Wall clock time and date at job start Tue Mar 31 2020 23:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47119 * 2 1 4 4 S 1.65601 * 120.00371 * 164.99792 * 3 2 1 5 5 O 1.42102 * 104.27675 * 308.93170 * 4 3 2 6 6 O 1.42097 * 104.28037 * 181.07048 * 4 3 2 7 7 C 1.81402 * 104.44685 * 65.00046 * 4 3 2 8 8 C 1.52995 * 109.47082 * 180.02562 * 7 4 3 9 9 N 1.46500 * 109.47329 * 179.97438 * 8 7 4 10 10 C 1.34773 * 120.00345 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99727 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00256 * 180.02562 * 10 9 8 13 13 C 1.39953 * 119.99927 * 184.31484 * 12 10 9 14 14 C 1.39286 * 119.94529 * 144.78959 * 13 12 10 15 15 C 1.38492 * 120.43064 * 179.97438 * 14 13 12 16 16 C 1.37689 * 120.31596 * 0.29407 * 15 14 13 17 17 C 1.40741 * 119.88547 * 359.48005 * 16 15 14 18 18 C 1.41404 * 120.20892 * 180.26751 * 17 16 15 19 19 H 1.07995 * 119.99930 * 214.94201 * 18 17 16 20 20 C 1.39934 * 120.00185 * 34.95397 * 18 17 16 21 21 N 1.30831 * 119.99834 * 355.53859 * 20 18 17 22 22 Si 1.86792 * 120.00114 * 175.54459 * 20 18 17 23 23 H 1.48495 * 109.47461 * 59.99745 * 22 20 18 24 24 H 1.48508 * 109.47070 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47234 * 299.99315 * 22 20 18 26 26 C 1.38233 * 119.94659 * 324.80426 * 13 12 10 27 27 H 1.08994 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46836 * 299.99795 * 1 2 3 29 29 H 1.08997 * 109.46914 * 59.99835 * 1 2 3 30 30 H 1.08998 * 109.47577 * 240.00182 * 2 1 3 31 31 H 1.09003 * 109.47091 * 119.99733 * 2 1 3 32 32 H 0.97001 * 120.00260 * 345.00415 * 3 2 1 33 33 H 1.08997 * 109.46792 * 60.00079 * 7 4 3 34 34 H 1.09005 * 109.46998 * 300.00461 * 7 4 3 35 35 H 1.09005 * 109.47064 * 60.00584 * 8 7 4 36 36 H 1.08997 * 109.47661 * 300.00403 * 8 7 4 37 37 H 0.97003 * 120.00003 * 0.02562 * 9 8 7 38 38 H 0.97003 * 119.99360 * 4.31093 * 12 10 9 39 39 H 1.07995 * 119.78977 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.84241 * 180.02562 * 15 14 13 41 41 H 1.08002 * 120.05321 * 179.72210 * 16 15 14 42 42 H 0.96998 * 119.99948 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.16305 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7002 0.3712 5 8 3.8180 1.0143 1.5965 6 8 3.6994 3.1158 0.2964 7 6 4.5451 0.9244 -0.9690 8 6 6.0401 1.1516 -0.7370 9 7 6.8031 0.5245 -1.8191 10 6 8.1489 0.5970 -1.8246 11 8 8.7298 1.1824 -0.9312 12 7 8.8508 0.0205 -2.8203 13 6 10.2498 0.0173 -2.7795 14 6 10.9573 -1.0757 -3.2745 15 6 12.3417 -1.0892 -3.2396 16 6 13.0340 -0.0238 -2.7090 17 6 12.3327 1.0895 -2.2096 18 6 13.0370 2.1898 -1.6684 19 1 12.6251 2.7366 -0.8332 20 6 14.2676 2.5703 -2.2152 21 7 14.8083 1.8564 -3.1690 22 14 15.1384 4.0972 -1.5832 23 1 15.4227 3.9409 -0.1341 24 1 16.4144 4.2802 -2.3206 25 1 14.2708 5.2840 -1.7922 26 6 10.9271 1.0986 -2.2477 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4150 2.1090 -0.2174 33 1 4.2536 1.3662 -1.9219 34 1 4.3389 -0.1459 -0.9866 35 1 6.3313 0.7094 0.2158 36 1 6.2466 2.2217 -0.7192 37 1 6.3397 0.0577 -2.5320 38 1 8.3863 -0.3922 -3.5652 39 1 10.4229 -1.9180 -3.6882 40 1 12.8807 -1.9414 -3.6264 41 1 14.1135 -0.0408 -2.6799 42 1 15.6615 2.1199 -3.5478 43 1 10.3794 1.9466 -1.8638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836765552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:41 Heat of formation + Delta-G solvation = -78.118539 kcal Electronic energy + Delta-G solvation = -26354.929383 eV Core-core repulsion = 22334.240421 eV Total energy + Delta-G solvation = -4020.688962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01241 -37.52791 -37.47178 -36.49323 -36.25205 -35.49982 -34.34629 -32.99618 -31.10086 -30.28039 -29.74463 -27.84675 -25.23699 -24.03506 -23.45452 -21.68029 -20.83975 -20.26064 -19.78991 -18.27195 -18.04784 -17.57339 -16.95368 -16.58287 -15.99504 -15.89629 -15.33402 -15.24287 -15.03382 -14.60369 -14.49149 -14.27767 -14.07262 -13.66651 -13.06008 -12.84618 -12.72984 -12.52572 -12.49632 -12.39974 -12.26587 -12.20750 -12.07698 -11.96306 -11.61576 -11.40455 -11.13592 -11.07228 -10.89865 -10.40275 -10.24430 -10.05401 -9.69120 -9.42266 -9.22321 -9.06865 -8.87149 -7.32477 -6.85933 -6.51287 -4.31451 -0.24147 2.24892 2.72306 2.86213 2.99199 3.14898 3.19029 3.26687 3.37378 3.64652 3.73514 3.96475 4.05785 4.29760 4.35003 4.50047 4.51508 4.71905 4.77656 4.86455 4.95099 5.28927 5.30647 5.37802 5.40890 5.57228 5.70872 6.24567 6.33280 6.40080 6.42153 6.72976 6.78636 7.08295 7.17571 7.28179 7.40163 7.73087 7.82355 8.02625 8.19349 8.30429 8.41368 8.75344 8.90828 9.04362 9.05456 10.38059 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.002044 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.086964 B =13693.280452 C =14838.704304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 N -1.120 6.120 4 S 2.623 3.377 5 O -0.946 6.946 6 O -0.949 6.949 7 C -0.650 4.650 8 C 0.153 3.847 9 N -0.746 5.746 10 C 0.696 3.304 11 O -0.561 6.561 12 N -0.678 5.678 13 C 0.155 3.845 14 C -0.250 4.250 15 C -0.100 4.100 16 C -0.160 4.160 17 C 0.113 3.887 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.815 5.815 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.198 4.198 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.395 0.605 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.277 0.723 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.492 -5.124 -0.112 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.881 5.881 4 S 2.713 3.287 5 O -0.936 6.936 6 O -0.939 6.939 7 C -0.778 4.778 8 C 0.026 3.974 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.436 6.436 12 N -0.324 5.324 13 C 0.063 3.937 14 C -0.272 4.272 15 C -0.119 4.119 16 C -0.180 4.180 17 C 0.110 3.890 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.144 4.144 21 N -0.442 5.442 22 Si 0.740 3.260 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.219 4.219 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.253 0.747 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.229 0.771 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.088 0.912 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -25.328 -4.264 1.400 25.722 hybrid contribution -0.425 0.048 -1.490 1.550 sum -25.753 -4.216 -0.090 26.096 Atomic orbital electron populations 1.21951 0.93914 1.03131 1.02890 1.21337 0.96854 0.81571 1.02207 1.55687 1.28907 1.14742 1.88784 1.04695 0.73686 0.74528 0.75812 1.93633 1.84577 1.76253 1.39152 1.93644 1.85221 1.27908 1.87104 1.30967 1.09257 1.15444 1.22100 1.20669 0.84915 0.99860 0.91932 1.44963 1.05013 1.61776 1.28770 1.15975 0.80944 0.80438 0.82983 1.90997 1.68326 1.46336 1.37949 1.42506 1.06151 1.60435 1.23353 1.17261 0.78616 0.95209 1.02629 1.20087 0.94262 0.97624 1.15227 1.20528 0.92896 0.98049 1.00406 1.21629 1.00613 0.92407 1.03314 1.17573 0.90126 0.91807 0.89493 1.19495 1.02365 1.12129 1.15122 0.90589 1.25857 0.96544 0.98116 0.93926 1.69756 1.16547 1.36518 1.21392 0.86254 0.78369 0.81672 0.79658 1.19044 1.20517 1.19136 1.21312 0.94428 0.97736 1.08454 0.90879 0.91646 0.91893 0.91733 0.89953 0.74685 0.84086 0.84345 0.89949 0.89927 0.77080 0.77237 0.89336 0.88966 0.85353 0.91233 0.86763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.41 10.06 37.16 0.37 -0.04 16 2 C 0.11 0.38 6.85 -4.04 -0.03 0.35 16 3 N -1.12 -5.34 5.89 -10.61 -0.06 -5.40 16 4 S 2.62 20.83 5.46 -107.50 -0.59 20.25 16 5 O -0.95 -11.02 17.50 -57.54 -1.01 -12.02 16 6 O -0.95 -11.06 18.08 -57.54 -1.04 -12.10 16 7 C -0.65 -3.81 6.19 37.15 0.23 -3.58 16 8 C 0.15 1.67 5.68 -4.04 -0.02 1.65 16 9 N -0.75 -8.95 5.56 -65.23 -0.36 -9.31 16 10 C 0.70 12.52 8.40 -86.92 -0.73 11.79 16 11 O -0.56 -12.94 13.79 5.29 0.07 -12.86 16 12 N -0.68 -11.95 5.34 -14.27 -0.08 -12.03 16 13 C 0.15 3.52 6.29 -83.76 -0.53 3.00 16 14 C -0.25 -5.48 9.97 -39.10 -0.39 -5.87 16 15 C -0.10 -2.34 10.02 -39.69 -0.40 -2.73 16 16 C -0.16 -4.25 8.67 -38.84 -0.34 -4.58 16 17 C 0.11 3.16 5.55 -106.85 -0.59 2.57 16 18 C -0.46 -12.95 9.04 -37.74 -0.34 -13.29 16 19 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 20 C 0.07 1.84 5.42 -17.34 -0.09 1.75 16 21 N -0.81 -21.74 10.61 55.55 0.59 -21.15 16 22 Si 0.92 19.89 29.56 -169.99 -5.03 14.86 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.20 -5.22 8.43 -38.69 -0.33 -5.55 16 27 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.08 0.35 7.69 -51.93 -0.40 -0.05 16 32 H 0.42 1.44 8.62 -34.47 -0.30 1.15 16 33 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.12 8.49 -40.82 -0.35 2.78 16 38 H 0.39 5.17 8.84 -40.82 -0.36 4.81 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.13 3.53 6.15 -52.49 -0.32 3.20 16 42 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 43 H 0.11 3.14 6.23 -52.49 -0.33 2.81 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -38.30 377.07 -10.83 -49.13 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.83 Total: 9.48 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.18 Total: -14.53 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.09 Total: -47.88 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.97 Total: -36.98 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 16 Polarization: 20.83 SS G_CDS: -0.59 Total: 20.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.30 -10.83 -49.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836765552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.989 kcal (2) G-P(sol) polarization free energy of solvation -38.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds