H 1.09009 * 109.47150 * 294.99842 * 4 2 1 34 34 H 0.96700 * 114.00108 * 60.00439 * 7 5 4 35 35 H 1.08000 * 122.54563 * 359.95533 * 9 8 5 36 36 H 1.07998 * 122.53579 * 180.02562 * 10 9 8 37 37 H 1.07995 * 125.20209 * 180.26467 * 11 10 9 38 38 H 0.96998 * 119.99943 * 95.00661 * 13 2 1 39 39 H 0.96999 * 120.00464 * 0.02562 * 16 14 13 40 40 H 1.08990 * 109.47160 * 300.00392 * 17 16 14 41 41 H 1.08997 * 109.46638 * 60.00197 * 17 16 14 42 42 H 0.97003 * 119.99934 * 0.02562 * 20 18 17 43 43 H 0.96999 * 119.99848 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2677 7 8 4.1392 -1.3164 -0.2102 8 6 4.0570 -1.2157 -2.6044 9 6 4.3983 -0.5260 -3.6939 10 6 4.8233 -1.2966 -4.7626 11 6 4.8265 -2.6119 -4.5410 12 16 4.2698 -2.9356 -2.9042 13 7 2.0183 -0.6907 1.1962 14 6 2.1471 -0.0183 2.3571 15 8 1.8575 1.1613 2.4118 16 7 2.5968 -0.6536 3.4574 17 6 2.7362 0.0771 4.7196 18 6 3.2528 -0.8548 5.7851 19 8 3.4824 -2.0153 5.5167 20 7 3.4607 -0.3989 7.0362 21 6 3.9311 -1.2466 8.0056 22 1 4.1355 -2.2798 7.7665 23 6 4.1459 -0.7764 9.2953 24 7 3.8977 0.4810 9.5861 25 14 4.7862 -1.9316 10.6161 26 1 6.2709 -1.9000 10.6241 27 1 4.2749 -1.4999 11.9418 28 1 4.3220 -3.3134 10.3327 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.9206 -2.2581 -0.1872 35 1 4.3468 0.5518 -3.7391 36 1 5.1290 -0.8654 -5.7044 37 1 5.1295 -3.3629 -5.2554 38 1 2.2491 -1.6318 1.1526 39 1 2.8281 -1.5946 3.4137 40 1 3.4367 0.9015 4.5866 41 1 1.7653 0.4704 5.0208 42 1 3.2774 0.5292 7.2509 43 1 4.0480 0.8093 10.4864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807555140.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:41 Heat of formation + Delta-G solvation = -86.739611 kcal Electronic energy + Delta-G solvation = -26572.964805 eV Core-core repulsion = 22551.902006 eV Total energy + Delta-G solvation = -4021.062799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03300 -38.93285 -38.16058 -37.34086 -35.46325 -34.29491 -33.55311 -32.07003 -31.32251 -30.53837 -28.15772 -27.27177 -24.94197 -24.39843 -22.79536 -21.58616 -20.53586 -19.78706 -19.50407 -18.41948 -18.18223 -17.84358 -16.58782 -16.30183 -15.91668 -15.51351 -15.30622 -15.12531 -14.62963 -14.47870 -14.34388 -14.02949 -13.80543 -13.67530 -13.39612 -13.13688 -13.08771 -12.70776 -12.50787 -12.16742 -12.10640 -12.00931 -11.87389 -11.78434 -11.59124 -11.19120 -11.09497 -11.05151 -10.55309 -10.42967 -10.28018 -9.88937 -9.59118 -9.12290 -8.97158 -8.86396 -8.56484 -8.47269 -8.05123 -6.47119 -3.88934 0.56530 1.19078 1.57189 2.32876 2.92915 3.14787 3.24676 3.30257 3.55050 3.81233 3.97528 4.07824 4.13711 4.50092 4.55381 4.65207 4.69539 4.86241 4.97634 5.09221 5.13250 5.21640 5.23498 5.27808 5.39501 5.50167 5.59423 5.70772 5.85876 5.87755 6.01486 6.05365 6.08727 6.12497 6.15031 6.68164 6.87712 7.19320 7.24545 7.50057 7.97296 8.37848 8.50436 8.94428 9.09262 9.44795 9.92926 10.69886 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.001997 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.508600 B =14017.615925 C =15033.456623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.089 0.911 4 C -0.156 4.156 5 C 0.179 3.821 6 H 0.118 0.882 7 O -0.536 6.536 8 C -0.208 4.208 9 C -0.133 4.133 10 C -0.134 4.134 11 C -0.213 4.213 12 S 0.105 5.895 13 N -0.733 5.733 14 C 0.709 3.291 15 O -0.603 6.603 16 N -0.724 5.724 17 C 0.130 3.870 18 C 0.430 3.570 19 O -0.598 6.598 20 N -0.551 5.551 21 C -0.303 4.303 22 H 0.105 0.895 23 C 0.024 3.976 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.368 0.632 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.393 0.607 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 -3.079 -28.475 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.107 0.893 4 C -0.194 4.194 5 C 0.118 3.882 6 H 0.135 0.865 7 O -0.340 6.340 8 C -0.326 4.326 9 C -0.163 4.163 10 C -0.165 4.165 11 C -0.349 4.349 12 S 0.369 5.631 13 N -0.389 5.389 14 C 0.409 3.591 15 O -0.482 6.482 16 N -0.381 5.381 17 C 0.001 3.999 18 C 0.216 3.784 19 O -0.484 6.484 20 N -0.186 5.186 21 C -0.433 4.433 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.536 5.536 25 Si 0.760 3.240 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.194 1.194 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.215 0.785 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.227 0.773 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.916 -3.385 -27.395 27.757 hybrid contribution 0.491 -0.097 -0.375 0.625 sum -2.425 -3.482 -27.770 28.092 Atomic orbital electron populations 1.22221 0.95444 1.02032 1.02660 1.20627 0.93513 0.97244 0.82398 0.89272 1.22692 0.95339 1.02375 0.99030 1.20424 0.91227 0.96613 0.79934 0.86454 1.86798 1.75461 1.24927 1.46840 1.25564 1.08944 0.96708 1.01400 1.20123 1.02250 1.01437 0.92476 1.20202 1.02986 0.92801 1.00472 1.25639 1.09417 1.00160 0.99670 1.84230 1.64425 1.05142 1.09325 1.44993 1.71952 1.13427 1.08530 1.15805 0.78186 0.84886 0.80250 1.90884 1.58038 1.14452 1.84874 1.44730 1.70254 1.14842 1.08285 1.20745 1.01922 0.94289 0.82935 1.19798 0.85666 0.88886 0.84069 1.90488 1.58227 1.18526 1.81171 1.41791 1.56327 1.13048 1.07412 1.19719 1.40216 0.94927 0.88434 0.87727 1.25321 0.97386 0.96611 0.98510 1.69621 1.47931 1.14105 1.21905 0.85815 0.78900 0.80004 0.79301 1.20303 1.20848 1.19363 0.92641 0.91540 0.91934 0.88963 0.90696 0.78490 0.84108 0.84197 0.81847 0.77315 0.75716 0.90139 0.90194 0.77035 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.17 1.62 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.16 -1.04 4.51 -26.74 -0.12 -1.16 16 5 C 0.18 1.43 3.41 -27.88 -0.10 1.34 16 6 H 0.12 1.01 8.12 -51.93 -0.42 0.59 16 7 O -0.54 -5.20 11.20 -35.23 -0.39 -5.60 16 8 C -0.21 -1.61 5.48 -36.00 -0.20 -1.81 16 9 C -0.13 -0.97 10.04 -41.20 -0.41 -1.38 16 10 C -0.13 -0.90 10.18 -41.20 -0.42 -1.32 16 11 C -0.21 -1.42 11.23 29.04 0.33 -1.09 16 12 S 0.11 0.75 22.64 -107.50 -2.43 -1.68 16 13 N -0.73 -8.53 3.87 -58.68 -0.23 -8.76 16 14 C 0.71 11.62 8.53 -86.93 -0.74 10.88 16 15 O -0.60 -11.86 16.01 5.29 0.08 -11.77 16 16 N -0.72 -12.49 5.53 -66.42 -0.37 -12.86 16 17 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 18 C 0.43 10.07 7.85 -10.99 -0.09 9.98 16 19 O -0.60 -15.48 15.24 5.54 0.08 -15.40 16 20 N -0.55 -13.90 5.29 -10.97 -0.06 -13.95 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 24 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.37 2.60 8.20 45.56 0.37 2.97 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.39 3.76 7.55 -40.82 -0.31 3.45 16 39 H 0.41 6.82 7.45 -40.82 -0.30 6.51 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.40 9.63 7.90 -40.82 -0.32 9.31 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -33.59 381.75 -8.82 -42.41 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -5.11 Total: 19.36 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.84 Total: 10.23 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.07 Total: -59.04 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.23 Total: -32.76 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.43 Total: -1.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.59 -8.82 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807555140.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.334 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds