Wall clock time and date at job start Tue Mar 31 2020 23:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81409 * 109.46859 * 2 1 4 4 O 1.42088 * 110.54453 * 68.37170 * 3 2 1 5 5 O 1.42100 * 110.53933 * 291.61883 * 3 2 1 6 6 N 1.65599 * 104.44864 * 179.97438 * 3 2 1 7 7 C 1.46494 * 119.99780 * 269.99726 * 6 3 2 8 8 C 1.39920 * 120.00272 * 89.99896 * 6 3 2 9 9 C 1.38877 * 120.00666 * 155.00066 * 8 6 3 10 10 C 1.38074 * 119.99412 * 180.22929 * 9 8 6 11 11 C 1.38846 * 120.00508 * 359.49703 * 10 9 8 12 12 N 1.40193 * 119.99315 * 180.23351 * 11 10 9 13 13 C 1.34780 * 119.99333 * 213.55369 * 12 11 10 14 14 O 1.21587 * 120.00353 * 5.30836 * 13 12 11 15 15 N 1.34779 * 119.99797 * 185.31798 * 13 12 11 16 16 C 1.46500 * 120.00078 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46989 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00512 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99916 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00011 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00249 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46807 * 60.00224 * 21 19 17 23 23 H 1.48494 * 109.47338 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46992 * 300.00412 * 21 19 17 25 25 C 1.38843 * 120.00740 * 0.50178 * 11 10 9 26 26 C 1.38075 * 120.00626 * 359.74882 * 25 11 10 27 27 H 1.09007 * 109.47151 * 60.00570 * 1 2 3 28 28 H 1.09001 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47751 * 300.00669 * 1 2 3 30 30 H 1.08995 * 109.47734 * 239.99841 * 2 1 3 31 31 H 1.09001 * 109.47175 * 119.98997 * 2 1 3 32 32 H 1.08997 * 109.47686 * 269.99919 * 7 6 3 33 33 H 1.08999 * 109.47238 * 30.00096 * 7 6 3 34 34 H 1.09007 * 109.47481 * 149.99976 * 7 6 3 35 35 H 1.07994 * 120.00170 * 359.95046 * 9 8 6 36 36 H 1.08001 * 119.99706 * 179.74479 * 10 9 8 37 37 H 0.96995 * 120.00705 * 33.54696 * 12 11 10 38 38 H 0.97002 * 119.99673 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.46830 * 299.99456 * 16 15 13 40 40 H 1.08997 * 109.47047 * 59.99308 * 16 15 13 41 41 H 0.96999 * 119.99940 * 179.97438 * 20 19 17 42 42 H 1.07994 * 119.99681 * 179.72740 * 25 11 10 43 43 H 1.07995 * 120.00189 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7104 0.0000 4 8 1.8384 2.3439 1.2368 5 8 1.8385 2.3438 -1.2371 6 7 3.7842 1.5655 0.0007 7 6 4.5133 1.5016 1.2697 8 6 4.4817 1.5040 -1.2107 9 6 5.8125 1.8973 -1.2666 10 6 6.4991 1.8411 -2.4632 11 6 5.8623 1.3815 -3.6082 12 7 6.5612 1.3199 -4.8220 13 6 5.9156 1.5452 -5.9834 14 8 4.7515 1.8962 -5.9738 15 7 6.5603 1.3813 -7.1556 16 6 5.8584 1.6257 -8.4181 17 6 6.7957 1.3737 -9.5708 18 1 7.8125 1.0622 -9.3821 19 6 6.3550 1.5397 -10.8667 20 7 5.1168 1.9185 -11.0967 21 14 7.5171 1.2280 -12.2957 22 1 7.9862 -0.1803 -12.2540 23 1 6.8053 1.4744 -13.5754 24 1 8.6834 2.1415 -12.1935 25 6 4.5319 0.9882 -3.5525 26 6 3.8434 1.0492 -2.3573 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 4.7841 2.5094 1.5844 33 1 3.8812 1.0415 2.0292 34 1 5.4173 0.9064 1.1400 35 1 6.3088 2.2514 -0.3753 36 1 7.5328 2.1508 -2.5076 37 1 7.5093 1.1152 -4.8259 38 1 7.4891 1.1015 -7.1632 39 1 5.0016 0.9560 -8.4929 40 1 5.5151 2.6597 -8.4486 41 1 4.8068 2.0357 -12.0083 42 1 4.0356 0.6350 -4.4442 43 1 2.8084 0.7437 -2.3141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825549253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:16 Heat of formation + Delta-G solvation = -61.676097 kcal Electronic energy + Delta-G solvation = -27029.023960 eV Core-core repulsion = 23009.047996 eV Total energy + Delta-G solvation = -4019.975964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32540 -38.98267 -37.53313 -36.46162 -36.21737 -34.23471 -33.78024 -33.60477 -32.30060 -31.05900 -29.08490 -27.22893 -26.27907 -24.56007 -23.09074 -22.86729 -21.81033 -20.19271 -19.45448 -18.36317 -18.18297 -17.70845 -17.03890 -16.69393 -16.02795 -15.90199 -15.18370 -14.92914 -14.70952 -14.63955 -14.40392 -14.27118 -14.00926 -13.60257 -13.46265 -13.19079 -13.13971 -12.95222 -12.75708 -12.73998 -12.40226 -12.27797 -12.03823 -11.99824 -11.97958 -11.92915 -11.35188 -11.01056 -10.98842 -10.90246 -10.55061 -10.32289 -9.60629 -9.46883 -9.41909 -8.90694 -8.75755 -7.99224 -7.50579 -6.17365 -4.24638 -0.22640 1.32486 1.42392 2.13363 3.15885 3.24655 3.30086 3.31990 3.39607 3.61902 3.70151 3.98533 4.09261 4.27886 4.30267 4.31010 4.70979 4.77766 4.85878 4.94614 5.02015 5.09018 5.14788 5.18688 5.22218 5.33452 5.34096 5.44379 5.48113 5.70117 5.81973 5.98528 6.36349 6.42301 6.53802 6.65032 7.04059 7.18284 7.40084 7.49097 7.52137 7.82128 7.98318 8.68165 8.83259 9.19693 9.42559 10.92724 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002120 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.646567 B =13202.624787 C =14017.027471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.632 4.632 3 S 2.597 3.403 4 O -0.949 6.949 5 O -0.930 6.930 6 N -0.942 5.942 7 C 0.085 3.915 8 C 0.137 3.863 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.164 3.836 12 N -0.696 5.696 13 C 0.689 3.311 14 O -0.580 6.580 15 N -0.722 5.722 16 C 0.266 3.734 17 C -0.544 4.544 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.085 4.085 26 C -0.134 4.134 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.403 0.597 38 H 0.388 0.612 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.267 0.733 42 H 0.146 0.854 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -6.330 27.402 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.691 3.309 4 O -0.939 6.939 5 O -0.920 6.920 6 N -0.769 5.769 7 C -0.059 4.059 8 C 0.042 3.958 9 C -0.147 4.147 10 C -0.149 4.149 11 C 0.067 3.933 12 N -0.344 5.344 13 C 0.389 3.611 14 O -0.457 6.457 15 N -0.374 5.374 16 C 0.145 3.855 17 C -0.583 4.583 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.106 4.106 26 C -0.156 4.156 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.238 0.762 38 H 0.221 0.779 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.164 0.836 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.314 -5.154 27.183 27.764 hybrid contribution 1.681 -1.029 -0.822 2.136 sum -0.633 -6.183 26.361 27.084 Atomic orbital electron populations 1.21529 0.90082 1.05364 1.03705 1.30576 1.07576 1.25988 1.12042 1.05700 0.72702 0.77832 0.74648 1.93600 1.82631 1.72351 1.45341 1.93704 1.82206 1.72167 1.43955 1.55443 1.25312 1.85889 1.10220 1.21657 0.98233 1.03277 0.82765 1.17373 0.93001 1.01177 0.84273 1.20504 0.93039 1.03015 0.98121 1.20692 1.00750 1.01796 0.91662 1.17527 0.92552 0.98301 0.84931 1.42863 1.12620 1.75017 1.03904 1.16189 0.85413 0.79124 0.80400 1.90918 1.15474 1.53308 1.86029 1.45781 1.15373 1.70733 1.05494 1.19049 0.92502 0.97231 0.76711 1.21164 0.97968 1.48470 0.90688 0.91942 1.24945 0.95368 0.94737 0.98935 1.69966 1.15562 1.45318 1.21310 0.86457 0.80524 0.78759 0.81041 1.20088 1.21061 1.20075 1.21062 0.93476 0.98295 0.97745 1.20805 0.99844 1.02945 0.91965 0.90561 0.89679 0.90947 0.84485 0.84949 0.91433 0.90495 0.90000 0.85378 0.85320 0.76236 0.77935 0.95471 0.95489 0.92331 0.83613 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.92 37.16 0.37 -0.53 16 2 C -0.63 -3.97 6.76 37.16 0.25 -3.72 16 3 S 2.60 26.65 4.74 -107.50 -0.51 26.14 16 4 O -0.95 -11.51 17.08 -57.54 -0.98 -12.49 16 5 O -0.93 -13.45 15.17 -57.54 -0.87 -14.32 16 6 N -0.94 -8.96 3.33 -65.35 -0.22 -9.18 16 7 C 0.09 0.53 9.20 59.84 0.55 1.08 16 8 C 0.14 1.61 6.05 -83.69 -0.51 1.11 16 9 C -0.12 -1.32 9.13 -39.41 -0.36 -1.68 16 10 C -0.13 -1.46 9.96 -39.42 -0.39 -1.85 16 11 C 0.16 2.39 6.28 -83.58 -0.53 1.86 16 12 N -0.70 -10.34 5.36 -14.17 -0.08 -10.42 16 13 C 0.69 13.88 8.30 -86.91 -0.72 13.16 16 14 O -0.58 -14.15 14.03 5.29 0.07 -14.07 16 15 N -0.72 -14.94 5.55 -66.41 -0.37 -15.31 16 16 C 0.27 6.98 5.43 -5.19 -0.03 6.96 16 17 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 21 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.08 -1.34 8.65 -39.42 -0.34 -1.68 16 26 C -0.13 -1.82 8.42 -39.40 -0.33 -2.15 16 27 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.14 0.76 7.18 -51.93 -0.37 0.38 16 31 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 34 H 0.08 0.36 7.47 -51.93 -0.39 -0.03 16 35 H 0.13 0.99 7.13 -52.49 -0.37 0.62 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.40 4.42 8.84 -40.82 -0.36 4.06 16 38 H 0.39 6.71 8.34 -40.82 -0.34 6.37 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.15 2.62 6.41 -52.49 -0.34 2.29 16 43 H 0.12 1.50 5.13 -52.49 -0.27 1.23 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -37.53 371.47 -9.85 -47.38 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.76 Total: 6.91 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.45 Total: -0.67 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.07 Total: -60.10 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.78 Total: -40.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 26.65 SS G_CDS: -0.51 Total: 26.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.53 -9.85 -47.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825549253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.295 kcal (2) G-P(sol) polarization free energy of solvation -37.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds