Wall clock time and date at job start Tue Mar 31 2020 23:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34239 * 117.00027 * 2 1 4 4 O 1.20820 * 119.99556 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00153 * 179.97438 * 3 2 1 6 6 C 1.50693 * 109.47017 * 180.02562 * 5 3 2 7 7 C 1.33448 * 122.71714 * 125.00215 * 6 5 3 8 8 S 1.76170 * 108.06164 * 179.97438 * 7 6 5 9 9 C 1.70966 * 90.34159 * 359.97438 * 8 7 6 10 10 N 1.39001 * 124.94088 * 180.02562 * 9 8 7 11 11 C 1.34778 * 119.99488 * 180.02562 * 10 9 8 12 12 O 1.21280 * 120.00519 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99913 * 179.97438 * 11 10 9 14 14 H 1.09005 * 109.47214 * 59.99990 * 13 11 10 15 15 C 1.53003 * 109.47255 * 300.00167 * 13 11 10 16 16 C 1.50700 * 109.47279 * 179.97438 * 13 11 10 17 17 H 1.07998 * 120.00301 * 0.02562 * 16 13 11 18 18 C 1.37881 * 120.00174 * 179.97438 * 16 13 11 19 19 N 1.31518 * 119.99595 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00255 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46753 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46877 * 120.00314 * 20 18 16 23 23 H 1.48505 * 109.47069 * 240.00495 * 20 18 16 24 24 N 1.36592 * 120.00517 * 0.02562 * 10 9 8 25 25 C 1.46901 * 111.00246 * 300.00239 * 24 10 9 26 26 C 1.46906 * 110.99857 * 63.95435 * 24 10 9 27 27 N 1.29626 * 110.11330 * 0.26380 * 9 8 7 28 28 H 1.09002 * 109.47804 * 299.99881 * 1 2 3 29 29 H 1.09005 * 109.47376 * 60.00254 * 1 2 3 30 30 H 1.09004 * 109.47369 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47120 * 60.00006 * 5 3 2 32 32 H 1.09005 * 109.46851 * 299.99907 * 5 3 2 33 33 H 1.07997 * 125.96350 * 359.97438 * 7 6 5 34 34 H 1.08997 * 109.47162 * 59.99490 * 15 13 11 35 35 H 1.09006 * 109.47297 * 180.02562 * 15 13 11 36 36 H 1.08997 * 109.46578 * 299.99461 * 15 13 11 37 37 H 0.97010 * 119.99718 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47401 * 183.95041 * 25 24 10 39 39 H 1.09001 * 109.46874 * 63.95054 * 25 24 10 40 40 H 1.09004 * 109.46970 * 303.95187 * 25 24 10 41 41 H 1.09002 * 109.46903 * 296.04468 * 26 24 10 42 42 H 1.08998 * 109.46795 * 56.05025 * 26 24 10 43 43 H 1.08995 * 109.47087 * 176.04447 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9935 2.7201 0.0011 7 6 4.8152 3.2290 0.9212 8 16 5.0539 4.9358 0.5562 9 6 4.0242 4.8000 -0.8018 10 7 3.7036 5.8411 -1.6651 11 6 2.8782 5.6219 -2.7078 12 8 2.4155 4.5162 -2.8931 13 6 2.5300 6.7507 -3.6435 14 1 3.4403 7.1345 -4.1043 15 6 1.8445 7.8709 -2.8585 16 6 1.5993 6.2456 -4.7157 17 1 1.2903 5.2108 -4.7190 18 6 1.1412 7.1049 -5.6919 19 7 1.5171 8.3652 -5.6876 20 14 -0.0131 6.4790 -7.0205 21 1 -0.2819 5.0348 -6.8024 22 1 -1.2904 7.2341 -6.9624 23 1 0.6151 6.6704 -8.3524 24 7 4.2249 7.0863 -1.4568 25 6 3.8266 7.6110 -0.1438 26 6 5.6872 7.0751 -1.5976 27 7 3.5820 3.5859 -0.9062 28 1 -0.3635 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7807 -0.8891 32 1 3.9556 0.7810 0.8909 33 1 5.2567 2.6887 1.7456 34 1 2.5180 8.2361 -2.0833 35 1 1.5923 8.6872 -3.5354 36 1 0.9343 7.4871 -2.3978 37 1 1.1951 8.9697 -6.3746 38 1 4.1963 8.6304 -0.0325 39 1 4.2485 6.9837 0.6414 40 1 2.7393 7.6084 -0.0662 41 1 6.1220 6.4440 -0.8224 42 1 5.9547 6.6822 -2.5785 43 1 6.0697 8.0906 -1.4964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892196832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:56 Heat of formation + Delta-G solvation = -2.574621 kcal Electronic energy + Delta-G solvation = -28683.734285 eV Core-core repulsion = 24666.321153 eV Total energy + Delta-G solvation = -4017.413132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72820 -40.23403 -38.90062 -37.19603 -36.28317 -33.75072 -32.77160 -31.31903 -30.29797 -28.70259 -27.83078 -27.13407 -25.25730 -24.93884 -23.83559 -22.19519 -21.32816 -20.20886 -18.62537 -17.95284 -17.58411 -16.85580 -16.52916 -16.17133 -16.05107 -15.77620 -15.75428 -14.77035 -14.56288 -14.40833 -14.19063 -13.76709 -13.50442 -13.42362 -13.16129 -12.98365 -12.61446 -12.51536 -12.23317 -12.15936 -12.03201 -11.84699 -11.49863 -11.26178 -10.94595 -10.72988 -10.64032 -10.46694 -10.39773 -10.21796 -9.99375 -9.92327 -9.52174 -9.03982 -8.95355 -8.80797 -8.49971 -8.22346 -7.86257 -5.95650 -3.98894 0.87372 1.14715 1.70129 2.37245 2.56932 2.61331 3.15063 3.36792 3.43983 3.53533 3.74354 4.02152 4.38659 4.53700 4.86466 4.96467 5.09173 5.10546 5.16074 5.21370 5.28386 5.29714 5.34329 5.37074 5.38042 5.52726 5.59531 5.81618 5.83313 5.94740 6.28140 6.45694 6.56251 6.89860 7.05427 7.12942 7.18100 7.57632 7.72945 7.89397 7.91817 8.08121 8.26237 8.48534 9.07088 9.11019 9.65688 11.11291 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004613 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.330489 B = 6068.447642 C = 8439.443072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.457 3.543 4 O -0.472 6.472 5 C -0.032 4.032 6 C 0.107 3.893 7 C -0.297 4.297 8 S 0.091 5.909 9 C 0.269 3.731 10 N -0.380 5.380 11 C 0.536 3.464 12 O -0.466 6.466 13 C 0.057 3.943 14 H 0.059 0.941 15 C -0.133 4.133 16 C -0.505 4.505 17 H 0.072 0.928 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.274 5.274 25 C -0.012 4.012 26 C -0.012 4.012 27 N -0.455 5.455 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.175 0.825 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -8.008 16.404 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.297 3.703 4 O -0.356 6.356 5 C -0.072 4.072 6 C -0.026 4.026 7 C -0.437 4.437 8 S 0.343 5.657 9 C -0.100 4.100 10 N -0.202 5.202 11 C 0.326 3.674 12 O -0.329 6.329 13 C 0.036 3.964 14 H 0.077 0.923 15 C -0.191 4.191 16 C -0.544 4.544 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.211 1.211 24 N -0.090 5.090 25 C -0.160 4.160 26 C -0.160 4.160 27 N -0.175 5.175 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.192 0.808 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.574 -7.147 15.700 19.264 hybrid contribution -0.602 -1.450 0.071 1.572 sum 7.972 -8.597 15.772 19.652 Atomic orbital electron populations 1.23219 0.76355 1.03282 1.02777 1.86444 1.23439 1.33619 1.84937 1.23335 0.91611 0.81570 0.73790 1.90781 1.66523 1.35956 1.42307 1.19765 0.88822 0.92093 1.06532 1.19345 0.96270 0.95377 0.91646 1.26553 1.11595 0.97839 1.07741 1.83859 1.48163 1.08723 1.24971 1.25109 0.97467 0.92103 0.95351 1.46538 1.46557 1.00978 1.26141 1.22789 0.74264 0.92282 0.78084 1.90684 1.47632 1.25974 1.68623 1.18720 0.98135 0.88888 0.90692 0.92330 1.21803 0.97704 1.00578 0.99040 1.21265 1.27319 0.97079 1.08708 0.91001 1.24893 0.96478 0.94811 0.97767 1.69907 1.45175 1.03709 1.34430 0.86443 0.80505 0.79244 0.81337 1.19642 1.21064 1.21058 1.63662 1.10850 1.03180 1.31303 1.23257 1.03842 1.00970 0.87969 1.23223 0.86164 1.03626 1.03031 1.66297 1.24892 0.99449 1.26893 0.92154 0.91632 0.88318 0.85994 0.86252 0.80791 0.94365 0.89197 0.96093 0.93113 0.88391 0.93978 0.89399 0.94035 0.89620 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.55 101.05 1.07 1.48 16 2 O -0.37 -4.85 10.57 -39.28 -0.42 -5.27 16 3 C 0.46 7.10 7.92 36.01 0.29 7.39 16 4 O -0.47 -9.59 15.19 -18.75 -0.28 -9.87 16 5 C -0.03 -0.39 6.30 -29.04 -0.18 -0.57 16 6 C 0.11 1.67 5.64 -84.20 -0.47 1.20 16 7 C -0.30 -3.76 11.05 29.06 0.32 -3.44 16 8 S 0.09 1.21 17.23 -107.50 -1.85 -0.64 16 9 C 0.27 5.05 7.00 -87.35 -0.61 4.44 16 10 N -0.38 -7.57 2.51 -13.07 -0.03 -7.61 16 11 C 0.54 13.26 7.07 -10.99 -0.08 13.18 16 12 O -0.47 -13.15 14.09 5.56 0.08 -13.07 16 13 C 0.06 1.48 2.18 -92.92 -0.20 1.28 16 14 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 15 C -0.13 -3.18 8.80 37.16 0.33 -2.85 16 16 C -0.50 -14.73 8.38 -34.44 -0.29 -15.01 16 17 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.32 11.32 55.43 0.63 -24.70 16 20 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 21 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 N -0.27 -4.39 2.88 -128.55 -0.37 -4.76 16 25 C -0.01 -0.15 8.41 60.07 0.50 0.35 16 26 C -0.01 -0.15 9.46 60.07 0.57 0.42 16 27 N -0.45 -9.26 7.78 -11.28 -0.09 -9.34 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.12 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.04 0.77 4.70 -51.93 -0.24 0.52 16 35 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.51 4.88 -36.63 -0.18 0.33 16 40 H 0.09 1.27 7.71 -51.93 -0.40 0.87 16 41 H 0.04 0.48 5.30 -46.13 -0.24 0.23 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -37.36 363.57 -6.25 -43.61 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.52 Total: -0.59 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 1.14 Total: 9.49 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.14 Total: -46.41 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.62 Total: -28.21 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.85 Total: -0.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.36 -6.25 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892196832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.036 kcal (2) G-P(sol) polarization free energy of solvation -37.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds