Wall clock time and date at job start Tue Mar 31 2020 22:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34229 * 116.99422 * 2 1 4 4 O 1.20818 * 120.00625 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99430 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47142 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47094 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99705 * 270.31046 * 7 6 5 9 9 H 1.07994 * 120.00128 * 43.87559 * 8 7 6 10 10 C 1.38954 * 120.00064 * 223.86890 * 8 7 6 11 11 N 1.31412 * 120.00362 * 354.79088 * 10 8 7 12 12 Si 1.86800 * 119.99963 * 174.78151 * 10 8 7 13 13 H 1.48501 * 109.47041 * 60.00755 * 12 10 8 14 14 H 1.48503 * 109.46967 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47524 * 300.00426 * 12 10 8 16 16 C 1.34774 * 120.00718 * 90.31569 * 7 6 5 17 17 O 1.21292 * 120.00679 * 183.81419 * 16 7 6 18 18 C 1.50706 * 119.99503 * 3.81098 * 16 7 6 19 19 H 1.08999 * 109.47264 * 317.88654 * 18 16 7 20 20 C 1.53007 * 109.46881 * 77.88439 * 18 16 7 21 21 C 1.50698 * 109.47024 * 197.88348 * 18 16 7 22 22 C 1.38426 * 120.02221 * 120.00537 * 21 18 16 23 23 F 1.35096 * 120.01284 * 359.97438 * 22 21 18 24 24 C 1.38475 * 119.97063 * 179.97438 * 22 21 18 25 25 C 1.38204 * 120.02813 * 0.27009 * 24 22 21 26 26 C 1.38213 * 120.04889 * 359.45321 * 25 24 22 27 27 C 1.38413 * 120.02923 * 299.97709 * 21 18 16 28 28 F 1.35103 * 120.00914 * 0.02562 * 27 21 18 29 29 H 1.08996 * 109.46708 * 299.99757 * 1 2 3 30 30 H 1.09003 * 109.47166 * 59.99694 * 1 2 3 31 31 H 1.08995 * 109.46609 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47338 * 60.00429 * 5 3 2 33 33 H 1.08999 * 109.47562 * 300.00150 * 5 3 2 34 34 H 1.08993 * 109.46837 * 59.99736 * 6 5 3 35 35 H 1.09005 * 109.46546 * 300.00016 * 6 5 3 36 36 H 0.96991 * 120.00622 * 184.21897 * 11 10 8 37 37 H 1.09000 * 109.47013 * 65.75929 * 20 18 16 38 38 H 1.09002 * 109.46735 * 185.75504 * 20 18 16 39 39 H 1.08994 * 109.47405 * 305.76132 * 20 18 16 40 40 H 1.07998 * 119.98400 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.97671 * 179.70369 * 25 24 22 42 42 H 1.07998 * 119.98782 * 180.25121 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 7 5.4630 2.8189 -0.0010 8 6 6.1489 2.8474 1.1858 9 1 5.8702 2.1787 1.9867 10 6 7.2026 3.7366 1.3581 11 7 7.6083 4.4778 0.3516 12 14 8.0424 3.8788 3.0206 13 1 8.6181 2.5631 3.3984 14 1 9.1272 4.8900 2.9423 15 1 7.0495 4.2967 4.0427 16 6 6.1348 2.8615 -1.1686 17 8 7.3477 2.8551 -1.1712 18 6 5.3788 2.9170 -2.4712 19 1 4.5334 2.2302 -2.4302 20 6 4.8686 4.3405 -2.7044 21 6 6.2942 2.5201 -3.6005 22 6 5.9864 1.4251 -4.3895 23 9 4.8653 0.7113 -4.1470 24 6 6.8280 1.0617 -5.4273 25 6 7.9779 1.7884 -5.6721 26 6 8.2833 2.8853 -4.8886 27 6 7.4431 3.2505 -3.8502 28 9 7.7448 4.3195 -3.0810 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 3.9557 0.7811 -0.8909 33 1 3.9564 0.7806 0.8891 34 1 3.6107 3.2357 0.8906 35 1 3.6099 3.2368 -0.8894 36 1 8.3822 5.0534 0.4540 37 1 5.7158 5.0112 -2.8473 38 1 4.2367 4.3590 -3.5924 39 1 4.2899 4.6653 -1.8397 40 1 6.5883 0.2072 -6.0426 41 1 8.6362 1.5014 -6.4787 42 1 9.1799 3.4549 -5.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:27 Heat of formation + Delta-G solvation = -159.366334 kcal Electronic energy + Delta-G solvation = -31320.053041 eV Core-core repulsion = 26709.707773 eV Total energy + Delta-G solvation = -4610.345268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.74788 -48.16248 -40.28004 -39.05321 -37.95057 -36.38777 -34.49955 -33.65747 -31.94744 -30.21929 -29.95300 -29.11612 -27.55188 -25.14585 -24.21967 -23.23844 -22.46341 -21.55549 -20.39825 -19.03043 -17.67924 -17.48430 -17.24797 -16.44514 -16.36404 -16.13787 -15.68648 -15.53458 -15.14998 -15.04381 -14.68109 -14.62433 -14.21266 -13.93018 -13.76123 -13.61718 -13.18244 -13.10517 -12.59531 -12.50909 -12.32741 -12.21840 -11.98731 -11.78345 -11.60610 -11.47424 -11.41744 -11.09653 -10.89906 -10.81267 -10.73284 -10.57717 -10.40109 -10.26753 -10.24853 -10.05049 -8.80307 -8.57852 -8.33114 -7.82468 -7.09317 -5.84234 -3.85876 1.27233 1.37202 2.42542 2.87728 3.34013 3.37915 3.38438 3.66695 4.25922 4.29720 4.45402 4.75196 4.81694 4.91478 4.97924 5.10203 5.12624 5.16608 5.21978 5.32561 5.40061 5.44650 5.49402 5.58428 5.72689 5.86724 5.91846 5.94271 6.09375 6.21084 6.25878 6.31006 6.32825 6.38904 6.41675 6.48824 6.54543 6.67906 6.81279 7.14067 7.65649 7.93900 8.30223 9.12722 9.22907 9.69587 10.41231 11.06426 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007523 B = 0.006150 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.235014 B = 4551.802668 C = 7542.962953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.509 6.509 5 C -0.133 4.133 6 C 0.118 3.882 7 N -0.460 5.460 8 C -0.340 4.340 9 H 0.078 0.922 10 C 0.048 3.952 11 N -0.804 5.804 12 Si 0.910 3.090 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.475 3.525 17 O -0.486 6.486 18 C -0.074 4.074 19 H 0.085 0.915 20 C -0.138 4.138 21 C -0.130 4.130 22 C 0.125 3.875 23 F -0.135 7.135 24 C -0.179 4.179 25 C -0.070 4.070 26 C -0.179 4.179 27 C 0.178 3.822 28 F -0.099 7.099 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -6.225 -9.692 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.397 6.397 5 C -0.172 4.172 6 C -0.008 4.008 7 N -0.183 5.183 8 C -0.468 4.468 9 H 0.095 0.905 10 C -0.163 4.163 11 N -0.438 5.438 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.260 3.740 17 O -0.359 6.359 18 C -0.096 4.096 19 H 0.103 0.897 20 C -0.196 4.196 21 C -0.132 4.132 22 C 0.106 3.894 23 F -0.114 7.114 24 C -0.198 4.198 25 C -0.089 4.089 26 C -0.199 4.199 27 C 0.158 3.842 28 F -0.077 7.077 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.332 -5.707 -9.699 12.912 hybrid contribution -0.032 0.069 1.043 1.046 sum -6.364 -5.637 -8.656 12.133 Atomic orbital electron populations 1.23201 0.77084 1.03253 1.02381 1.86553 1.22946 1.34175 1.84371 1.24085 0.92372 0.80990 0.71649 1.90641 1.67354 1.36260 1.45448 1.22097 0.85861 1.03169 1.06059 1.21344 0.85157 0.91263 1.03023 1.43141 1.01652 1.68401 1.05087 1.18938 1.16951 1.19478 0.91385 0.90466 1.25379 0.98463 0.95436 0.96979 1.70123 1.22644 1.22445 1.28573 0.86306 0.78796 0.77855 0.83262 1.20413 1.21282 1.20310 1.19474 0.87986 0.83393 0.83122 1.90554 1.13116 1.47135 1.85084 1.20285 0.97087 0.98941 0.93315 0.89667 1.21770 1.01631 0.94808 1.01346 1.19653 0.97944 0.96514 0.99065 1.17207 0.84553 0.91260 0.96397 1.91466 1.49349 1.76719 1.93866 1.20972 0.96356 1.03091 0.99423 1.20681 0.95766 0.93725 0.98687 1.21189 1.01223 1.00291 0.97148 1.17151 0.92589 0.85588 0.88851 1.91650 1.92056 1.51107 1.72894 0.92074 0.92072 0.88488 0.88114 0.87208 0.90366 0.91377 0.92984 0.91168 0.93195 0.91326 0.84724 0.84668 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.11 10.57 -39.25 -0.41 -5.52 16 3 C 0.47 7.45 7.96 36.01 0.29 7.74 16 4 O -0.51 -9.16 15.73 -18.74 -0.29 -9.46 16 5 C -0.13 -2.22 6.02 -27.88 -0.17 -2.38 16 6 C 0.12 2.33 4.18 -4.04 -0.02 2.32 16 7 N -0.46 -11.15 2.57 -114.81 -0.30 -11.45 16 8 C -0.34 -9.07 9.25 -14.93 -0.14 -9.20 16 9 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 10 C 0.05 1.33 5.07 -17.47 -0.09 1.24 16 11 N -0.80 -23.32 10.22 55.50 0.57 -22.75 16 12 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.47 11.72 5.80 -10.98 -0.06 11.66 16 17 O -0.49 -13.78 10.75 5.55 0.06 -13.72 16 18 C -0.07 -1.49 1.93 -92.92 -0.18 -1.67 16 19 H 0.09 1.59 5.37 -51.93 -0.28 1.31 16 20 C -0.14 -2.58 8.69 37.16 0.32 -2.26 16 21 C -0.13 -2.45 4.59 -104.49 -0.48 -2.93 16 22 C 0.13 2.05 7.25 -39.42 -0.29 1.77 16 23 F -0.14 -2.19 16.19 2.25 0.04 -2.15 16 24 C -0.18 -2.38 10.02 -39.51 -0.40 -2.78 16 25 C -0.07 -0.87 10.04 -39.60 -0.40 -1.27 16 26 C -0.18 -2.70 10.03 -39.50 -0.40 -3.09 16 27 C 0.18 3.40 6.10 -39.43 -0.24 3.16 16 28 F -0.10 -2.22 13.20 2.25 0.03 -2.19 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.63 7.45 -51.93 -0.39 1.24 16 33 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 35 H 0.07 1.30 4.79 -51.93 -0.25 1.05 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.07 1.42 6.16 -51.93 -0.32 1.10 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.31 6.52 -51.93 -0.34 0.97 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -33.32 356.90 -6.05 -39.37 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.92 Total: 2.42 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.17 Total: 3.71 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.27 Total: -34.20 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.65 Total: -28.70 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.32 -6.05 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.996 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds