Wall clock time and date at job start Tue Mar 31 2020 23:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 C 1.50697 * 109.47511 * 239.99568 * 2 1 3 5 5 O 1.20826 * 120.00679 * 240.00233 * 4 2 1 6 6 O 1.34231 * 119.99722 * 60.00278 * 4 2 1 7 7 C 1.45205 * 117.00283 * 180.02562 * 6 4 2 8 8 C 1.50692 * 109.47609 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99565 * 4.96148 * 8 7 6 10 10 N 1.34769 * 120.00497 * 184.96713 * 8 7 6 11 11 C 1.37147 * 119.99808 * 4.31623 * 10 8 7 12 12 H 1.07997 * 119.99730 * 59.09791 * 11 10 8 13 13 C 1.38884 * 119.99883 * 239.10382 * 11 10 8 14 14 N 1.31422 * 120.00499 * 357.01000 * 13 11 10 15 15 Si 1.86799 * 119.99745 * 177.01123 * 13 11 10 16 16 H 1.48500 * 109.47192 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47082 * 120.00241 * 15 13 11 18 18 H 1.48510 * 109.47251 * 239.99723 * 15 13 11 19 19 C 1.39791 * 120.00149 * 184.32310 * 10 8 7 20 20 C 1.38964 * 120.07676 * 174.20451 * 19 10 8 21 21 C 1.38076 * 119.92119 * 179.97438 * 20 19 10 22 22 C 1.38308 * 120.07824 * 359.96930 * 21 20 19 23 23 C 1.38302 * 120.15622 * 0.05092 * 22 21 20 24 24 C 1.38084 * 120.08024 * 359.95323 * 23 22 21 25 25 C 1.53007 * 109.47173 * 119.99932 * 2 1 3 26 26 C 1.53004 * 109.46650 * 294.99966 * 25 2 1 27 27 F 1.39898 * 109.46911 * 54.99696 * 25 2 1 28 28 F 1.39896 * 109.46985 * 175.00362 * 25 2 1 29 29 H 1.09007 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47803 * 300.00005 * 1 2 3 31 31 H 1.09001 * 109.47158 * 60.00754 * 1 2 3 32 32 H 1.09008 * 109.46939 * 59.99333 * 7 6 4 33 33 H 1.09006 * 109.46585 * 300.00135 * 7 6 4 34 34 H 0.97000 * 120.00596 * 184.99456 * 14 13 11 35 35 H 1.08001 * 120.04015 * 359.69396 * 20 19 10 36 36 H 1.08003 * 119.95990 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.92023 * 180.02562 * 22 21 20 38 38 H 1.08009 * 119.96282 * 179.97438 * 23 22 21 39 39 H 1.07995 * 120.04324 * 180.02562 * 24 23 22 40 40 H 1.09003 * 109.47026 * 60.00338 * 26 25 2 41 41 H 1.09004 * 109.46538 * 179.97438 * 26 25 2 42 42 H 1.08993 * 109.47286 * 299.99787 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9864 -3.5896 8 6 1.7621 -0.3300 -4.8639 9 8 1.1386 0.7093 -4.8182 10 7 2.0391 -0.8977 -6.0544 11 6 2.6660 -2.1166 -6.1035 12 1 2.2120 -2.9765 -5.6337 13 6 3.8846 -2.2448 -6.7574 14 7 4.4086 -1.2124 -7.3792 15 14 4.7787 -3.8849 -6.7529 16 1 3.9844 -4.8797 -5.9882 17 1 4.9525 -4.3577 -8.1499 18 1 6.1105 -3.7209 -6.1166 19 6 1.6876 -0.2443 -7.2391 20 6 2.0781 -0.7680 -8.4656 21 6 1.7287 -0.1202 -9.6339 22 6 0.9905 1.0483 -9.5844 23 6 0.6005 1.5727 -8.3655 24 6 0.9464 0.9302 -7.1932 25 6 2.0400 -0.7213 1.2493 26 6 1.6352 0.0690 2.4953 27 9 1.4821 -2.0028 1.3082 28 9 3.4342 -0.8216 1.1933 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8627 -2.0133 -3.5565 33 1 3.3164 -0.9861 -3.5567 34 1 5.2223 -1.3194 -7.8963 35 1 2.6581 -1.6783 -8.5049 36 1 2.0323 -0.5265 -10.5874 37 1 0.7182 1.5527 -10.4998 38 1 0.0244 2.4856 -8.3305 39 1 0.6412 1.3399 -6.2417 40 1 0.5488 0.1472 2.5390 41 1 1.9981 -0.4451 3.3854 42 1 2.0698 1.0675 2.4494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815491586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:55 Heat of formation + Delta-G solvation = -170.087524 kcal Electronic energy + Delta-G solvation = -30177.252544 eV Core-core repulsion = 25566.442370 eV Total energy + Delta-G solvation = -4610.810174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.04157 -47.00962 -40.44772 -39.62842 -37.33756 -36.15607 -35.11070 -35.06950 -32.08145 -30.40143 -29.71266 -29.51455 -27.41791 -25.75056 -25.22782 -22.80202 -21.72962 -21.19769 -20.34532 -19.64467 -18.00226 -17.90187 -17.58642 -17.02487 -16.43907 -16.29081 -15.91607 -15.65163 -15.49938 -15.10695 -14.63825 -14.28155 -13.99685 -13.73640 -13.47566 -13.29018 -13.23180 -13.04966 -13.00907 -12.86238 -12.68580 -12.42542 -12.32199 -12.28566 -12.15644 -11.85473 -11.79238 -11.53373 -11.38790 -11.10745 -11.05813 -10.86202 -10.48551 -10.37196 -10.31024 -10.04828 -9.26900 -8.83340 -8.25950 -7.80936 -6.99054 -6.34888 -4.71545 2.25739 2.34955 2.48852 2.56080 2.99898 3.10180 3.13503 3.42810 3.58138 3.76293 3.88064 4.12096 4.13658 4.45356 4.65655 4.68424 4.79238 4.95450 5.08327 5.15069 5.30331 5.36132 5.44226 5.50938 5.55297 5.72225 5.83755 5.86707 5.90550 6.03031 6.14910 6.59619 6.69489 6.72785 6.86398 7.11687 7.16289 7.49122 7.57856 7.66725 7.72892 7.82436 7.99520 8.36702 8.72757 9.08225 9.45815 10.36791 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003299 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.484452 B = 8484.927238 C =10118.386185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 H 0.137 0.863 4 C 0.461 3.539 5 O -0.491 6.491 6 O -0.332 6.332 7 C 0.072 3.928 8 C 0.498 3.502 9 O -0.548 6.548 10 N -0.378 5.378 11 C -0.380 4.380 12 H 0.097 0.903 13 C 0.056 3.944 14 N -0.839 5.839 15 Si 0.919 3.081 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.178 3.822 20 C -0.089 4.089 21 C -0.128 4.128 22 C -0.169 4.169 23 C -0.124 4.124 24 C -0.190 4.190 25 C 0.305 3.695 26 C -0.194 4.194 27 F -0.191 7.191 28 F -0.190 7.190 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.277 0.723 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.174 0.826 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 2.565 12.533 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 H 0.154 0.846 4 C 0.302 3.698 5 O -0.377 6.377 6 O -0.247 6.247 7 C -0.004 4.004 8 C 0.288 3.712 9 O -0.431 6.431 10 N -0.088 5.088 11 C -0.507 4.507 12 H 0.115 0.885 13 C -0.154 4.154 14 N -0.471 5.471 15 Si 0.744 3.256 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.200 1.200 19 C 0.083 3.917 20 C -0.110 4.110 21 C -0.147 4.147 22 C -0.188 4.188 23 C -0.143 4.143 24 C -0.210 4.210 25 C 0.268 3.732 26 C -0.252 4.252 27 F -0.172 7.172 28 F -0.171 7.171 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.190 0.810 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.209 2.763 12.561 13.876 hybrid contribution 1.073 -1.057 -0.461 1.575 sum -4.136 1.707 12.099 12.900 Atomic orbital electron populations 1.21855 0.89536 1.04412 1.04795 1.22154 1.00947 1.02437 0.89164 0.84558 1.23042 0.78277 0.83265 0.85224 1.90754 1.34593 1.25152 1.87225 1.86436 1.69067 1.55108 1.14091 1.22637 1.00778 0.95462 0.81509 1.20212 0.81506 0.84308 0.85136 1.90230 1.42435 1.24102 1.86305 1.40792 1.48979 1.17736 1.01256 1.19476 1.02364 0.86223 1.42635 0.88546 1.25715 0.95905 0.98698 0.95094 1.70035 1.19992 1.29806 1.27260 0.85972 0.79690 0.81265 0.78674 1.18657 1.20046 1.20042 1.18289 0.94068 0.92608 0.86777 1.21097 0.97974 1.01865 0.90051 1.20783 1.00190 0.96451 0.97314 1.20814 1.03099 0.98003 0.96903 1.20843 1.01370 0.99465 0.92638 1.22757 1.00744 0.96118 1.01365 1.20748 0.75457 0.80792 0.96173 1.22829 1.04817 1.01685 0.95843 1.93033 1.84873 1.41967 1.97336 1.93065 1.30173 1.96422 1.97401 0.90929 0.90301 0.89183 0.88341 0.87891 0.91288 0.84505 0.87752 0.88182 0.87711 0.81011 0.88724 0.89495 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.71 37.15 0.32 -1.01 16 2 C -0.13 -1.44 2.52 -91.77 -0.23 -1.67 16 3 H 0.14 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.46 7.61 7.03 36.00 0.25 7.86 16 5 O -0.49 -9.53 14.57 -18.75 -0.27 -9.80 16 6 O -0.33 -6.13 9.66 -45.89 -0.44 -6.57 16 7 C 0.07 1.47 4.85 36.00 0.17 1.65 16 8 C 0.50 11.71 7.65 -10.99 -0.08 11.62 16 9 O -0.55 -13.41 12.90 -14.06 -0.18 -13.59 16 10 N -0.38 -9.36 2.64 -58.98 -0.16 -9.51 16 11 C -0.38 -9.17 7.48 -14.93 -0.11 -9.28 16 12 H 0.10 2.22 7.66 -52.49 -0.40 1.82 16 13 C 0.06 1.34 4.04 -17.49 -0.07 1.27 16 14 N -0.84 -21.25 10.71 55.49 0.59 -20.65 16 15 Si 0.92 18.58 29.56 -169.99 -5.02 13.56 16 16 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 C 0.18 4.44 6.04 -83.69 -0.51 3.93 16 20 C -0.09 -2.12 7.72 -39.37 -0.30 -2.42 16 21 C -0.13 -2.68 10.04 -39.62 -0.40 -3.08 16 22 C -0.17 -3.33 10.04 -39.53 -0.40 -3.73 16 23 C -0.12 -2.56 10.04 -39.61 -0.40 -2.96 16 24 C -0.19 -4.47 9.05 -39.37 -0.36 -4.83 16 25 C 0.30 3.47 1.50 -26.73 -0.04 3.43 16 26 C -0.19 -1.26 9.14 37.16 0.34 -0.92 16 27 F -0.19 -2.61 15.75 2.25 0.04 -2.57 16 28 F -0.19 -2.73 15.82 2.25 0.04 -2.70 16 29 H 0.07 0.71 7.68 -51.92 -0.40 0.31 16 30 H 0.08 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.10 1.91 7.75 -51.92 -0.40 1.51 16 33 H 0.10 2.14 8.13 -51.93 -0.42 1.71 16 34 H 0.28 6.60 8.32 -40.82 -0.34 6.26 16 35 H 0.14 3.37 5.11 -52.49 -0.27 3.10 16 36 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 39 H 0.17 4.17 4.52 -56.32 -0.25 3.91 16 40 H 0.09 0.43 6.57 -51.93 -0.34 0.09 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -30.72 357.80 -6.75 -37.47 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.92 Total: 9.11 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.80 Total: -0.12 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.44 Total: -30.16 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.90 Total: -29.97 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.07 Total: -5.27 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.72 -6.75 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815491586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.622 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds