Wall clock time and date at job start Tue Mar 31 2020 23:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 C 1.53004 * 109.47475 * 185.00095 * 4 2 1 6 6 H 1.09000 * 109.46769 * 305.00527 * 5 4 2 7 7 O 1.42897 * 109.46871 * 64.99800 * 5 4 2 8 8 C 1.50696 * 109.47098 * 185.00103 * 5 4 2 9 9 C 1.33388 * 125.20085 * 99.72268 * 8 5 4 10 10 C 1.38428 * 114.91692 * 179.85612 * 9 8 5 11 11 C 1.33381 * 114.92263 * 0.42782 * 10 9 8 12 12 S 1.75883 * 109.59467 * 359.77107 * 11 10 9 13 13 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 14 14 C 1.34773 * 120.00431 * 85.00044 * 13 2 1 15 15 O 1.21593 * 119.99894 * 359.97438 * 14 13 2 16 16 N 1.34777 * 120.00097 * 179.72742 * 14 13 2 17 17 C 1.46504 * 119.99854 * 180.27545 * 16 14 13 18 18 C 1.50701 * 109.46923 * 179.97438 * 17 16 14 19 19 O 1.21297 * 119.99993 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99977 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99931 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00191 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99788 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00457 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99903 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47041 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47126 * 119.99929 * 25 23 21 28 28 H 1.48496 * 109.47151 * 239.99653 * 25 23 21 29 29 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 31 31 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 32 32 H 1.09000 * 109.47070 * 305.00048 * 4 2 1 33 33 H 1.08992 * 109.47139 * 64.99982 * 4 2 1 34 34 H 0.96701 * 114.00481 * 60.00268 * 7 5 4 35 35 H 1.07998 * 122.54145 * 0.02562 * 9 8 5 36 36 H 1.08002 * 122.53818 * 180.19547 * 10 9 8 37 37 H 1.07995 * 125.20758 * 179.79152 * 11 10 9 38 38 H 0.97000 * 119.99456 * 264.99607 * 13 2 1 39 39 H 0.97000 * 119.99736 * 0.26819 * 16 14 13 40 40 H 1.08998 * 109.46968 * 299.99782 * 17 16 14 41 41 H 1.08997 * 109.47198 * 59.99605 * 17 16 14 42 42 H 0.97003 * 119.99587 * 0.02562 * 20 18 17 43 43 H 0.96990 * 120.00229 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3868 7 8 3.9385 0.7550 1.4880 8 6 4.0773 -1.4258 2.4748 9 6 4.5991 -2.6502 2.3856 10 6 5.0061 -3.1998 3.5891 11 6 4.8066 -2.4254 4.6566 12 16 4.0721 -0.9079 4.1556 13 7 2.0183 -0.6905 -1.1962 14 6 2.1470 -0.0182 -2.3571 15 8 1.8574 1.1614 -2.4119 16 7 2.6015 -0.6522 -3.4562 17 6 2.7472 0.0801 -4.7167 18 6 3.2694 -0.8505 -5.7808 19 8 3.4970 -2.0113 -5.5129 20 7 3.4825 -0.3930 -7.0306 21 6 3.9570 -1.2397 -7.9988 22 1 4.1605 -2.2732 -7.7600 23 6 4.1773 -0.7680 -9.2870 24 7 3.9302 0.4896 -9.5776 25 14 4.8246 -1.9215 -10.6061 26 1 5.0205 -3.2750 -10.0274 27 1 3.8469 -1.9963 -11.7215 28 1 6.1213 -1.4100 -11.1181 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7714 1.2056 34 1 3.5896 1.1584 2.2946 35 1 4.6990 -3.1720 1.4453 36 1 5.4480 -4.1828 3.6589 37 1 5.0580 -2.6896 5.6732 38 1 2.2490 -1.6317 -1.1526 39 1 2.8322 -1.5934 -3.4126 40 1 1.7779 0.4743 -5.0219 41 1 3.4475 0.9040 -4.5794 42 1 3.3001 0.5353 -7.2449 43 1 4.0836 0.8187 -10.4769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807555142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:47 Heat of formation + Delta-G solvation = -89.464694 kcal Electronic energy + Delta-G solvation = -26432.784792 eV Core-core repulsion = 22411.603824 eV Total energy + Delta-G solvation = -4021.180968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07282 -38.96372 -38.19617 -37.34801 -35.62563 -34.34957 -33.60986 -31.90406 -31.34933 -30.70319 -28.18069 -27.32683 -24.94189 -24.43643 -22.80944 -21.57638 -20.54310 -19.83350 -19.55542 -18.47415 -18.25687 -17.90281 -16.49660 -16.27844 -15.96024 -15.56582 -15.32543 -15.30118 -14.65955 -14.51285 -14.40432 -14.06118 -13.87273 -13.67552 -13.42644 -13.15992 -13.08584 -12.68727 -12.53731 -12.19561 -12.15002 -12.04122 -11.88462 -11.82945 -11.61699 -11.17183 -11.13162 -11.05543 -10.56113 -10.39810 -10.31133 -9.95841 -9.62888 -9.20054 -9.01664 -8.86826 -8.60130 -8.57255 -8.07942 -6.49600 -3.91535 0.56317 1.18197 1.56014 2.34139 2.84458 3.11457 3.23515 3.30265 3.46074 3.77678 3.98742 4.05207 4.11083 4.45426 4.51020 4.66687 4.74796 4.79588 4.93392 5.08359 5.16296 5.19150 5.20911 5.28874 5.41286 5.52941 5.57729 5.73292 5.87157 5.88271 5.99824 6.04585 6.06379 6.11184 6.12460 6.58579 6.80119 7.13311 7.18266 7.47929 7.94719 8.28517 8.47389 8.85776 9.06692 9.41902 9.89747 10.67406 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.001947 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.141792 B =14379.673392 C =15370.161747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.098 0.902 4 C -0.155 4.155 5 C 0.178 3.822 6 H 0.120 0.880 7 O -0.542 6.542 8 C -0.209 4.209 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.212 4.212 12 S 0.099 5.901 13 N -0.745 5.745 14 C 0.706 3.294 15 O -0.595 6.595 16 N -0.725 5.725 17 C 0.129 3.871 18 C 0.429 3.571 19 O -0.598 6.598 20 N -0.550 5.550 21 C -0.304 4.304 22 H 0.106 0.894 23 C 0.025 3.975 24 N -0.894 5.894 25 Si 0.932 3.068 26 H -0.267 1.267 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.370 0.630 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.393 0.607 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -3.209 28.285 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.116 0.884 4 C -0.194 4.194 5 C 0.117 3.883 6 H 0.137 0.863 7 O -0.347 6.347 8 C -0.326 4.326 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.348 4.348 12 S 0.362 5.638 13 N -0.401 5.401 14 C 0.406 3.594 15 O -0.473 6.473 16 N -0.383 5.383 17 C 0.000 4.000 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.185 5.185 21 C -0.433 4.433 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.535 5.535 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.217 0.783 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.182 0.818 38 H 0.227 0.773 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.151 -1.580 28.392 28.610 hybrid contribution 0.645 -2.191 -0.931 2.466 sum -2.505 -3.771 27.461 27.832 Atomic orbital electron populations 1.22213 0.95386 1.02029 1.02681 1.20693 0.93553 0.97799 0.81999 0.88443 1.22668 0.95178 1.02714 0.98812 1.20431 0.93265 0.80591 0.94043 0.86296 1.86744 1.77140 1.23925 1.46852 1.25527 1.08427 1.00437 0.98232 1.20164 1.01082 0.95018 0.99814 1.20223 1.02856 1.01609 0.91583 1.25621 1.08312 0.97619 1.03245 1.84121 1.61074 1.18743 0.99841 1.45147 1.72561 1.13438 1.08993 1.15839 0.78391 0.84977 0.80207 1.90904 1.57495 1.14304 1.84643 1.44775 1.70125 1.14826 1.08537 1.20770 1.02017 0.94281 0.82889 1.19785 0.85756 0.88865 0.84090 1.90487 1.58435 1.18469 1.81125 1.41798 1.56106 1.13062 1.07515 1.19769 1.40049 0.94944 0.88557 0.87657 1.25330 0.97365 0.96598 0.98525 1.69622 1.47909 1.14051 1.21888 0.85759 0.78302 0.80049 0.79973 1.19165 1.20641 1.20631 0.92626 0.91918 0.91537 0.89743 0.89857 0.78276 0.83928 0.84072 0.81822 0.77319 0.75723 0.90076 0.90030 0.77010 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.16 1.63 2.53 -67.93 -0.17 1.46 16 3 H 0.10 1.21 7.13 -51.92 -0.37 0.84 16 4 C -0.16 -1.08 4.41 -26.73 -0.12 -1.20 16 5 C 0.18 1.50 3.35 -27.88 -0.09 1.41 16 6 H 0.12 1.13 7.60 -51.93 -0.39 0.74 16 7 O -0.54 -5.38 12.73 -35.23 -0.45 -5.83 16 8 C -0.21 -1.68 5.48 -36.01 -0.20 -1.87 16 9 C -0.13 -1.02 10.04 -41.21 -0.41 -1.44 16 10 C -0.13 -0.94 10.18 -41.21 -0.42 -1.36 16 11 C -0.21 -1.42 11.23 29.03 0.33 -1.09 16 12 S 0.10 0.68 22.64 -107.50 -2.43 -1.75 16 13 N -0.75 -8.55 4.45 -58.68 -0.26 -8.81 16 14 C 0.71 11.39 8.53 -86.92 -0.74 10.65 16 15 O -0.59 -11.65 16.01 5.28 0.08 -11.56 16 16 N -0.73 -12.21 5.53 -66.41 -0.37 -12.57 16 17 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 18 C 0.43 9.92 7.85 -10.99 -0.09 9.83 16 19 O -0.60 -15.31 15.24 5.54 0.08 -15.23 16 20 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 22 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 24 N -0.89 -24.04 13.05 55.50 0.72 -23.31 16 25 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.37 2.48 8.45 45.56 0.39 2.86 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.39 3.57 8.62 -40.82 -0.35 3.21 16 39 H 0.41 6.58 7.45 -40.82 -0.30 6.28 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.55 7.90 -40.82 -0.32 9.22 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -33.57 384.02 -8.84 -42.41 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -5.10 Total: 19.34 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.84 Total: 9.72 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.04 Total: -58.50 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.28 Total: -32.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.43 Total: -1.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.57 -8.84 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807555142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.050 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds