Wall clock time and date at job start Tue Mar 31 2020 23:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47034 * 2 1 4 4 C 1.46507 * 120.00147 * 270.00028 * 3 2 1 5 5 C 1.50694 * 109.46930 * 270.00156 * 4 3 2 6 6 H 1.08003 * 120.00351 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99841 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99777 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47445 * 119.99508 * 9 7 5 12 12 H 1.48494 * 109.47126 * 240.00048 * 9 7 5 13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1 14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00260 * 0.02562 * 13 3 2 16 16 O 1.45205 * 109.47702 * 180.02562 * 15 13 3 17 17 C 1.34741 * 117.00455 * 180.02562 * 16 15 13 18 18 O 1.21513 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.47411 * 120.00162 * 180.27225 * 17 16 15 20 20 C 1.39960 * 120.19244 * 89.44890 * 19 17 16 21 21 F 1.35094 * 120.10316 * 359.97003 * 20 19 17 22 22 C 1.38206 * 119.79571 * 179.74550 * 20 19 17 23 23 C 1.38322 * 120.19839 * 0.52994 * 22 20 19 24 24 C 1.50697 * 119.80226 * 179.69920 * 23 22 20 25 25 C 1.38304 * 120.39197 * 359.71914 * 23 22 20 26 26 C 1.38217 * 120.20177 * 0.02611 * 25 23 22 27 27 F 1.35099 * 120.10047 * 179.97438 * 26 25 23 28 28 H 1.08999 * 109.46842 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99778 * 1 2 3 30 30 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46842 * 240.00031 * 2 1 3 32 32 H 1.08996 * 109.46757 * 120.00066 * 2 1 3 33 33 H 1.09003 * 109.46719 * 30.00301 * 4 3 2 34 34 H 1.08999 * 109.46859 * 150.00021 * 4 3 2 35 35 H 0.96997 * 120.00169 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47553 * 59.99845 * 15 13 3 37 37 H 1.09010 * 109.47374 * 299.99590 * 15 13 3 38 38 H 1.08005 * 119.90279 * 180.22639 * 22 20 19 39 39 H 1.08998 * 109.47077 * 270.02337 * 24 23 22 40 40 H 1.08996 * 109.47076 * 30.02242 * 24 23 22 41 41 H 1.09001 * 109.47140 * 150.02293 * 24 23 22 42 42 H 1.07999 * 119.90248 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3906 -2.8775 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0977 -3.4164 10 1 6.6015 1.2424 -2.4159 11 1 5.9218 1.4191 -4.7372 12 1 6.6210 3.3990 -3.5240 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9924 1.3060 2.4722 16 8 2.3061 2.1958 3.5760 17 6 2.1353 1.7099 4.8211 18 8 1.7347 0.5738 4.9803 19 6 2.4283 2.5587 5.9901 20 6 1.4285 3.3697 6.5394 21 9 0.1902 3.3781 5.9994 22 6 1.7107 4.1583 7.6387 23 6 2.9796 4.1560 8.1894 24 6 3.2793 5.0244 9.3839 25 6 3.9750 3.3616 7.6499 26 6 3.7094 2.5627 6.5537 27 9 4.6833 1.7879 6.0281 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 3.6754 3.5172 -4.4434 36 1 2.6229 0.4187 2.5299 37 1 0.9444 1.0114 2.5303 38 1 0.9394 4.7819 8.0662 39 1 3.6244 6.0014 9.0454 40 1 2.3755 5.1453 9.9811 41 1 4.0547 4.5548 9.9891 42 1 4.9630 3.3663 8.0858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850320822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:41 Heat of formation + Delta-G solvation = -181.135052 kcal Electronic energy + Delta-G solvation = -29316.716364 eV Core-core repulsion = 24705.427134 eV Total energy + Delta-G solvation = -4611.289231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.48259 -49.45231 -40.70234 -39.42528 -38.84231 -36.46590 -35.31587 -33.43557 -32.84085 -30.94811 -30.19383 -29.50113 -28.25114 -26.49249 -23.65282 -23.48444 -23.07386 -22.52631 -21.31384 -18.88048 -18.48710 -18.02290 -17.95158 -17.15902 -16.59461 -16.38027 -16.31268 -16.15152 -16.09233 -15.72799 -15.52813 -15.15566 -14.51969 -14.45273 -14.19971 -14.08401 -13.67798 -13.51453 -13.36006 -13.01887 -12.73011 -12.50474 -12.41630 -12.29651 -12.13066 -12.07786 -12.00127 -11.64067 -11.24871 -10.95629 -10.92241 -10.86770 -10.64791 -10.54820 -10.15074 -9.64787 -9.43448 -9.29489 -9.01545 -8.45321 -7.76461 -6.06169 -4.10893 0.19238 0.45785 1.75931 2.22260 2.75769 3.21547 3.22831 3.29716 3.37543 3.42086 3.73965 3.77730 4.00888 4.24399 4.40669 4.47292 4.52269 4.83188 4.83298 4.98080 5.04393 5.07170 5.16339 5.19392 5.25313 5.28681 5.35264 5.45166 5.47040 5.58084 5.72817 5.72840 5.98106 6.10078 6.16618 6.18977 6.44654 6.97945 7.38575 7.39972 7.48986 7.90027 8.19938 8.27836 8.83360 8.98381 9.54171 11.02099 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002689 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.838185 B =10408.998486 C =11279.752091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.517 6.517 15 C 0.047 3.953 16 O -0.315 6.315 17 C 0.518 3.482 18 O -0.485 6.485 19 C -0.183 4.183 20 C 0.179 3.821 21 F -0.117 7.117 22 C -0.167 4.167 23 C -0.006 4.006 24 C -0.120 4.120 25 C -0.166 4.166 26 C 0.180 3.820 27 F -0.116 7.116 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -0.781 25.759 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.030 4.030 16 O -0.229 6.229 17 C 0.359 3.641 18 O -0.373 6.373 19 C -0.186 4.186 20 C 0.159 3.841 21 F -0.095 7.095 22 C -0.186 4.186 23 C -0.007 4.007 24 C -0.176 4.176 25 C -0.185 4.185 26 C 0.160 3.840 27 F -0.094 7.094 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.171 0.829 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.831 -0.439 25.512 25.802 hybrid contribution 0.811 -0.613 -0.806 1.297 sum -3.021 -1.052 24.706 24.912 Atomic orbital electron populations 1.22238 0.96484 1.01738 1.02449 1.21524 0.93799 0.83910 1.03084 1.48208 1.63789 1.13428 1.07054 1.19350 0.96537 0.93725 0.77489 1.21465 0.96820 1.32013 1.06342 0.92325 1.24935 0.97946 0.94853 0.96359 1.69937 1.35639 1.33393 1.14337 0.86425 0.84524 0.78089 0.78293 1.19772 1.20944 1.20839 1.19631 0.79819 0.87153 0.84186 1.90724 1.44441 1.17436 1.86675 1.23109 1.03015 0.92712 0.84209 1.86719 1.77905 1.44571 1.13688 1.20606 0.74609 0.85439 0.83473 1.90884 1.41035 1.18540 1.86801 1.19013 0.95024 1.05467 0.99112 1.17179 0.79359 0.94750 0.92802 1.91599 1.38260 1.94797 1.84882 1.21022 0.98771 1.02057 0.96703 1.19749 0.91349 0.93956 0.95628 1.20928 1.03430 0.99055 0.94196 1.21030 1.01870 0.98798 0.96826 1.17198 0.83027 0.90922 0.92888 1.91610 1.60327 1.72090 1.85421 0.93131 0.91737 0.91843 0.89315 0.91754 0.94547 0.93677 0.92720 0.88290 0.88382 0.82882 0.89607 0.90362 0.90357 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 11.13 7.75 -10.99 -0.09 11.05 16 14 O -0.52 -13.73 16.08 -14.11 -0.23 -13.95 16 15 C 0.05 0.81 4.51 36.00 0.16 0.97 16 16 O -0.31 -5.83 9.77 -47.28 -0.46 -6.29 16 17 C 0.52 8.54 6.68 34.47 0.23 8.77 16 18 O -0.49 -8.49 16.90 -19.28 -0.33 -8.81 16 19 C -0.18 -2.47 5.76 -104.87 -0.60 -3.08 16 20 C 0.18 2.04 7.29 -38.95 -0.28 1.76 16 21 F -0.12 -1.49 16.83 2.25 0.04 -1.45 16 22 C -0.17 -1.28 9.65 -39.56 -0.38 -1.66 16 23 C -0.01 -0.04 5.88 -104.57 -0.62 -0.66 16 24 C -0.12 -0.37 10.00 36.00 0.36 -0.01 16 25 C -0.17 -1.31 9.65 -39.56 -0.38 -1.69 16 26 C 0.18 2.09 7.29 -38.95 -0.28 1.81 16 27 F -0.12 -1.53 16.83 2.25 0.04 -1.50 16 28 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.10 1.54 7.40 -51.93 -0.38 1.16 16 37 H 0.10 1.47 7.18 -51.92 -0.37 1.10 16 38 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.16 8.08 -51.93 -0.42 -0.26 16 41 H 0.08 0.16 8.08 -51.93 -0.42 -0.26 16 42 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -35.84 378.29 -7.11 -42.95 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -5.19 Total: -4.38 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.97 Total: 9.71 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.31 Total: -38.95 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.01 Total: -29.06 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.84 -7.11 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850320822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.181 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds