Wall clock time and date at job start Tue Mar 31 2020 22:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.57901 * 2 1 4 4 C 1.53271 * 109.58129 * 239.59893 * 2 1 3 5 5 C 1.53016 * 109.49841 * 190.02525 * 4 2 1 6 6 C 1.53368 * 109.28965 * 69.24453 * 5 4 2 7 7 C 1.51117 * 108.24846 * 311.22368 * 6 5 4 8 8 N 1.30555 * 127.08862 * 195.99896 * 7 6 5 9 9 C 1.33460 * 109.68285 * 179.97438 * 8 7 6 10 10 C 1.36827 * 107.83505 * 0.02562 * 9 8 7 11 11 C 1.46761 * 126.91702 * 179.97438 * 10 9 8 12 12 O 1.21681 * 120.00350 * 158.00273 * 11 10 9 13 13 N 1.34779 * 120.00011 * 338.00586 * 11 10 9 14 14 S 1.65596 * 120.00333 * 184.84175 * 13 11 10 15 15 O 1.42102 * 104.27593 * 181.07243 * 14 13 11 16 16 O 1.42100 * 104.27773 * 308.92497 * 14 13 11 17 17 C 1.81403 * 104.45144 * 64.99962 * 14 13 11 18 18 C 1.53001 * 109.46982 * 180.02562 * 17 14 13 19 19 C 1.50696 * 109.46675 * 179.97438 * 18 17 14 20 20 H 1.07999 * 120.00596 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00200 * 179.97438 * 19 18 17 22 22 N 1.31522 * 119.99721 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00442 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47410 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47203 * 120.00215 * 23 21 19 26 26 H 1.48502 * 109.47284 * 240.00141 * 23 21 19 27 27 N 1.34873 * 123.91914 * 15.99509 * 7 6 5 28 28 H 1.08997 * 109.47231 * 325.15044 * 1 2 3 29 29 H 1.09006 * 109.47051 * 205.14887 * 1 2 3 30 30 H 1.09000 * 109.47402 * 85.15208 * 1 2 3 31 31 H 1.08993 * 109.47236 * 309.95166 * 4 2 1 32 32 H 1.09003 * 109.47145 * 69.97504 * 4 2 1 33 33 H 1.09000 * 109.43456 * 309.32541 * 5 4 2 34 34 H 1.09001 * 109.57229 * 189.24334 * 5 4 2 35 35 H 1.08995 * 109.71348 * 191.53013 * 6 5 4 36 36 H 1.08998 * 109.70821 * 70.90749 * 6 5 4 37 37 H 1.08003 * 126.08499 * 179.97438 * 9 8 7 38 38 H 0.97008 * 119.99965 * 4.83699 * 13 11 10 39 39 H 1.09003 * 109.46699 * 300.00333 * 17 14 13 40 40 H 1.09000 * 109.47118 * 60.00058 * 17 14 13 41 41 H 1.08996 * 109.46994 * 299.99561 * 18 17 14 42 42 H 1.09000 * 109.47202 * 60.00042 * 18 17 14 43 43 H 0.96995 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2455 5 6 3.5530 -0.9500 -1.1229 6 6 3.8276 -1.9787 -0.0191 7 6 3.0395 -1.5791 1.2069 8 7 3.2118 -2.0080 2.4279 9 6 2.3246 -1.4266 3.2379 10 6 1.5534 -0.5871 2.4811 11 6 0.4497 0.2587 2.9504 12 8 0.1095 1.2305 2.3018 13 7 -0.1872 -0.0408 4.0998 14 16 -1.5082 0.8409 4.5686 15 8 -1.8895 0.2670 5.8114 16 8 -1.0746 2.1917 4.4877 17 6 -2.7567 0.4959 3.2985 18 6 -4.0399 1.2633 3.6230 19 6 -5.0768 0.9772 2.5676 20 1 -4.8440 0.3140 1.7475 21 6 -6.3231 1.5612 2.6492 22 7 -6.6068 2.3684 3.6481 23 14 -7.6086 1.2060 1.3413 24 1 -7.0441 0.2738 0.3326 25 1 -8.8013 0.5879 1.9744 26 1 -8.0023 2.4743 0.6768 27 7 2.0208 -0.6954 1.1917 28 1 -0.3633 0.8433 0.5872 29 1 -0.3633 -0.9303 0.4368 30 1 -0.3634 0.0868 -1.0240 31 1 1.5437 -1.6953 -1.3329 32 1 1.8338 -0.1309 -2.1311 33 1 4.0371 -0.0067 -0.8700 34 1 3.9466 -1.3186 -2.0702 35 1 4.8918 -1.9908 0.2158 36 1 3.5129 -2.9678 -0.3519 37 1 2.2314 -1.5903 4.3013 38 1 0.1282 -0.7730 4.6525 39 1 -2.3813 0.8115 2.3250 40 1 -2.9677 -0.5733 3.2774 41 1 -4.4153 0.9481 4.5965 42 1 -3.8286 2.3324 3.6438 43 1 -7.4834 2.7795 3.7054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845503273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:22 Heat of formation + Delta-G solvation = -58.141619 kcal Electronic energy + Delta-G solvation = -28360.316021 eV Core-core repulsion = 24340.493323 eV Total energy + Delta-G solvation = -4019.822697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.86591 -39.80722 -37.48815 -36.75278 -35.67304 -34.62366 -34.03978 -33.94610 -31.24184 -31.05465 -29.76418 -27.43792 -25.68854 -24.13332 -23.28448 -22.38742 -21.76347 -21.07543 -19.72806 -19.16448 -18.38640 -17.58543 -16.68406 -16.54809 -16.05137 -15.89357 -15.36618 -15.19377 -15.09510 -15.01171 -14.60980 -14.50672 -14.38815 -13.73756 -13.49973 -13.32485 -12.76466 -12.57775 -12.56317 -12.42485 -11.93569 -11.85258 -11.77532 -11.66640 -11.62008 -11.57750 -11.31214 -11.12401 -11.03389 -10.79499 -10.64237 -10.44487 -10.39222 -10.12022 -9.97103 -9.76130 -9.22362 -8.76164 -8.53961 -6.16003 -4.21658 0.39619 0.91980 2.14892 2.39423 2.75069 2.88064 3.23120 3.30363 3.33507 3.78985 3.91277 4.04339 4.07974 4.20614 4.26097 4.33734 4.57026 4.70207 4.75772 4.81637 4.86667 4.90837 5.00961 5.19371 5.19961 5.25096 5.32169 5.39955 5.50539 5.51999 5.58139 5.63225 5.72638 5.86521 6.13603 6.21069 6.38888 6.55044 6.73645 7.23954 7.30232 7.35435 7.65061 7.76864 8.12138 8.81388 9.43103 10.95114 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.003370 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.990110 B = 8306.403523 C = 9782.422695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.130 3.870 3 H 0.101 0.899 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.036 4.036 7 C 0.235 3.765 8 N -0.491 5.491 9 C 0.045 3.955 10 C -0.088 4.088 11 C 0.615 3.385 12 O -0.485 6.485 13 N -1.048 6.048 14 S 2.566 3.434 15 O -0.949 6.949 16 O -0.933 6.933 17 C -0.575 4.575 18 C 0.030 3.970 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 N -0.414 5.414 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.182 0.818 38 H 0.430 0.570 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.934 -9.778 -9.099 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.028 3.972 3 H 0.119 0.881 4 C -0.171 4.171 5 C -0.167 4.167 6 C -0.075 4.075 7 C -0.027 4.027 8 N -0.210 5.210 9 C -0.110 4.110 10 C -0.206 4.206 11 C 0.402 3.598 12 O -0.358 6.358 13 N -0.808 5.808 14 S 2.666 3.334 15 O -0.939 6.939 16 O -0.923 6.923 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.527 5.527 23 Si 0.728 3.272 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 N -0.095 5.095 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.199 0.801 38 H 0.265 0.735 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.073 -8.859 -8.638 24.437 hybrid contribution -1.352 -0.303 -0.957 1.684 sum 19.721 -9.162 -9.595 23.768 Atomic orbital electron populations 1.22648 0.91977 1.05231 1.04604 1.21801 0.96886 0.96666 0.81841 0.88089 1.22048 0.96206 1.02033 0.96775 1.21712 0.95967 0.99791 0.99205 1.20321 0.99481 0.99858 0.87838 1.23537 0.90981 0.92384 0.95814 1.69971 1.25064 1.26206 0.99716 1.22755 0.93630 0.94795 0.99867 1.20401 1.04885 1.09131 0.86217 1.16594 0.80323 0.83141 0.79735 1.90889 1.65009 1.25817 1.54126 1.55247 1.46398 1.48637 1.30527 1.06788 0.75028 0.74480 0.77089 1.93604 1.81929 1.78546 1.39869 1.93609 1.78932 1.32848 1.86872 1.30354 1.14084 1.10974 1.15544 1.19001 0.87731 0.95181 0.99044 1.20990 0.96746 1.28953 1.09151 0.91948 1.25066 0.98531 0.94859 0.96005 1.69963 1.22253 1.30067 1.30436 0.86397 0.81214 0.78212 0.81355 1.19667 1.20759 1.20754 1.45437 1.25077 1.32015 1.07007 0.87523 0.92038 0.90341 0.90334 0.88793 0.90904 0.89563 0.88202 0.88727 0.80056 0.73453 0.85330 0.85905 0.94660 0.94506 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 8.19 37.15 0.30 -1.74 16 2 C 0.13 1.23 3.27 -67.82 -0.22 1.00 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -0.80 5.12 -26.58 -0.14 -0.94 16 5 C -0.13 -0.63 5.95 -26.53 -0.16 -0.79 16 6 C -0.04 -0.23 6.33 -27.49 -0.17 -0.40 16 7 C 0.24 2.44 7.64 -155.32 -1.19 1.26 16 8 N -0.49 -5.89 11.20 -10.35 -0.12 -6.00 16 9 C 0.04 0.50 11.38 -17.35 -0.20 0.30 16 10 C -0.09 -1.09 6.56 -82.35 -0.54 -1.63 16 11 C 0.61 8.73 6.87 -12.82 -0.09 8.64 16 12 O -0.49 -8.15 11.29 -13.07 -0.15 -8.29 16 13 N -1.05 -13.79 5.59 30.28 0.17 -13.62 16 14 S 2.57 46.02 5.12 -107.50 -0.55 45.47 16 15 O -0.95 -18.56 18.08 -57.54 -1.04 -19.60 16 16 O -0.93 -20.10 16.93 -65.14 -1.10 -21.20 16 17 C -0.57 -11.05 5.84 37.16 0.22 -10.84 16 18 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 19 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 23 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 N -0.41 -4.62 2.96 -102.72 -0.30 -4.92 16 28 H 0.11 1.45 4.96 -51.93 -0.26 1.20 16 29 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 31 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.18 1.44 7.78 -52.48 -0.41 1.03 16 38 H 0.43 3.98 8.07 -34.47 -0.28 3.70 16 39 H 0.13 2.36 7.39 -51.92 -0.38 1.98 16 40 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -37.13 363.55 -10.55 -47.68 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.92 Total: 1.96 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.73 Total: -17.47 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.49 Total: -50.01 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -2.29 Total: -49.10 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -0.55 Total: 45.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.13 -10.55 -47.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845503273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.464 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds