Wall clock time and date at job start Tue Mar 31 2020 23:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47026 * 2 1 4 4 N 1.41601 * 113.99797 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00036 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00085 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00092 * 180.02562 * 5 4 3 8 8 N 1.46501 * 109.47369 * 179.97438 * 7 5 4 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 5 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46915 * 60.00009 * 24 22 20 26 26 H 1.48504 * 109.47412 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47244 * 300.00164 * 24 22 20 28 28 H 1.09006 * 109.46968 * 59.99853 * 1 2 3 29 29 H 1.09000 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47516 * 300.00289 * 1 2 3 31 31 H 1.08997 * 109.47222 * 240.00044 * 2 1 3 32 32 H 1.09006 * 109.46968 * 120.00147 * 2 1 3 33 33 H 0.96999 * 120.00498 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.47520 * 59.99961 * 7 5 4 35 35 H 1.09001 * 109.47487 * 300.00000 * 7 5 4 36 36 H 0.97005 * 119.99663 * 0.02562 * 8 7 5 37 37 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 38 38 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 39 39 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 40 40 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 41 41 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4590 0.0006 5 6 3.9975 2.6758 0.0001 6 8 3.3101 3.6750 -0.0013 7 6 5.4998 2.7948 0.0002 8 7 5.8776 4.2102 -0.0010 9 6 7.1791 4.5603 -0.0007 10 8 8.0397 3.7014 0.0001 11 7 7.5266 5.8625 0.0039 12 6 8.8761 6.2272 0.1025 13 6 9.8533 5.4427 -0.4916 14 6 11.1833 5.8064 -0.3985 15 6 11.5459 6.9483 0.2973 16 9 12.8480 7.2965 0.3895 17 6 10.5774 7.7331 0.8976 18 6 9.2400 7.3766 0.8037 19 8 8.2877 8.1454 1.3915 20 6 8.6952 9.3005 1.9544 21 1 9.7478 9.5387 1.9969 22 6 7.7632 10.1827 2.4790 23 7 6.4809 9.8926 2.4270 24 14 8.3279 11.7830 3.2597 25 1 9.0616 12.5925 2.2538 26 1 7.1463 12.5435 3.7399 27 1 9.2248 11.4855 4.4053 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9677 0.6599 0.0006 34 1 5.9027 2.3108 -0.8896 35 1 5.9026 2.3116 0.8903 36 1 5.1910 4.8955 -0.0013 37 1 6.8427 6.5472 -0.0610 38 1 9.5745 4.5493 -1.0307 39 1 11.9425 5.1964 -0.8653 40 1 10.8626 8.6230 1.4391 41 1 5.8287 10.5100 2.7937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844564578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:09 Heat of formation + Delta-G solvation = -119.132486 kcal Electronic energy + Delta-G solvation = -28458.559148 eV Core-core repulsion = 23869.878512 eV Total energy + Delta-G solvation = -4588.680636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.79183 -41.81497 -40.88735 -40.18571 -38.53422 -38.04555 -35.60429 -35.49307 -34.29582 -34.15641 -31.58675 -31.05376 -30.11840 -28.05436 -27.32296 -24.14487 -23.99322 -23.31225 -22.11634 -21.82673 -20.15617 -19.89852 -19.59196 -19.20374 -18.29169 -17.72722 -17.35038 -17.07395 -16.91370 -16.60450 -16.51474 -16.41907 -15.97456 -15.93287 -15.66510 -15.38549 -15.20230 -14.96920 -14.84346 -14.30591 -14.13506 -13.92132 -13.69031 -13.56420 -13.43741 -13.39159 -12.98269 -12.58426 -12.54126 -12.32565 -12.16991 -11.79122 -11.64285 -11.38021 -11.30913 -11.01613 -10.80742 -10.32149 -10.04015 -9.51311 -8.72918 -8.49122 -6.15868 0.24194 0.50761 0.61709 1.36135 1.37253 1.46093 1.51578 1.63311 2.02213 2.15517 2.71037 3.07617 3.12269 3.18841 3.22295 3.49317 3.63410 3.98675 4.05910 4.12536 4.20513 4.30179 4.31874 4.36888 4.39935 4.63716 4.80119 4.91215 4.97660 5.03416 5.17262 5.20702 5.26374 5.32086 5.39661 5.57644 5.66158 5.84855 5.95061 6.10138 6.14781 6.84294 6.95020 7.09035 7.39520 7.65514 8.70972 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.002476 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.614337 B =11305.684655 C =13723.131756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 O -0.178 6.178 4 N -0.579 5.579 5 C 0.522 3.478 6 O -0.566 6.566 7 C 0.138 3.862 8 N -0.731 5.731 9 C 0.713 3.287 10 O -0.601 6.601 11 N -0.667 5.667 12 C 0.078 3.922 13 C -0.048 4.048 14 C -0.202 4.202 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.265 4.265 18 C 0.129 3.871 19 O -0.204 6.204 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.011 4.011 23 N -0.907 5.907 24 Si 1.012 2.988 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.261 1.261 28 H 0.059 0.941 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.431 0.569 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -20.153 -6.269 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 O -0.183 6.183 4 N -0.282 5.282 5 C 0.310 3.690 6 O -0.443 6.443 7 C 0.011 3.989 8 N -0.390 5.390 9 C 0.414 3.586 10 O -0.481 6.481 11 N -0.313 5.313 12 C -0.018 4.018 13 C -0.068 4.068 14 C -0.222 4.222 15 C 0.102 3.898 16 F -0.124 7.124 17 C -0.286 4.286 18 C 0.075 3.925 19 O -0.109 6.109 20 C -0.491 4.491 21 H 0.118 0.882 22 C -0.211 4.211 23 N -0.544 5.544 24 Si 0.831 3.169 25 H -0.183 1.183 26 H -0.197 1.197 27 H -0.185 1.185 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.276 0.724 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.248 0.752 37 H 0.248 0.752 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.432 -20.045 -6.160 21.662 hybrid contribution -0.335 1.129 0.593 1.318 sum -5.767 -18.916 -5.567 20.544 Atomic orbital electron populations 1.21768 0.91357 1.04498 1.02932 1.23327 0.96958 0.82233 1.03149 1.90626 1.01380 1.28827 1.97465 1.47129 0.95511 1.09033 1.76526 1.20931 0.90482 0.81996 0.75624 1.90762 1.65092 1.37706 1.50785 1.20893 0.87657 0.82722 1.07638 1.44693 1.05577 1.08825 1.79857 1.15664 0.82944 0.82346 0.77680 1.90846 1.49061 1.49220 1.59023 1.42187 1.06767 1.06632 1.75712 1.16923 0.84202 0.96686 1.03985 1.20904 0.90476 0.98820 0.96605 1.20901 0.97233 0.97934 1.06090 1.17472 0.77125 0.95535 0.99647 1.91428 1.34016 1.92154 1.94773 1.20912 0.91888 1.05033 1.10724 1.19214 0.88653 0.92520 0.92077 1.83922 1.32387 1.31175 1.63399 1.21716 0.94929 0.94521 1.37958 0.88225 1.26413 0.94747 1.02497 0.97409 1.70133 1.01670 1.38272 1.44319 0.84736 0.78059 0.75373 0.78691 1.18285 1.19677 1.18505 0.92194 0.87451 0.92369 0.90007 0.90248 0.72431 0.84980 0.85941 0.75236 0.75187 0.82318 0.82210 0.84734 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.02 0.19 6.95 71.98 0.50 0.69 16 3 O -0.18 -3.50 11.11 -21.39 -0.24 -3.74 16 4 N -0.58 -8.97 6.39 -173.53 -1.11 -10.08 16 5 C 0.52 11.47 8.04 87.66 0.71 12.18 16 6 O -0.57 -18.61 16.07 14.35 0.23 -18.38 16 7 C 0.14 2.55 6.15 85.63 0.53 3.08 16 8 N -0.73 -19.77 5.53 -482.29 -2.67 -22.44 16 9 C 0.71 23.77 8.41 179.05 1.51 25.27 16 10 O -0.60 -21.32 13.76 -4.00 -0.05 -21.38 16 11 N -0.67 -25.02 5.20 -316.70 -1.65 -26.67 16 12 C 0.08 3.20 6.33 38.22 0.24 3.44 16 13 C -0.05 -1.70 8.70 22.37 0.19 -1.51 16 14 C -0.20 -6.77 10.02 22.33 0.22 -6.55 16 15 C 0.12 4.65 7.29 22.37 0.16 4.81 16 16 F -0.14 -5.21 17.26 44.97 0.78 -4.43 16 17 C -0.26 -11.60 9.14 22.42 0.20 -11.40 16 18 C 0.13 6.10 6.66 22.68 0.15 6.25 16 19 O -0.20 -11.20 9.32 -22.76 -0.21 -11.41 16 20 C -0.42 -22.89 9.49 67.91 0.64 -22.25 16 21 H 0.10 5.12 5.20 -2.91 -0.02 5.11 16 22 C -0.01 -0.61 5.49 84.83 0.47 -0.14 16 23 N -0.91 -52.52 13.67 21.61 0.30 -52.23 16 24 Si 1.01 41.57 29.55 68.60 2.03 43.60 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.43 2.54 8.54 -92.71 -0.79 1.74 16 34 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.41 11.81 7.46 -92.70 -0.69 11.12 16 37 H 0.41 15.63 8.59 -92.71 -0.80 14.83 16 38 H 0.16 5.27 6.19 -2.91 -0.02 5.25 16 39 H 0.16 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.14 6.00 5.64 -2.91 -0.02 5.98 16 41 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.14 367.12 2.53 -74.61 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -1.14 Total: 39.21 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.27 Total: 13.35 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -5.13 Total: -111.42 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.27 Total: -54.91 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -77.14 2.53 -74.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844564578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.522 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds