Wall clock time and date at job start Tue Mar 31 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00023 * 2 1 4 4 O 1.20828 * 119.99798 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00386 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47289 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46961 * 180.02562 * 6 5 3 8 8 C 1.37091 * 120.00448 * 86.89748 * 7 6 5 9 9 H 1.08005 * 120.00088 * 304.86018 * 8 7 6 10 10 C 1.38951 * 120.00189 * 125.13525 * 8 7 6 11 11 N 1.31408 * 119.99811 * 335.77914 * 10 8 7 12 12 Si 1.86802 * 120.00140 * 155.78119 * 10 8 7 13 13 H 1.48499 * 109.47093 * 89.99844 * 12 10 8 14 14 H 1.48498 * 109.46868 * 209.99934 * 12 10 8 15 15 H 1.48493 * 109.47210 * 329.99794 * 12 10 8 16 16 C 1.34785 * 119.99838 * 266.89768 * 7 6 5 17 17 O 1.21294 * 119.99988 * 4.69396 * 16 7 6 18 18 C 1.50694 * 120.00013 * 184.69614 * 16 7 6 19 19 H 1.08999 * 109.47662 * 49.19578 * 18 16 7 20 20 C 1.53000 * 109.47118 * 289.19439 * 18 16 7 21 21 C 1.50699 * 109.47155 * 169.19917 * 18 16 7 22 22 C 1.38415 * 120.02826 * 59.71736 * 21 18 16 23 23 F 1.35099 * 120.01551 * 0.02562 * 22 21 18 24 24 C 1.38481 * 119.97688 * 179.74915 * 22 21 18 25 25 C 1.38213 * 120.02206 * 0.53411 * 24 22 21 26 26 C 1.38210 * 120.05109 * 359.74330 * 25 24 22 27 27 C 1.38418 * 120.02560 * 240.00030 * 21 18 16 28 28 F 1.35102 * 120.01244 * 359.97438 * 27 21 18 29 29 H 1.08998 * 109.47053 * 59.99918 * 1 2 3 30 30 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47143 * 300.00165 * 1 2 3 32 32 H 1.08994 * 109.47352 * 59.99053 * 5 3 2 33 33 H 1.09001 * 109.46701 * 299.99720 * 5 3 2 34 34 H 1.09000 * 109.47453 * 60.00078 * 6 5 3 35 35 H 1.09001 * 109.47218 * 299.99645 * 6 5 3 36 36 H 0.97004 * 119.99907 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.47301 * 66.70513 * 20 18 16 38 38 H 1.08995 * 109.47216 * 186.70488 * 20 18 16 39 39 H 1.09005 * 109.46993 * 306.70553 * 20 18 16 40 40 H 1.07996 * 119.98804 * 180.27368 * 24 22 21 41 41 H 1.07997 * 119.97296 * 179.76585 * 25 24 22 42 42 H 1.07994 * 119.98676 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4631 2.8188 -0.0023 8 6 6.1501 2.7904 -1.1883 9 1 5.9991 1.9752 -1.8805 10 6 7.0450 3.8074 -1.4974 11 7 6.9096 4.9921 -0.9450 12 14 8.4404 3.4907 -2.6982 13 1 7.9886 3.8074 -4.0768 14 1 9.5997 4.3500 -2.3475 15 1 8.8423 2.0631 -2.6247 16 6 6.1337 2.9173 1.1627 17 8 5.5334 2.8568 2.2150 18 6 7.6292 3.1027 1.1580 19 1 7.8931 3.9103 0.4752 20 6 8.3021 1.8072 0.7000 21 6 8.0971 3.4473 2.5484 22 6 7.8677 2.5697 3.5938 23 9 7.2247 1.4031 3.3682 24 6 8.3028 2.8851 4.8701 25 6 8.9560 4.0808 5.1023 26 6 9.1804 4.9605 4.0603 27 6 8.7513 4.6445 2.7822 28 9 8.9713 5.5045 1.7637 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.9557 0.7809 -0.8907 33 1 3.9564 0.7807 0.8892 34 1 3.6107 3.2365 0.8889 35 1 3.6100 3.2360 -0.8911 36 1 7.5341 5.7022 -1.1611 37 1 8.0579 1.6209 -0.3458 38 1 9.3825 1.9006 0.8096 39 1 7.9454 0.9772 1.3099 40 1 8.1278 2.1984 5.6851 41 1 9.2915 4.3277 6.0987 42 1 9.6913 5.8943 4.2428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:31 Heat of formation + Delta-G solvation = -176.629297 kcal Electronic energy + Delta-G solvation = -31164.229804 eV Core-core repulsion = 26553.135957 eV Total energy + Delta-G solvation = -4611.093846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.46299 -48.33754 -40.17186 -39.17368 -38.04062 -36.30062 -34.83334 -33.83075 -32.16451 -30.46221 -29.89149 -28.91039 -27.52616 -25.14548 -24.35241 -23.26061 -22.38535 -21.36010 -20.22593 -19.34760 -17.66906 -17.42201 -17.26571 -16.40614 -16.28319 -16.27466 -15.65088 -15.41639 -15.10482 -14.99503 -14.80420 -14.65665 -14.31340 -13.95047 -13.77642 -13.65143 -13.36918 -12.88404 -12.76512 -12.35447 -12.30217 -12.29137 -11.95465 -11.76725 -11.67277 -11.53256 -11.42389 -11.20181 -11.12592 -10.97617 -10.64891 -10.59663 -10.44144 -10.31404 -10.16368 -10.11533 -8.88418 -8.50209 -8.31381 -8.19609 -7.43727 -6.50713 -4.32174 1.37294 1.42147 2.54167 2.95606 3.06038 3.17644 3.18935 3.72429 3.96462 4.07649 4.41235 4.68446 4.76791 4.85495 4.96858 5.13440 5.16859 5.17929 5.23124 5.27238 5.48664 5.54640 5.65869 5.72498 6.00963 6.07010 6.07804 6.13305 6.24458 6.34944 6.38688 6.45429 6.47776 6.53876 6.59678 6.72576 6.89130 6.95990 7.05757 7.24524 7.34783 7.87423 8.05566 8.50634 8.82739 9.46278 9.90434 10.52033 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.004719 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.125215 B = 5931.716510 C = 7709.231186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.124 4.124 6 C 0.130 3.870 7 N -0.449 5.449 8 C -0.353 4.353 9 H 0.085 0.915 10 C 0.057 3.943 11 N -0.841 5.841 12 Si 0.892 3.108 13 H -0.274 1.274 14 H -0.276 1.276 15 H -0.261 1.261 16 C 0.526 3.474 17 O -0.596 6.596 18 C -0.077 4.077 19 H 0.142 0.858 20 C -0.140 4.140 21 C -0.126 4.126 22 C 0.166 3.834 23 F -0.119 7.119 24 C -0.180 4.180 25 C -0.074 4.074 26 C -0.178 4.178 27 C 0.133 3.867 28 F -0.125 7.125 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.275 0.725 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -5.709 5.329 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.310 3.690 4 O -0.397 6.397 5 C -0.163 4.163 6 C 0.006 3.994 7 N -0.169 5.169 8 C -0.481 4.481 9 H 0.103 0.897 10 C -0.152 4.152 11 N -0.475 5.475 12 Si 0.716 3.284 13 H -0.199 1.199 14 H -0.201 1.201 15 H -0.185 1.185 16 C 0.315 3.685 17 O -0.480 6.480 18 C -0.098 4.098 19 H 0.159 0.841 20 C -0.197 4.197 21 C -0.128 4.128 22 C 0.146 3.854 23 F -0.098 7.098 24 C -0.199 4.199 25 C -0.092 4.092 26 C -0.197 4.197 27 C 0.114 3.886 28 F -0.104 7.104 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.359 -5.247 5.772 7.918 hybrid contribution 0.310 0.150 -0.923 0.985 sum 1.668 -5.097 4.849 7.230 Atomic orbital electron populations 1.23184 0.77216 1.03141 1.02357 1.86542 1.22854 1.34276 1.84519 1.24090 0.92417 0.80910 0.71594 1.90646 1.67355 1.36301 1.45360 1.21882 0.85766 1.02920 1.05684 1.21109 0.84115 0.91314 1.02852 1.43114 1.02485 1.66071 1.05248 1.19150 1.22956 1.07565 0.98380 0.89727 1.25589 0.99385 0.93757 0.96435 1.70041 1.34626 1.00656 1.42147 0.86522 0.81492 0.79511 0.80855 1.19928 1.20089 1.18478 1.19989 0.88412 0.76797 0.83289 1.90535 1.70266 1.55460 1.31732 1.20466 0.94375 1.02789 0.92193 0.84137 1.21778 0.98464 0.95528 1.03955 1.19929 1.01400 0.93983 0.97502 1.17124 0.92770 0.82792 0.92721 1.91497 1.78591 1.44463 1.95206 1.21098 1.03626 0.99519 0.95641 1.20649 0.97332 0.92601 0.98622 1.21039 1.05377 1.02013 0.91306 1.17273 0.98766 0.87679 0.84900 1.91536 1.92378 1.68148 1.58300 0.92121 0.88536 0.92140 0.87650 0.87832 0.91160 0.90649 0.91482 0.89373 0.93584 0.92759 0.84755 0.84706 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.59 10.57 -39.26 -0.41 -6.00 16 3 C 0.47 8.33 7.96 36.00 0.29 8.61 16 4 O -0.51 -10.32 15.73 -18.75 -0.29 -10.62 16 5 C -0.12 -2.27 6.13 -27.89 -0.17 -2.44 16 6 C 0.13 2.90 4.67 -4.04 -0.02 2.88 16 7 N -0.45 -10.88 2.40 -114.81 -0.28 -11.16 16 8 C -0.35 -8.43 7.15 -14.94 -0.11 -8.54 16 9 H 0.09 1.92 7.94 -52.48 -0.42 1.51 16 10 C 0.06 1.36 3.04 -17.47 -0.05 1.30 16 11 N -0.84 -21.68 11.75 55.50 0.65 -21.03 16 12 Si 0.89 18.44 28.56 -169.99 -4.86 13.58 16 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 16 C 0.53 13.12 6.22 -10.98 -0.07 13.05 16 17 O -0.60 -15.81 13.57 5.55 0.08 -15.73 16 18 C -0.08 -1.76 1.89 -92.93 -0.18 -1.93 16 19 H 0.14 3.42 3.44 -51.93 -0.18 3.25 16 20 C -0.14 -2.80 8.56 37.16 0.32 -2.48 16 21 C -0.13 -2.62 4.51 -104.49 -0.47 -3.09 16 22 C 0.17 3.18 6.11 -39.43 -0.24 2.94 16 23 F -0.12 -2.44 13.52 2.25 0.03 -2.41 16 24 C -0.18 -2.73 10.03 -39.50 -0.40 -3.13 16 25 C -0.07 -0.98 10.04 -39.60 -0.40 -1.38 16 26 C -0.18 -2.67 10.03 -39.50 -0.40 -3.07 16 27 C 0.13 2.55 7.25 -39.43 -0.29 2.26 16 28 F -0.13 -2.57 16.19 2.25 0.04 -2.53 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.07 1.70 7.36 -51.93 -0.38 1.32 16 35 H 0.08 1.71 8.02 -51.93 -0.42 1.29 16 36 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.09 1.80 5.10 -51.93 -0.27 1.53 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.05 6.53 -51.93 -0.34 0.71 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -30.24 357.45 -5.71 -35.95 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -4.94 Total: 8.12 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.11 Total: 6.45 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.38 Total: -32.19 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.63 Total: -32.35 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.86 Total: 13.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.24 -5.71 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.682 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds