Wall clock time and date at job start Tue Mar 31 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99909 * 2 1 4 4 O 1.20824 * 119.99603 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00188 * 179.97438 * 3 2 1 6 6 C 1.50693 * 109.47023 * 180.02562 * 5 3 2 7 7 C 1.33446 * 122.71866 * 125.01945 * 6 5 3 8 8 S 1.76172 * 108.06516 * 179.72747 * 7 6 5 9 9 C 1.70973 * 90.33731 * 0.29727 * 8 7 6 10 10 N 1.39001 * 124.93966 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99488 * 179.69901 * 10 9 8 12 12 O 1.21280 * 120.00519 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99913 * 179.97438 * 11 10 9 14 14 H 1.08999 * 109.47338 * 299.99934 * 13 11 10 15 15 C 1.53003 * 109.47254 * 59.99966 * 13 11 10 16 16 C 1.50700 * 109.47279 * 179.97438 * 13 11 10 17 17 H 1.07998 * 120.00301 * 0.02562 * 16 13 11 18 18 C 1.37881 * 120.00174 * 179.97438 * 16 13 11 19 19 N 1.31518 * 119.99595 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00255 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47042 * 90.00054 * 20 18 16 22 22 H 1.48499 * 109.47103 * 210.00231 * 20 18 16 23 23 H 1.48498 * 109.46685 * 330.00364 * 20 18 16 24 24 N 1.36592 * 120.00517 * 359.69511 * 10 9 8 25 25 C 1.46901 * 111.00246 * 300.00239 * 24 10 9 26 26 C 1.46906 * 110.99857 * 63.95435 * 24 10 9 27 27 N 1.29622 * 110.11279 * 359.69587 * 9 8 7 28 28 H 1.09004 * 109.47247 * 60.00296 * 1 2 3 29 29 H 1.09003 * 109.46863 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47497 * 299.99965 * 1 2 3 31 31 H 1.09000 * 109.47061 * 59.99855 * 5 3 2 32 32 H 1.09004 * 109.47059 * 300.00164 * 5 3 2 33 33 H 1.08006 * 125.96380 * 359.93200 * 7 6 5 34 34 H 1.08994 * 109.47402 * 59.99740 * 15 13 11 35 35 H 1.08998 * 109.47252 * 180.02562 * 15 13 11 36 36 H 1.09002 * 109.46995 * 299.99885 * 15 13 11 37 37 H 0.97010 * 119.99718 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.47401 * 183.95041 * 25 24 10 39 39 H 1.09001 * 109.46874 * 63.95054 * 25 24 10 40 40 H 1.09004 * 109.46970 * 303.95187 * 25 24 10 41 41 H 1.09002 * 109.46903 * 296.04468 * 26 24 10 42 42 H 1.08998 * 109.46795 * 56.05025 * 26 24 10 43 43 H 1.08995 * 109.47087 * 176.04447 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9935 2.7201 0.0011 7 6 4.8154 3.2290 0.9210 8 16 5.0597 4.9342 0.5520 9 6 4.0238 4.8001 -0.8016 10 7 3.7031 5.8412 -1.6649 11 6 2.8778 5.6219 -2.7076 12 8 2.4154 4.5162 -2.8930 13 6 2.5297 6.7508 -3.6433 14 1 2.0411 7.5487 -3.0841 15 6 3.8073 7.2897 -4.2901 16 6 1.5990 6.2456 -4.7156 17 1 1.2902 5.2107 -4.7190 18 6 1.1410 7.1048 -5.6918 19 7 1.5166 8.3652 -5.6874 20 14 -0.0131 6.4788 -7.0206 21 1 -1.4192 6.6380 -6.5702 22 1 0.1986 7.2574 -8.2672 23 1 0.2638 5.0432 -7.2805 24 7 4.2242 7.0865 -1.4564 25 6 3.8256 7.6111 -0.1435 26 6 5.6865 7.0755 -1.5970 27 7 3.5857 3.5849 -0.9088 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7807 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 5.2567 2.6888 1.7456 34 1 4.2959 6.4919 -4.8492 35 1 3.5555 8.1064 -4.9665 36 1 4.4807 7.6550 -3.5147 37 1 1.1947 8.9696 -6.3745 38 1 4.1951 8.6305 -0.0320 39 1 4.2475 6.9838 0.6417 40 1 2.7383 7.6082 -0.0660 41 1 6.1213 6.4445 -0.8218 42 1 5.9542 6.6828 -2.5779 43 1 6.0689 8.0912 -1.4957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892196833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:00 Heat of formation + Delta-G solvation = -2.029790 kcal Electronic energy + Delta-G solvation = -28665.892553 eV Core-core repulsion = 24648.503047 eV Total energy + Delta-G solvation = -4017.389506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73024 -40.23715 -38.90374 -37.19485 -36.28442 -33.76004 -32.77062 -31.31639 -30.31894 -28.70166 -27.83784 -27.13558 -25.25030 -24.95715 -23.81951 -22.20490 -21.33064 -20.20638 -18.62949 -17.94927 -17.58513 -16.85933 -16.52174 -16.20250 -15.99955 -15.79422 -15.77114 -14.73489 -14.61530 -14.42413 -14.18300 -13.74851 -13.53946 -13.35318 -13.24694 -12.94104 -12.64180 -12.49590 -12.28853 -12.11636 -12.03626 -11.85808 -11.41274 -11.32892 -10.92563 -10.73188 -10.67852 -10.44812 -10.39649 -10.22681 -9.99141 -9.92277 -9.52393 -9.04636 -8.95325 -8.82531 -8.49823 -8.22250 -7.86307 -5.95531 -3.98838 0.87436 1.14667 1.70188 2.37035 2.56606 2.61475 3.15068 3.38505 3.43704 3.51722 3.74387 4.02160 4.38586 4.53637 4.86403 4.96376 5.09217 5.10404 5.16046 5.21263 5.28407 5.29700 5.34341 5.37185 5.37999 5.52563 5.59499 5.81653 5.83350 5.94716 6.28064 6.45508 6.56297 6.88109 7.04866 7.10852 7.15679 7.57563 7.72647 7.89181 7.91275 8.07866 8.25837 8.48449 9.06856 9.10880 9.65663 11.11417 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.004608 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.755597 B = 6075.066175 C = 8512.347872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.457 3.543 4 O -0.472 6.472 5 C -0.032 4.032 6 C 0.107 3.893 7 C -0.297 4.297 8 S 0.091 5.909 9 C 0.269 3.731 10 N -0.380 5.380 11 C 0.536 3.464 12 O -0.466 6.466 13 C 0.057 3.943 14 H 0.059 0.941 15 C -0.134 4.134 16 C -0.506 4.506 17 H 0.071 0.929 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 N -0.274 5.274 25 C -0.012 4.012 26 C -0.012 4.012 27 N -0.455 5.455 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.175 0.825 34 H 0.020 0.980 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -8.087 16.161 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.297 3.703 4 O -0.356 6.356 5 C -0.072 4.072 6 C -0.026 4.026 7 C -0.437 4.437 8 S 0.343 5.657 9 C -0.100 4.100 10 N -0.202 5.202 11 C 0.326 3.674 12 O -0.329 6.329 13 C 0.036 3.964 14 H 0.077 0.923 15 C -0.192 4.192 16 C -0.544 4.544 17 H 0.089 0.911 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 N -0.090 5.090 25 C -0.161 4.161 26 C -0.161 4.161 27 N -0.176 5.176 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.192 0.808 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.903 -7.224 15.446 19.236 hybrid contribution -0.629 -1.458 0.092 1.591 sum 8.274 -8.682 15.537 19.627 Atomic orbital electron populations 1.23220 0.76350 1.03284 1.02779 1.86445 1.23443 1.33616 1.84931 1.23335 0.91611 0.81568 0.73775 1.90780 1.66527 1.35962 1.42331 1.19765 0.88821 0.92093 1.06536 1.19340 0.96347 0.95392 0.91541 1.26554 1.11502 0.97901 1.07772 1.83861 1.47650 1.08882 1.25332 1.25105 0.97462 0.92063 0.95376 1.46536 1.46596 1.00992 1.26088 1.22785 0.74281 0.92409 0.77930 1.90684 1.47758 1.25956 1.68526 1.18714 0.95715 0.90331 0.91679 0.92290 1.21833 0.95785 1.01471 1.00124 1.21221 1.26588 0.97224 1.09412 0.91059 1.24890 0.96461 0.94803 0.97767 1.69896 1.44795 1.03707 1.34835 0.86489 0.81048 0.78981 0.80918 1.20709 1.21287 1.19825 1.63657 1.11057 1.03249 1.31059 1.23253 1.03695 1.01006 0.88126 1.23245 0.86032 1.03643 1.03144 1.66291 1.25098 0.99396 1.26772 0.91629 0.88319 0.92150 0.85992 0.86248 0.80789 0.96085 0.89164 0.94350 0.93054 0.88409 0.93949 0.89605 0.94078 0.89313 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -4.84 10.57 -39.27 -0.41 -5.26 16 3 C 0.46 7.10 7.92 36.00 0.29 7.38 16 4 O -0.47 -9.57 15.20 -18.75 -0.28 -9.85 16 5 C -0.03 -0.39 6.30 -29.04 -0.18 -0.57 16 6 C 0.11 1.67 5.63 -84.20 -0.47 1.20 16 7 C -0.30 -3.76 11.05 29.06 0.32 -3.44 16 8 S 0.09 1.21 17.23 -107.50 -1.85 -0.64 16 9 C 0.27 5.05 7.00 -87.35 -0.61 4.44 16 10 N -0.38 -7.58 2.51 -13.07 -0.03 -7.61 16 11 C 0.54 13.27 7.07 -10.99 -0.08 13.19 16 12 O -0.47 -13.15 14.09 5.56 0.08 -13.07 16 13 C 0.06 1.48 2.19 -92.92 -0.20 1.28 16 14 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 15 C -0.13 -3.15 8.80 37.16 0.33 -2.82 16 16 C -0.51 -14.75 8.37 -34.44 -0.29 -15.04 16 17 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 20 Si 0.90 22.32 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 24 N -0.27 -4.40 3.03 -128.55 -0.39 -4.79 16 25 C -0.01 -0.16 9.40 60.07 0.56 0.41 16 26 C -0.01 -0.15 8.34 60.07 0.50 0.35 16 27 N -0.45 -9.26 7.79 -11.28 -0.09 -9.35 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.12 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 36 H 0.04 0.75 4.29 -51.93 -0.22 0.53 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.51 4.90 -36.97 -0.18 0.33 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.48 5.28 -45.70 -0.24 0.23 16 42 H 0.09 1.23 7.45 -51.93 -0.39 0.85 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -37.30 362.93 -6.25 -43.56 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.48 Total: -0.54 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 1.13 Total: 9.50 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.12 Total: -46.46 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.62 Total: -28.18 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.85 Total: -0.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.30 -6.25 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892196833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.528 kcal (2) G-P(sol) polarization free energy of solvation -37.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds