Wall clock time and date at job start Tue Mar 31 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 O 1.45202 * 109.47088 * 239.99621 * 2 1 3 13 13 C 1.34768 * 116.99806 * 90.00293 * 12 2 1 14 14 O 1.21518 * 119.99719 * 359.97438 * 13 12 2 15 15 C 1.47376 * 119.99960 * 180.02562 * 13 12 2 16 16 C 1.39853 * 120.06288 * 359.72232 * 15 13 12 17 17 C 1.37803 * 119.93467 * 179.72071 * 16 15 13 18 18 F 1.35104 * 119.96690 * 180.30045 * 17 16 15 19 19 C 1.39325 * 120.06538 * 0.57943 * 17 16 15 20 20 N 1.39304 * 119.93495 * 179.69620 * 19 17 16 21 21 C 1.47014 * 110.99901 * 63.61744 * 20 19 17 22 22 C 1.53099 * 109.25793 * 177.60494 * 21 20 19 23 23 O 1.43011 * 109.26214 * 56.84365 * 22 21 20 24 24 C 1.43013 * 113.73929 * 301.33392 * 23 22 21 25 25 C 1.47008 * 111.00277 * 299.97565 * 20 19 17 26 26 C 1.39314 * 120.12550 * 359.67546 * 19 17 16 27 27 F 1.35095 * 119.97208 * 180.02562 * 26 19 17 28 28 C 1.37809 * 120.06236 * 0.04376 * 26 19 17 29 29 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 30 30 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 31 31 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.03188 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.50691 * 297.53083 * 21 20 19 35 35 H 1.08997 * 109.51130 * 57.67045 * 21 20 19 36 36 H 1.09003 * 109.50535 * 296.91439 * 22 21 20 37 37 H 1.08997 * 109.54678 * 176.80110 * 22 21 20 38 38 H 1.09000 * 109.50579 * 298.73192 * 24 23 22 39 39 H 1.08997 * 109.54749 * 178.62355 * 24 23 22 40 40 H 1.08999 * 109.50866 * 302.32896 * 25 20 19 41 41 H 1.09003 * 109.50236 * 62.42021 * 25 20 19 42 42 H 1.08002 * 120.03245 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0669 -2.2855 14 8 1.9970 1.2614 -2.2548 15 6 2.7080 -0.5602 -3.5259 16 6 2.9673 -1.9341 -3.5612 17 6 3.4200 -2.5187 -4.7241 18 9 3.6649 -3.8469 -4.7608 19 6 3.6309 -1.7406 -5.8604 20 7 4.0945 -2.3333 -7.0327 21 6 3.1210 -3.3045 -7.5527 22 6 3.6423 -3.8864 -8.8693 23 8 4.9278 -4.4732 -8.6496 24 6 5.9008 -3.5552 -8.1437 25 6 5.4024 -2.9699 -6.8196 26 6 3.3785 -0.3709 -5.8266 27 9 3.5836 0.3806 -6.9304 28 6 2.9202 0.2182 -4.6681 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 0.7088 1.1615 3.4843 33 1 2.8091 -2.5369 -2.6792 34 1 2.9855 -4.1076 -6.8283 35 1 2.1674 -2.8062 -7.7273 36 1 3.7269 -3.0915 -9.6104 37 1 2.9514 -4.6484 -9.2302 38 1 6.0511 -2.7507 -8.8636 39 1 6.8435 -4.0770 -7.9790 40 1 6.1142 -2.2273 -6.4591 41 1 5.3035 -3.7671 -6.0829 42 1 2.7251 1.2802 -4.6423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:12 Heat of formation + Delta-G solvation = -178.232403 kcal Electronic energy + Delta-G solvation = -29815.459292 eV Core-core repulsion = 25204.295929 eV Total energy + Delta-G solvation = -4611.163362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.43472 -49.09136 -40.48122 -39.83050 -38.38363 -36.18537 -35.67182 -33.36993 -31.62474 -31.00405 -30.63295 -29.57624 -27.25022 -25.40608 -24.46576 -24.07733 -23.17275 -21.82841 -20.94138 -20.14181 -18.44977 -17.76823 -17.67092 -16.79674 -16.74420 -16.55230 -16.04245 -15.76710 -15.76082 -15.69041 -15.45803 -15.29899 -15.23756 -15.11107 -14.68540 -14.56082 -14.19750 -13.29555 -13.01895 -12.87270 -12.67283 -12.47289 -12.31042 -12.10865 -11.98732 -11.82168 -11.68423 -11.31223 -11.13476 -11.03418 -10.93015 -10.48840 -10.36463 -10.14971 -10.02693 -9.68917 -9.17520 -9.07449 -9.04387 -9.01848 -8.56869 -6.25956 -4.33642 0.18404 0.70303 2.47555 3.01356 3.14538 3.22032 3.26302 3.30481 3.47032 3.48183 3.58064 4.07215 4.25350 4.37065 4.45264 4.59620 4.74677 4.76406 4.79531 4.85950 4.92108 5.05006 5.07594 5.14451 5.23344 5.38452 5.41459 5.48823 5.52035 5.60466 5.75836 5.97363 6.18700 6.25257 6.51738 6.70892 6.72639 6.78757 6.79666 6.98530 7.47683 7.61646 7.79436 8.02625 8.41094 8.75009 9.31974 10.81410 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.002563 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.500005 B =10923.573679 C =11735.635651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.050 0.950 4 C -0.525 4.525 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.274 1.274 12 O -0.347 6.347 13 C 0.497 3.503 14 O -0.504 6.504 15 C -0.052 4.052 16 C -0.099 4.099 17 C 0.086 3.914 18 F -0.124 7.124 19 C 0.038 3.962 20 N -0.492 5.492 21 C 0.012 3.988 22 C 0.067 3.933 23 O -0.383 6.383 24 C 0.067 3.933 25 C 0.009 3.991 26 C 0.144 3.856 27 F -0.115 7.115 28 C -0.102 4.102 29 H 0.101 0.899 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 -7.574 -20.989 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.199 1.199 12 O -0.263 6.263 13 C 0.340 3.660 14 O -0.394 6.394 15 C -0.054 4.054 16 C -0.118 4.118 17 C 0.065 3.935 18 F -0.103 7.103 19 C -0.059 4.059 20 N -0.214 5.214 21 C -0.114 4.114 22 C -0.010 4.010 23 O -0.302 6.302 24 C -0.010 4.010 25 C -0.117 4.117 26 C 0.124 3.876 27 F -0.093 7.093 28 C -0.121 4.121 29 H 0.120 0.880 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.181 0.819 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.083 -6.973 -21.234 23.163 hybrid contribution 0.078 -0.640 1.416 1.556 sum 6.162 -7.613 -19.818 22.106 Atomic orbital electron populations 1.22186 0.97291 1.00309 1.01606 1.20748 0.91541 0.94020 0.77210 0.93262 1.20959 1.32871 1.13667 0.88745 0.91253 1.24884 0.94840 0.95070 0.99085 1.69883 1.35797 1.22411 1.24454 0.86305 0.79245 0.79534 0.80907 1.20976 1.19888 1.19934 1.86558 1.75560 1.43134 1.21027 1.20582 0.75573 0.85303 0.84545 1.90819 1.48123 1.15888 1.84599 1.19049 1.00942 0.92647 0.92722 1.21578 0.97292 0.94968 0.97998 1.17948 1.02606 0.78204 0.94780 1.91496 1.91823 1.30183 1.96783 1.18814 1.04398 0.92601 0.90096 1.59544 1.03651 1.32947 1.25249 1.22997 0.95746 0.94556 0.98086 1.22654 0.84994 0.98290 0.95046 1.88002 1.20411 1.36566 1.85189 1.22651 0.91830 0.93140 0.93337 1.23040 0.90103 0.99208 0.99344 1.16817 1.00505 0.86670 0.83629 1.91548 1.92264 1.74951 1.50576 1.21285 0.98468 1.02459 0.89902 0.88047 0.96378 0.94275 0.92216 0.81876 0.92144 0.89088 0.91956 0.87945 0.91975 0.87938 0.89085 0.91877 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.33 37.16 0.35 -3.47 16 2 C 0.22 5.59 2.56 -27.89 -0.07 5.52 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.22 8.90 -34.44 -0.31 -14.53 16 5 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 O -0.35 -7.77 9.10 -40.68 -0.37 -8.14 16 13 C 0.50 9.87 7.86 34.45 0.27 10.14 16 14 O -0.50 -11.21 15.59 -19.28 -0.30 -11.51 16 15 C -0.05 -0.79 5.87 -104.97 -0.62 -1.41 16 16 C -0.10 -1.33 9.58 -39.14 -0.37 -1.71 16 17 C 0.09 1.05 6.68 -39.34 -0.26 0.79 16 18 F -0.12 -1.51 13.37 2.25 0.03 -1.48 16 19 C 0.04 0.44 4.74 -83.66 -0.40 0.04 16 20 N -0.49 -5.17 4.50 -170.67 -0.77 -5.94 16 21 C 0.01 0.11 5.33 -3.71 -0.02 0.09 16 22 C 0.07 0.53 7.01 37.21 0.26 0.79 16 23 O -0.38 -3.72 10.83 -35.23 -0.38 -4.10 16 24 C 0.07 0.54 7.01 37.21 0.26 0.80 16 25 C 0.01 0.09 5.29 -3.71 -0.02 0.07 16 26 C 0.14 1.75 7.30 -39.34 -0.29 1.46 16 27 F -0.12 -1.41 17.07 2.25 0.04 -1.37 16 28 C -0.10 -1.34 9.56 -39.14 -0.37 -1.71 16 29 H 0.10 2.65 6.07 -51.93 -0.32 2.34 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.16 2.21 7.60 -52.49 -0.40 1.81 16 34 H 0.06 0.61 6.38 -51.93 -0.33 0.28 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.65 6.11 -51.93 -0.32 0.33 16 42 H 0.16 2.06 7.64 -52.49 -0.40 1.66 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -29.61 357.16 -7.51 -37.12 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.06 Total: -0.06 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.68 Total: -1.49 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: -0.14 Total: -29.88 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -1.05 Total: -23.76 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.61 -7.51 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.117 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds