Wall clock time and date at job start Tue Mar 31 2020 23:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47081 * 2 1 4 4 O 1.45198 * 109.47067 * 119.99901 * 2 1 3 5 5 C 1.34811 * 116.99901 * 269.99992 * 4 2 1 6 6 O 1.21531 * 120.00072 * 359.97438 * 5 4 2 7 7 C 1.47282 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.39297 * 120.29009 * 354.20804 * 7 5 4 9 9 C 1.38197 * 120.08718 * 180.29507 * 8 7 5 10 10 C 1.38843 * 120.68286 * 359.44963 * 9 8 7 11 11 C 1.37605 * 120.57950 * 0.55059 * 10 9 8 12 12 C 1.40701 * 119.88863 * 359.72873 * 11 10 9 13 13 C 1.40857 * 120.33087 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99551 * 145.83811 * 13 12 11 15 15 C 1.40297 * 120.00271 * 325.83931 * 13 12 11 16 16 N 1.30606 * 119.99662 * 350.75773 * 15 13 12 17 17 Si 1.86805 * 119.99918 * 170.75439 * 15 13 12 18 18 H 1.48501 * 109.46830 * 89.99880 * 17 15 13 19 19 H 1.48498 * 109.46888 * 209.99914 * 17 15 13 20 20 H 1.48494 * 109.47268 * 330.00188 * 17 15 13 21 21 C 1.50696 * 109.46999 * 239.99494 * 2 1 3 22 22 O 1.21265 * 120.00297 * 245.00280 * 21 2 1 23 23 N 1.34785 * 119.99808 * 65.00069 * 21 2 1 24 24 C 1.38930 * 119.99805 * 179.97438 * 23 21 2 25 25 N 1.32403 * 119.20690 * 359.72827 * 24 23 21 26 26 C 1.32280 * 120.75117 * 179.75998 * 25 24 23 27 27 C 1.38613 * 119.18517 * 0.50820 * 26 25 24 28 28 C 1.38607 * 118.53295 * 359.74991 * 27 26 25 29 29 N 1.32274 * 119.18733 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47167 * 300.00724 * 1 2 3 32 32 H 1.08997 * 109.47265 * 59.99877 * 1 2 3 33 33 H 1.08000 * 119.95390 * 0.02562 * 8 7 5 34 34 H 1.07997 * 119.66175 * 179.71796 * 9 8 7 35 35 H 1.07997 * 119.71062 * 180.28361 * 10 9 8 36 36 H 1.07997 * 120.05308 * 179.75055 * 11 10 9 37 37 H 0.97008 * 120.00053 * 180.02562 * 16 15 13 38 38 H 0.96995 * 119.99883 * 0.02562 * 23 21 2 39 39 H 1.08006 * 120.40665 * 180.25710 * 26 25 24 40 40 H 1.08000 * 120.73116 * 179.77135 * 27 26 25 41 41 H 1.08008 * 120.40314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2180 0.0673 2.2858 6 8 1.9978 1.2621 2.2549 7 6 2.7077 -0.5593 3.5255 8 6 2.8475 -1.9430 3.6055 9 6 3.3016 -2.5270 4.7728 10 6 3.6341 -1.7473 5.8725 11 6 3.5066 -0.3780 5.8239 12 6 3.0411 0.2417 4.6496 13 6 2.9077 1.6426 4.5895 14 1 3.0965 2.1637 3.6625 15 6 2.5296 2.3611 5.7337 16 7 2.1272 1.7247 6.8009 17 14 2.6016 4.2277 5.7307 18 1 1.3019 4.7724 5.2625 19 1 2.8758 4.7147 7.1065 20 1 3.6844 4.6798 4.8206 21 6 2.0323 -0.7105 -1.2304 22 8 2.6528 -1.7467 -1.1214 23 7 1.7918 -0.1943 -2.4520 24 6 2.2554 -0.8491 -3.5863 25 7 2.9363 -1.9762 -3.4487 26 6 3.3878 -2.6272 -4.5080 27 6 3.1492 -2.1100 -5.7717 28 6 2.4376 -0.9253 -5.8786 29 7 2.0107 -0.3277 -4.7785 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.5965 -2.5604 2.7557 34 1 3.4030 -3.6007 4.8289 35 1 3.9917 -2.2199 6.7753 36 1 3.7639 0.2200 6.6856 37 1 1.8654 2.2214 7.5920 38 1 1.2958 0.6347 -2.5392 39 1 3.9391 -3.5484 -4.3896 40 1 3.5096 -2.6189 -6.6535 41 1 2.2341 -0.4955 -6.8484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822655917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:09 Heat of formation + Delta-G solvation = -25.855826 kcal Electronic energy + Delta-G solvation = -28361.372463 eV Core-core repulsion = 24207.505832 eV Total energy + Delta-G solvation = -4153.866632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52471 -40.06846 -39.02023 -37.28484 -35.49788 -35.16206 -33.94023 -33.78205 -32.24246 -30.73899 -30.01279 -29.52491 -25.73249 -25.41137 -24.90956 -23.84365 -22.51186 -21.13773 -20.59839 -19.69692 -18.86055 -17.85349 -17.43254 -16.88771 -16.52238 -16.11634 -15.94366 -15.58504 -15.31475 -15.11354 -14.79165 -14.44282 -14.20240 -13.90959 -13.71953 -13.50692 -13.02625 -12.84467 -12.66211 -12.48072 -12.08967 -11.72267 -11.54965 -11.33768 -11.19698 -11.16965 -11.10764 -11.02933 -10.73515 -10.64626 -10.26451 -10.22428 -9.84008 -9.71890 -9.36241 -9.19356 -8.98420 -8.87640 -7.66653 -7.45013 -6.91172 -4.52022 0.65147 0.86581 2.08939 2.18033 2.46532 2.78531 3.03680 3.10216 3.18762 3.43764 3.64498 3.82089 3.86895 3.88518 4.18772 4.36724 4.57431 4.62906 4.85947 4.88617 4.94570 5.09384 5.39313 5.45491 5.53282 5.72228 5.73801 6.01547 6.13448 6.15813 6.21903 6.36444 6.52555 6.71668 6.81465 6.91429 7.03247 7.11404 7.21074 7.43618 7.61680 7.84609 7.88348 7.92010 8.03710 8.11770 8.52827 8.67637 8.75576 8.98464 10.03339 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016539 B = 0.002652 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.559463 B =10557.511574 C =11722.244648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 H 0.111 0.889 4 O -0.339 6.339 5 C 0.506 3.494 6 O -0.514 6.514 7 C -0.249 4.249 8 C -0.034 4.034 9 C -0.246 4.246 10 C -0.089 4.089 11 C -0.149 4.149 12 C 0.149 3.851 13 C -0.416 4.416 14 H 0.105 0.895 15 C 0.070 3.930 16 N -0.785 5.785 17 Si 0.919 3.081 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.512 3.488 22 O -0.438 6.438 23 N -0.640 5.640 24 C 0.542 3.458 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.268 4.268 28 C 0.178 3.822 29 N -0.552 5.552 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.285 0.715 38 H 0.424 0.576 39 H 0.172 0.828 40 H 0.148 0.852 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -2.915 -19.050 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 H 0.129 0.871 4 O -0.257 6.257 5 C 0.358 3.642 6 O -0.404 6.404 7 C -0.252 4.252 8 C -0.053 4.053 9 C -0.266 4.266 10 C -0.107 4.107 11 C -0.168 4.168 12 C 0.145 3.855 13 C -0.444 4.444 14 H 0.123 0.877 15 C -0.149 4.149 16 N -0.409 5.409 17 Si 0.743 3.257 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.182 1.182 21 C 0.296 3.704 22 O -0.302 6.302 23 N -0.292 5.292 24 C 0.186 3.814 25 N -0.224 5.224 26 C 0.011 3.989 27 C -0.292 4.292 28 C 0.011 3.989 29 N -0.272 5.272 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.262 0.738 39 H 0.189 0.811 40 H 0.166 0.834 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.459 -2.792 -17.744 18.021 hybrid contribution -0.107 0.841 -0.858 1.207 sum -1.566 -1.951 -18.602 18.770 Atomic orbital electron populations 1.22160 0.92138 1.03830 1.04022 1.22015 0.95621 0.97574 0.82995 0.87116 1.86775 1.78497 1.41590 1.18829 1.21535 0.74900 0.85101 0.82711 1.90725 1.50575 1.15907 1.83232 1.18693 1.20220 0.93020 0.93293 1.20890 0.94529 0.93464 0.96396 1.20382 1.13416 0.97763 0.95006 1.20878 0.98747 0.94445 0.96668 1.21297 1.03248 0.93237 0.99052 1.17445 0.86007 0.93008 0.89066 1.20193 1.35245 0.91832 0.97120 0.87740 1.26148 0.92634 1.01965 0.94193 1.69703 1.29179 1.38869 1.03198 0.86119 0.80095 0.81191 0.78277 1.19176 1.20135 1.18216 1.20745 0.80398 0.86103 0.83184 1.90848 1.33838 1.20627 1.84854 1.43237 1.55641 1.27324 1.03002 1.19460 0.89101 0.87161 0.85628 1.68544 1.12225 1.07572 1.34023 1.23283 0.91210 0.97350 0.87059 1.22773 1.05734 1.00291 1.00415 1.22970 0.89118 0.90560 0.96244 1.67800 1.25716 1.35701 0.98018 0.91044 0.89818 0.90880 0.87690 0.88707 0.88794 0.86211 0.90433 0.73790 0.81121 0.83406 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.50 37.16 0.35 -1.78 16 2 C 0.08 1.25 2.98 -27.88 -0.08 1.17 16 3 H 0.11 1.72 7.16 -51.93 -0.37 1.35 16 4 O -0.34 -7.07 8.68 -47.47 -0.41 -7.48 16 5 C 0.51 12.04 7.82 34.41 0.27 12.31 16 6 O -0.51 -12.73 12.85 -19.29 -0.25 -12.97 16 7 C -0.25 -6.30 5.92 -104.39 -0.62 -6.92 16 8 C -0.03 -0.80 9.60 -39.20 -0.38 -1.17 16 9 C -0.25 -5.44 10.03 -39.37 -0.39 -5.84 16 10 C -0.09 -2.00 10.01 -39.59 -0.40 -2.40 16 11 C -0.15 -3.75 8.62 -38.88 -0.34 -4.09 16 12 C 0.15 3.96 5.51 -106.54 -0.59 3.37 16 13 C -0.42 -11.10 7.68 -37.82 -0.29 -11.39 16 14 H 0.10 2.85 5.92 -52.48 -0.31 2.54 16 15 C 0.07 1.74 5.25 -17.30 -0.09 1.65 16 16 N -0.78 -19.71 11.14 55.57 0.62 -19.09 16 17 Si 0.92 18.88 29.57 -169.99 -5.03 13.85 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C 0.51 8.12 7.14 -10.98 -0.08 8.04 16 22 O -0.44 -8.63 14.71 -14.04 -0.21 -8.84 16 23 N -0.64 -8.07 5.36 -13.07 -0.07 -8.14 16 24 C 0.54 7.24 8.38 -322.27 -2.70 4.54 16 25 N -0.50 -7.21 7.87 -13.83 -0.11 -7.32 16 26 C 0.18 1.76 11.30 -17.22 -0.19 1.57 16 27 C -0.27 -1.89 10.16 -39.31 -0.40 -2.29 16 28 C 0.18 1.39 11.30 -17.22 -0.19 1.19 16 29 N -0.55 -6.12 10.46 -13.83 -0.14 -6.26 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 33 H 0.11 2.27 7.61 -52.49 -0.40 1.87 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 3.03 6.59 -52.49 -0.35 2.69 16 37 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 38 H 0.42 3.93 8.60 -40.82 -0.35 3.58 16 39 H 0.17 1.19 8.06 -52.48 -0.42 0.76 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -33.66 361.87 -10.55 -44.20 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.28 Total: 8.63 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -6.12 Total: -2.05 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.30 Total: -40.80 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.87 Total: -29.29 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.66 -10.55 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822655917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.349 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds