Wall clock time and date at job start Tue Mar 31 2020 23:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47547 * 2 1 4 4 O 1.45207 * 109.47128 * 240.00400 * 2 1 3 5 5 C 1.34802 * 116.99677 * 89.99975 * 4 2 1 6 6 O 1.21527 * 120.00715 * 0.02562 * 5 4 2 7 7 C 1.47288 * 119.99832 * 180.02562 * 5 4 2 8 8 C 1.39290 * 120.28982 * 356.67710 * 7 5 4 9 9 C 1.38196 * 120.08917 * 180.27927 * 8 7 5 10 10 C 1.38842 * 120.68150 * 359.71816 * 9 8 7 11 11 C 1.37598 * 120.58349 * 0.02562 * 10 9 8 12 12 C 1.40702 * 119.88464 * 0.02562 * 11 10 9 13 13 C 1.40863 * 120.33040 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99808 * 215.84015 * 13 12 11 15 15 C 1.40291 * 120.00073 * 35.84141 * 13 12 11 16 16 N 1.30617 * 120.00193 * 190.86539 * 15 13 12 17 17 Si 1.86807 * 120.00014 * 10.87229 * 15 13 12 18 18 H 1.48498 * 109.46846 * 267.47706 * 17 15 13 19 19 H 1.48496 * 109.46840 * 27.47448 * 17 15 13 20 20 H 1.48500 * 109.47051 * 147.47464 * 17 15 13 21 21 C 1.50702 * 109.47357 * 120.00614 * 2 1 3 22 22 O 1.21266 * 120.00091 * 119.99623 * 21 2 1 23 23 N 1.34775 * 119.99441 * 299.99997 * 21 2 1 24 24 C 1.38940 * 119.99316 * 179.97438 * 23 21 2 25 25 N 1.32400 * 119.20749 * 359.72818 * 24 23 21 26 26 C 1.32276 * 120.75179 * 179.75621 * 25 24 23 27 27 C 1.38617 * 119.18308 * 0.51026 * 26 25 24 28 28 C 1.38614 * 118.53643 * 359.74687 * 27 26 25 29 29 N 1.32279 * 119.18386 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47448 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47043 * 299.99683 * 1 2 3 32 32 H 1.09008 * 109.47245 * 59.99345 * 1 2 3 33 33 H 1.08009 * 119.95719 * 359.97438 * 8 7 5 34 34 H 1.08007 * 119.66065 * 179.74490 * 9 8 7 35 35 H 1.08003 * 119.70684 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.05739 * 180.02562 * 11 10 9 37 37 H 0.97002 * 120.00122 * 179.97438 * 16 15 13 38 38 H 0.96992 * 120.00577 * 359.97438 * 23 21 2 39 39 H 1.08005 * 120.40887 * 180.25534 * 26 25 24 40 40 H 1.07994 * 120.73033 * 179.76659 * 27 26 25 41 41 H 1.08000 * 120.40598 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2179 0.0674 -2.2858 6 8 1.9977 1.2622 -2.2548 7 6 2.7076 -0.5592 -3.5255 8 6 3.0277 -1.9146 -3.5487 9 6 3.4923 -2.4970 -4.7126 10 6 3.6406 -1.7455 -5.8706 11 6 3.3277 -0.4056 -5.8805 12 6 2.8536 0.2123 -4.7087 13 6 2.5300 1.5832 -4.7084 14 1 2.7262 2.1841 -3.8327 15 6 1.9530 2.1680 -5.8456 16 7 1.8477 3.4672 -5.9298 17 14 1.3349 1.0886 -7.2393 18 1 2.4124 0.9153 -8.2464 19 1 0.9426 -0.2385 -6.7009 20 1 0.1585 1.7310 -7.8786 21 6 2.0323 -0.7105 1.2304 22 8 2.7294 -1.6965 1.1190 23 7 1.7067 -0.2501 2.4545 24 6 2.1694 -0.9055 3.5888 25 7 2.9247 -1.9840 3.4490 26 6 3.3857 -2.6288 4.5079 27 6 3.0602 -2.1685 5.7742 28 6 2.2631 -1.0397 5.8839 29 7 1.8395 -0.4399 4.7836 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 2.9173 -2.5102 -2.6545 34 1 3.7424 -3.5477 -4.7217 35 1 4.0046 -2.2168 -6.7716 36 1 3.4458 0.1708 -6.7862 37 1 1.4491 3.8716 -6.7163 38 1 1.1493 0.5387 2.5436 39 1 4.0048 -3.5056 4.3873 40 1 3.4198 -2.6779 6.6559 41 1 1.9914 -0.6548 6.8556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822655918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:12 Heat of formation + Delta-G solvation = -22.156082 kcal Electronic energy + Delta-G solvation = -28423.096464 eV Core-core repulsion = 24269.390265 eV Total energy + Delta-G solvation = -4153.706199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53591 -40.11135 -39.09370 -37.52251 -35.56655 -35.19417 -33.94857 -33.74705 -32.29838 -30.77361 -30.58125 -29.95282 -25.72607 -25.39490 -24.91155 -23.85446 -22.58181 -21.49685 -20.59536 -19.72981 -18.89712 -17.86582 -17.55657 -17.09587 -16.55816 -16.15200 -15.96332 -15.81405 -15.30622 -15.19416 -14.80773 -14.44420 -14.14592 -13.99643 -13.77045 -13.72590 -13.35368 -12.94415 -12.71451 -12.57230 -12.25241 -11.98676 -11.73186 -11.47386 -11.28483 -11.18188 -11.10300 -10.98576 -10.76876 -10.52913 -10.40255 -10.26814 -9.89847 -9.81873 -9.33913 -9.20719 -8.99424 -8.93910 -7.89267 -7.69818 -7.03838 -4.63128 0.64239 0.85793 1.91621 2.09895 2.44882 2.58370 3.02913 3.10646 3.23121 3.38056 3.63424 3.67091 3.85626 3.87689 4.16805 4.35902 4.46773 4.61262 4.85153 4.87776 4.91990 5.08485 5.29055 5.36001 5.44829 5.70784 5.72835 5.88098 5.95800 6.03238 6.11566 6.20538 6.32816 6.53106 6.67540 6.72054 6.80478 7.01294 7.05565 7.23450 7.37392 7.59821 7.68531 7.83989 7.95764 8.02285 8.32048 8.50124 8.70504 8.91473 9.92644 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.002578 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.641603 B =10857.192460 C =11785.298284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 H 0.114 0.886 4 O -0.339 6.339 5 C 0.503 3.497 6 O -0.504 6.504 7 C -0.239 4.239 8 C -0.017 4.017 9 C -0.256 4.256 10 C -0.058 4.058 11 C -0.227 4.227 12 C 0.119 3.881 13 C -0.401 4.401 14 H 0.124 0.876 15 C 0.079 3.921 16 N -0.786 5.786 17 Si 0.908 3.092 18 H -0.266 1.266 19 H -0.240 1.240 20 H -0.287 1.287 21 C 0.513 3.487 22 O -0.439 6.439 23 N -0.639 5.639 24 C 0.542 3.458 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.268 4.268 28 C 0.178 3.822 29 N -0.551 5.551 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.289 0.711 38 H 0.424 0.576 39 H 0.172 0.828 40 H 0.148 0.852 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -7.362 17.875 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.131 0.869 4 O -0.257 6.257 5 C 0.353 3.647 6 O -0.394 6.394 7 C -0.242 4.242 8 C -0.035 4.035 9 C -0.275 4.275 10 C -0.077 4.077 11 C -0.245 4.245 12 C 0.114 3.886 13 C -0.427 4.427 14 H 0.141 0.859 15 C -0.142 4.142 16 N -0.409 5.409 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.163 1.163 20 H -0.214 1.214 21 C 0.296 3.704 22 O -0.303 6.303 23 N -0.292 5.292 24 C 0.186 3.814 25 N -0.224 5.224 26 C 0.011 3.989 27 C -0.292 4.292 28 C 0.011 3.989 29 N -0.272 5.272 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.263 0.737 39 H 0.189 0.811 40 H 0.166 0.834 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.893 -6.953 16.721 18.208 hybrid contribution -0.265 -0.169 0.305 0.438 sum -2.157 -7.122 17.026 18.581 Atomic orbital electron populations 1.22177 0.92138 1.03804 1.04145 1.22035 0.95627 0.97661 0.82837 0.86884 1.86740 1.78575 1.41530 1.18885 1.21422 0.75302 0.85209 0.82748 1.90777 1.50037 1.15660 1.82883 1.18570 1.19828 0.93744 0.92025 1.21035 0.92285 0.93322 0.96853 1.20394 1.14217 0.98892 0.93980 1.20822 0.96268 0.93831 0.96742 1.21098 1.09470 0.95296 0.98668 1.17497 0.88789 0.92760 0.89541 1.20231 1.29171 0.92457 1.00838 0.85868 1.26414 0.93855 0.95279 0.98695 1.69556 1.30872 1.11546 1.28892 0.86366 0.78402 0.81927 0.79959 1.19192 1.16344 1.21437 1.20727 0.81006 0.85436 0.83191 1.90845 1.31769 1.22730 1.84973 1.43232 1.51882 1.31242 1.02817 1.19459 0.88872 0.87411 0.85618 1.68538 1.12074 1.07631 1.34138 1.23280 0.92109 0.96450 0.87077 1.22776 1.04877 1.01168 1.00375 1.22975 0.89514 0.90092 0.96295 1.67806 1.27060 1.34368 0.97959 0.91048 0.90826 0.89736 0.87081 0.88129 0.88278 0.87468 0.89998 0.73747 0.81127 0.83402 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.45 37.15 0.35 -1.76 16 2 C 0.08 1.24 2.99 -27.89 -0.08 1.16 16 3 H 0.11 1.77 7.16 -51.93 -0.37 1.40 16 4 O -0.34 -6.89 8.67 -47.46 -0.41 -7.30 16 5 C 0.50 11.73 7.83 34.41 0.27 12.00 16 6 O -0.50 -12.61 12.79 -19.28 -0.25 -12.86 16 7 C -0.24 -5.79 5.92 -104.39 -0.62 -6.41 16 8 C -0.02 -0.36 9.60 -39.21 -0.38 -0.74 16 9 C -0.26 -5.22 10.03 -39.37 -0.39 -5.62 16 10 C -0.06 -1.21 10.01 -39.59 -0.40 -1.60 16 11 C -0.23 -5.29 7.01 -38.88 -0.27 -5.56 16 12 C 0.12 3.02 5.04 -106.53 -0.54 2.49 16 13 C -0.40 -10.90 8.31 -37.82 -0.31 -11.22 16 14 H 0.12 3.67 5.96 -52.49 -0.31 3.35 16 15 C 0.08 2.04 5.47 -17.30 -0.09 1.95 16 16 N -0.79 -20.56 13.92 55.57 0.77 -19.78 16 17 Si 0.91 20.09 24.51 -169.99 -4.17 15.93 16 18 H -0.27 -5.60 6.74 56.52 0.38 -5.22 16 19 H -0.24 -5.47 6.75 56.52 0.38 -5.09 16 20 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 21 C 0.51 8.02 7.20 -10.99 -0.08 7.94 16 22 O -0.44 -8.51 14.70 -14.09 -0.21 -8.72 16 23 N -0.64 -7.98 5.29 -13.07 -0.07 -8.05 16 24 C 0.54 7.17 8.38 -322.25 -2.70 4.47 16 25 N -0.50 -7.12 7.87 -13.83 -0.11 -7.23 16 26 C 0.18 1.73 11.30 -17.22 -0.19 1.54 16 27 C -0.27 -1.86 10.17 -39.30 -0.40 -2.26 16 28 C 0.18 1.38 11.30 -17.22 -0.19 1.18 16 29 N -0.55 -6.06 10.46 -13.83 -0.14 -6.21 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.67 7.56 -51.93 -0.39 0.27 16 32 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 33 H 0.11 2.25 7.61 -52.48 -0.40 1.85 16 34 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.11 2.43 4.96 -52.49 -0.26 2.17 16 37 H 0.29 6.77 8.29 -40.82 -0.34 6.43 16 38 H 0.42 3.91 8.23 -40.82 -0.34 3.57 16 39 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 41 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -33.85 355.17 -9.47 -43.33 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.21 Total: 7.99 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -6.04 Total: -2.45 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.45 Total: -41.27 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.87 Total: -28.88 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.17 Total: 15.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.85 -9.47 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822655918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds