Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 O 1.45202 * 109.47088 * 239.99621 * 2 1 3 13 13 C 1.34768 * 116.99806 * 90.00293 * 12 2 1 14 14 O 1.21518 * 119.99719 * 359.97438 * 13 12 2 15 15 C 1.47376 * 119.99960 * 180.02562 * 13 12 2 16 16 C 1.39853 * 120.06288 * 359.72232 * 15 13 12 17 17 C 1.37803 * 119.93467 * 179.72071 * 16 15 13 18 18 F 1.35104 * 119.96690 * 180.30045 * 17 16 15 19 19 C 1.39325 * 120.06538 * 0.57943 * 17 16 15 20 20 N 1.39304 * 119.93495 * 179.69620 * 19 17 16 21 21 C 1.47014 * 110.99901 * 63.61744 * 20 19 17 22 22 C 1.53099 * 109.25793 * 177.60494 * 21 20 19 23 23 O 1.43011 * 109.26214 * 56.84365 * 22 21 20 24 24 C 1.43013 * 113.73929 * 301.33392 * 23 22 21 25 25 C 1.47008 * 111.00277 * 299.97565 * 20 19 17 26 26 C 1.39314 * 120.12550 * 359.67546 * 19 17 16 27 27 F 1.35095 * 119.97208 * 180.02562 * 26 19 17 28 28 C 1.37809 * 120.06236 * 0.04376 * 26 19 17 29 29 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 30 30 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 31 31 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 33 33 H 1.08002 * 120.03188 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.50691 * 297.53083 * 21 20 19 35 35 H 1.08997 * 109.51130 * 57.67045 * 21 20 19 36 36 H 1.09003 * 109.50535 * 296.91439 * 22 21 20 37 37 H 1.08997 * 109.54678 * 176.80110 * 22 21 20 38 38 H 1.09000 * 109.50579 * 298.73192 * 24 23 22 39 39 H 1.08997 * 109.54749 * 178.62355 * 24 23 22 40 40 H 1.08999 * 109.50866 * 302.32896 * 25 20 19 41 41 H 1.09003 * 109.50236 * 62.42021 * 25 20 19 42 42 H 1.08002 * 120.03245 * 179.97438 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0669 -2.2855 14 8 1.9970 1.2614 -2.2548 15 6 2.7080 -0.5602 -3.5259 16 6 2.9673 -1.9341 -3.5612 17 6 3.4200 -2.5187 -4.7241 18 9 3.6649 -3.8469 -4.7608 19 6 3.6309 -1.7406 -5.8604 20 7 4.0945 -2.3333 -7.0327 21 6 3.1210 -3.3045 -7.5527 22 6 3.6423 -3.8864 -8.8693 23 8 4.9278 -4.4732 -8.6496 24 6 5.9008 -3.5552 -8.1437 25 6 5.4024 -2.9699 -6.8196 26 6 3.3785 -0.3709 -5.8266 27 9 3.5836 0.3806 -6.9304 28 6 2.9202 0.2182 -4.6681 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 0.7088 1.1615 3.4843 33 1 2.8091 -2.5369 -2.6792 34 1 2.9855 -4.1076 -6.8283 35 1 2.1674 -2.8062 -7.7273 36 1 3.7269 -3.0915 -9.6104 37 1 2.9514 -4.6484 -9.2302 38 1 6.0511 -2.7507 -8.8636 39 1 6.8435 -4.0770 -7.9790 40 1 6.1142 -2.2273 -6.4591 41 1 5.3035 -3.7671 -6.0829 42 1 2.7251 1.2802 -4.6423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = -194.911746 kcal Electronic energy + Delta-G solvation = -29816.182562 eV Core-core repulsion = 25204.295929 eV Total energy + Delta-G solvation = -4611.886633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.43563 -50.09568 -41.69189 -41.00595 -39.48352 -37.70864 -36.79748 -35.36224 -32.28294 -32.27712 -31.70055 -31.33714 -28.19138 -27.45983 -25.30609 -25.14276 -24.23078 -23.37644 -21.82985 -21.65595 -19.81094 -18.93361 -18.67882 -18.44597 -17.96740 -17.63422 -17.25659 -17.00355 -16.81118 -16.70710 -16.66792 -16.52513 -16.29035 -16.06297 -16.02909 -15.51641 -15.07677 -14.90747 -14.40832 -14.16998 -13.90228 -13.75661 -13.51293 -13.34681 -13.26059 -13.06583 -12.97810 -12.82168 -12.64052 -12.40487 -12.37015 -12.19215 -11.75533 -11.65680 -11.62318 -11.03801 -10.83987 -10.61045 -10.23292 -10.11556 -9.87452 -8.29828 -6.46661 -0.95580 -0.34551 1.15220 1.41940 1.45841 1.52862 1.67735 2.15530 2.21105 2.36992 2.50343 2.88116 2.99207 3.01448 3.39090 3.50624 3.68028 3.78796 3.83333 4.04989 4.09619 4.15974 4.18180 4.27019 4.40357 4.46399 4.50966 4.61319 4.62953 4.73826 4.77176 4.79300 4.81856 4.85332 4.93982 5.09974 5.18967 5.45706 5.49177 5.59483 5.78525 5.84626 6.00459 6.10881 6.54693 6.78844 7.24281 8.77626 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.002563 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.500005 B =10923.573679 C =11735.635651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.219 3.781 3 H 0.013 0.987 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.981 3.019 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.269 1.269 12 O -0.351 6.351 13 C 0.497 3.503 14 O -0.534 6.534 15 C -0.067 4.067 16 C -0.090 4.090 17 C 0.091 3.909 18 F -0.121 7.121 19 C 0.057 3.943 20 N -0.498 5.498 21 C 0.010 3.990 22 C 0.068 3.932 23 O -0.400 6.400 24 C 0.069 3.931 25 C 0.007 3.993 26 C 0.149 3.851 27 F -0.112 7.112 28 C -0.089 4.089 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.271 0.729 33 H 0.161 0.839 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -9.066 -22.226 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.166 3.834 3 H 0.031 0.969 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.805 3.195 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.193 1.193 12 O -0.267 6.267 13 C 0.342 3.658 14 O -0.426 6.426 15 C -0.069 4.069 16 C -0.110 4.110 17 C 0.069 3.931 18 F -0.100 7.100 19 C -0.040 4.040 20 N -0.220 5.220 21 C -0.116 4.116 22 C -0.009 4.009 23 O -0.319 6.319 24 C -0.008 4.008 25 C -0.119 4.119 26 C 0.129 3.871 27 F -0.090 7.090 28 C -0.108 4.108 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.179 0.821 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.955 -8.477 -22.504 25.033 hybrid contribution -0.153 -0.176 1.646 1.662 sum 6.803 -8.653 -20.858 23.584 Atomic orbital electron populations 1.22015 0.96517 1.00624 1.01071 1.20448 0.92154 0.92284 0.78507 0.96895 1.21255 1.33617 1.14073 0.89763 0.91190 1.25799 0.94691 0.95644 1.02069 1.70003 1.36420 1.23534 1.25357 0.85250 0.78796 0.78643 0.76851 1.20335 1.18846 1.19344 1.86533 1.75994 1.43057 1.21101 1.21270 0.74546 0.85038 0.84926 1.90797 1.49593 1.17173 1.85053 1.18611 1.03746 0.93366 0.91157 1.21486 0.96847 0.94187 0.98498 1.17812 1.02524 0.78332 0.94415 1.91513 1.91775 1.29945 1.96742 1.18915 1.02321 0.92388 0.90332 1.59685 1.04455 1.33681 1.24189 1.23089 0.95899 0.94022 0.98543 1.22774 0.84757 0.99035 0.94291 1.87986 1.21170 1.37516 1.85239 1.22763 0.92144 0.93357 0.92544 1.23127 0.89574 0.99055 1.00122 1.16641 1.00453 0.86758 0.83275 1.91562 1.92220 1.74938 1.50278 1.21237 0.97630 1.02446 0.89535 0.89918 0.95492 0.93385 0.91929 0.82101 0.93031 0.88338 0.91276 0.86088 0.91294 0.86144 0.88455 0.92795 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.22 9.33 71.98 0.67 -6.55 16 2 C 0.22 11.65 2.56 29.85 0.08 11.72 16 3 H 0.01 0.79 7.16 -2.39 -0.02 0.77 16 4 C -0.55 -30.26 8.90 25.60 0.23 -30.03 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -51.43 11.32 21.45 0.24 -51.19 16 8 Si 0.98 41.86 29.54 68.60 2.03 43.89 16 9 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 12 O -0.35 -16.12 9.10 -56.78 -0.52 -16.63 16 13 C 0.50 20.22 7.86 70.23 0.55 20.77 16 14 O -0.53 -24.58 15.59 19.78 0.31 -24.28 16 15 C -0.07 -2.03 5.87 -20.09 -0.12 -2.15 16 16 C -0.09 -2.38 9.58 22.56 0.22 -2.17 16 17 C 0.09 2.09 6.68 22.43 0.15 2.24 16 18 F -0.12 -2.77 13.37 44.97 0.60 -2.17 16 19 C 0.06 1.23 4.74 38.48 0.18 1.42 16 20 N -0.50 -9.36 4.50 -693.86 -3.12 -12.49 16 21 C 0.01 0.17 5.33 86.31 0.46 0.63 16 22 C 0.07 0.91 7.01 72.02 0.50 1.42 16 23 O -0.40 -6.84 10.83 -148.98 -1.61 -8.45 16 24 C 0.07 0.93 7.01 72.02 0.50 1.44 16 25 C 0.01 0.12 5.29 86.32 0.46 0.58 16 26 C 0.15 3.37 7.30 22.43 0.16 3.53 16 27 F -0.11 -2.51 17.07 44.97 0.77 -1.74 16 28 C -0.09 -2.27 9.56 22.56 0.22 -2.06 16 29 H 0.08 4.45 6.07 -2.39 -0.01 4.43 16 30 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 32 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 33 H 0.16 4.31 7.60 -2.91 -0.02 4.29 16 34 H 0.05 0.95 6.38 -2.39 -0.02 0.93 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.01 6.11 -2.39 -0.01 0.99 16 42 H 0.16 4.11 7.64 -2.91 -0.02 4.09 16 Total: -1.00 -63.64 357.16 4.47 -59.16 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.07 Total: 11.68 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 4.71 Total: 2.21 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -2.88 Total: -63.68 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.82 Total: -49.36 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 1.37 Total: -3.91 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -63.64 4.47 -59.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.747 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds