Wall clock time and date at job start Tue Mar 31 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46875 * 2 1 4 4 C 1.52996 * 109.47055 * 119.99491 * 2 1 3 5 5 C 1.53006 * 109.47102 * 185.00210 * 4 2 1 6 6 H 1.08993 * 109.46955 * 55.00306 * 5 4 2 7 7 O 1.42906 * 109.46752 * 294.99887 * 5 4 2 8 8 C 1.50698 * 109.47184 * 175.00464 * 5 4 2 9 9 C 1.33394 * 125.19897 * 264.99837 * 8 5 4 10 10 C 1.38422 * 114.91680 * 179.97438 * 9 8 5 11 11 C 1.33389 * 114.92624 * 0.02562 * 10 9 8 12 12 S 1.75883 * 125.20518 * 84.69016 * 8 5 4 13 13 N 1.46494 * 109.47264 * 239.99620 * 2 1 3 14 14 C 1.34784 * 119.99825 * 84.99770 * 13 2 1 15 15 O 1.21582 * 120.00005 * 0.02562 * 14 13 2 16 16 N 1.34775 * 119.99674 * 180.02562 * 14 13 2 17 17 C 1.46500 * 119.99902 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.47357 * 179.97438 * 17 16 14 19 19 O 1.21292 * 120.00118 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00293 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00357 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99739 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00334 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99743 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00226 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46935 * 59.99961 * 25 23 21 27 27 H 1.48495 * 109.47042 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47027 * 300.00288 * 25 23 21 29 29 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47162 * 300.00398 * 1 2 3 31 31 H 1.09003 * 109.47214 * 59.99777 * 1 2 3 32 32 H 1.09000 * 109.47145 * 64.99973 * 4 2 1 33 33 H 1.09007 * 109.47521 * 304.99979 * 4 2 1 34 34 H 0.96696 * 113.99911 * 300.00276 * 7 5 4 35 35 H 1.07994 * 122.54208 * 359.97438 * 9 8 5 36 36 H 1.08006 * 122.53568 * 180.02562 * 10 9 8 37 37 H 1.08002 * 125.20651 * 179.97438 * 11 10 9 38 38 H 0.96995 * 120.00043 * 264.99840 * 13 2 1 39 39 H 0.96995 * 120.00193 * 359.97438 * 16 14 13 40 40 H 1.09004 * 109.46993 * 299.99940 * 17 16 14 41 41 H 1.08996 * 109.47154 * 59.99504 * 17 16 14 42 42 H 0.97006 * 119.99499 * 0.02562 * 20 18 17 43 43 H 0.96996 * 119.99556 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 1 3.8570 0.4359 1.2678 7 8 4.1392 -1.3164 0.2103 8 6 4.0570 -1.2156 2.6044 9 6 4.3086 -0.5353 3.7239 10 6 4.7527 -1.3038 4.7860 11 6 4.8624 -2.6081 4.5291 12 16 4.3803 -2.9244 2.8674 13 7 2.0183 -0.6907 -1.1961 14 6 2.1470 -0.0183 -2.3571 15 8 1.8582 1.1615 -2.4117 16 7 2.5958 -0.6539 -3.4576 17 6 2.7362 0.0770 -4.7195 18 6 3.2527 -0.8551 -5.7851 19 8 3.4806 -2.0159 -5.5171 20 7 3.4604 -0.3992 -7.0363 21 6 3.9307 -1.2470 -8.0057 22 1 4.1344 -2.2803 -7.7667 23 6 4.1453 -0.7768 -9.2954 24 7 3.8979 0.4807 -9.5860 25 14 4.7855 -1.9322 -10.6163 26 1 3.8299 -3.0543 -10.7979 27 1 4.9283 -1.1912 -11.8952 28 1 6.1075 -2.4695 -10.2057 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7516 -1.7714 1.2057 33 1 1.6053 -0.2615 2.1371 34 1 3.9205 -2.2581 0.1873 35 1 4.1758 0.5340 3.7961 36 1 4.9923 -0.8794 5.7499 37 1 5.1925 -3.3561 5.2347 38 1 2.2491 -1.6318 -1.1524 39 1 2.8265 -1.5950 -3.4140 40 1 1.7658 0.4717 -5.0207 41 1 3.4379 0.9004 -4.5863 42 1 3.2777 0.5291 -7.2508 43 1 4.0481 0.8090 -10.4863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807555141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:44 Heat of formation + Delta-G solvation = -86.605442 kcal Electronic energy + Delta-G solvation = -26573.763942 eV Core-core repulsion = 22552.706961 eV Total energy + Delta-G solvation = -4021.056981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.03465 -38.93533 -38.15927 -37.34189 -35.46802 -34.29470 -33.55339 -32.07092 -31.32134 -30.53650 -28.14452 -27.27029 -24.95251 -24.39854 -22.79183 -21.57990 -20.53375 -19.78495 -19.50311 -18.42747 -18.18794 -17.84127 -16.58810 -16.28911 -15.92483 -15.51318 -15.30570 -15.12825 -14.63063 -14.47696 -14.33583 -14.03261 -13.80557 -13.67911 -13.39391 -13.13445 -13.08502 -12.71821 -12.50148 -12.16593 -12.10396 -12.00508 -11.87477 -11.78477 -11.58841 -11.18590 -11.08173 -11.05342 -10.56070 -10.47670 -10.27410 -9.89014 -9.58077 -9.11621 -8.96710 -8.86139 -8.56399 -8.47223 -8.04997 -6.46867 -3.88769 0.56887 1.19175 1.57716 2.33014 2.92906 3.16947 3.24153 3.28371 3.55045 3.81387 3.97589 4.07151 4.13682 4.50350 4.55444 4.65414 4.69562 4.86032 4.97724 5.09542 5.13214 5.21758 5.23511 5.27722 5.39452 5.50200 5.59329 5.70713 5.86007 5.87779 6.01533 6.05332 6.08759 6.12364 6.15128 6.68150 6.87786 7.18831 7.24447 7.50023 7.97193 8.37840 8.50628 8.94421 9.09299 9.44855 9.93070 10.70058 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002000 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.559160 B =13997.003063 C =15039.288804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.089 0.911 4 C -0.155 4.155 5 C 0.179 3.821 6 H 0.118 0.882 7 O -0.536 6.536 8 C -0.208 4.208 9 C -0.134 4.134 10 C -0.134 4.134 11 C -0.214 4.214 12 S 0.107 5.893 13 N -0.733 5.733 14 C 0.709 3.291 15 O -0.603 6.603 16 N -0.724 5.724 17 C 0.130 3.870 18 C 0.430 3.570 19 O -0.598 6.598 20 N -0.551 5.551 21 C -0.304 4.304 22 H 0.104 0.896 23 C 0.025 3.975 24 N -0.895 5.895 25 Si 0.934 3.066 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.368 0.632 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.393 0.607 39 H 0.406 0.594 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -3.074 28.442 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.107 0.893 4 C -0.194 4.194 5 C 0.118 3.882 6 H 0.136 0.864 7 O -0.340 6.340 8 C -0.326 4.326 9 C -0.164 4.164 10 C -0.164 4.164 11 C -0.350 4.350 12 S 0.371 5.629 13 N -0.389 5.389 14 C 0.409 3.591 15 O -0.482 6.482 16 N -0.381 5.381 17 C 0.001 3.999 18 C 0.216 3.784 19 O -0.484 6.484 20 N -0.185 5.185 21 C -0.434 4.434 22 H 0.122 0.878 23 C -0.178 4.178 24 N -0.536 5.536 25 Si 0.760 3.240 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.215 0.785 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.227 0.773 39 H 0.243 0.757 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.800 -3.362 27.320 27.668 hybrid contribution 0.363 -0.120 0.419 0.567 sum -2.437 -3.482 27.740 28.063 Atomic orbital electron populations 1.22224 0.95445 1.02029 1.02659 1.20628 0.93511 0.97247 0.82405 0.89272 1.22688 0.95286 1.02389 0.99019 1.20426 0.91234 0.96616 0.79931 0.86440 1.86798 1.75436 1.24908 1.46887 1.25583 1.08966 0.96943 1.01112 1.20104 1.02714 1.01465 0.92138 1.20196 1.02770 0.92954 1.00524 1.25642 1.09692 1.00368 0.99269 1.84240 1.64665 1.05903 1.08141 1.44992 1.71958 1.13429 1.08527 1.15807 0.78184 0.84885 0.80249 1.90882 1.58040 1.14440 1.84875 1.44728 1.70289 1.14810 1.08283 1.20746 1.01913 0.94286 0.82946 1.19797 0.85682 0.88889 0.84067 1.90485 1.58267 1.18495 1.81178 1.41785 1.56340 1.13031 1.07391 1.19669 1.40344 0.94898 0.88451 0.87781 1.25321 0.97370 0.96604 0.98503 1.69614 1.47922 1.14075 1.21963 0.85873 0.79439 0.79514 0.79126 1.19825 1.20899 1.19814 0.92641 0.91940 0.91536 0.90687 0.88968 0.78498 0.84116 0.84213 0.81852 0.77314 0.75718 0.90188 0.90154 0.77031 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.17 1.62 2.57 -67.94 -0.17 1.44 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.16 -1.03 4.51 -26.73 -0.12 -1.15 16 5 C 0.18 1.43 3.40 -27.88 -0.09 1.34 16 6 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 7 O -0.54 -5.20 11.16 -35.23 -0.39 -5.59 16 8 C -0.21 -1.61 5.52 -36.00 -0.20 -1.81 16 9 C -0.13 -0.97 10.05 -41.21 -0.41 -1.39 16 10 C -0.13 -0.90 10.18 -41.21 -0.42 -1.32 16 11 C -0.21 -1.43 11.23 29.04 0.33 -1.11 16 12 S 0.11 0.77 22.54 -107.50 -2.42 -1.65 16 13 N -0.73 -8.53 3.87 -58.68 -0.23 -8.75 16 14 C 0.71 11.62 8.53 -86.91 -0.74 10.88 16 15 O -0.60 -11.85 16.01 5.29 0.08 -11.77 16 16 N -0.72 -12.49 5.53 -66.41 -0.37 -12.86 16 17 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 18 C 0.43 10.06 7.85 -10.99 -0.09 9.98 16 19 O -0.60 -15.48 15.24 5.55 0.08 -15.40 16 20 N -0.55 -13.89 5.29 -10.97 -0.06 -13.95 16 21 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 24 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.37 2.60 8.14 45.56 0.37 2.97 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.39 3.75 7.55 -40.82 -0.31 3.44 16 39 H 0.41 6.82 7.45 -40.82 -0.30 6.51 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.40 9.63 7.90 -40.82 -0.32 9.31 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -33.56 381.60 -8.81 -42.37 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -5.12 Total: 19.37 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.84 Total: 10.21 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.07 Total: -59.03 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.22 Total: -32.75 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.42 Total: -1.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.56 -8.81 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807555141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.238 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds