Wall clock time and date at job start Tue Mar 31 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81405 * 109.47151 * 2 1 4 4 O 1.42096 * 108.57788 * 65.50803 * 3 2 1 5 5 O 1.42102 * 108.57452 * 294.48616 * 3 2 1 6 6 C 1.81404 * 101.92007 * 180.02562 * 3 2 1 7 7 C 1.53496 * 114.20445 * 184.99834 * 6 3 2 8 8 N 1.47069 * 87.98429 * 139.65038 * 7 6 3 9 9 C 1.34775 * 136.05603 * 152.83929 * 8 7 6 10 10 O 1.21603 * 120.00054 * 0.02562 * 9 8 7 11 11 C 1.47429 * 120.00109 * 180.02562 * 9 8 7 12 12 C 1.41289 * 126.41362 * 0.11646 * 11 9 8 13 13 N 1.30449 * 108.02172 * 180.26709 * 12 11 9 14 14 N 1.39932 * 108.89369 * 359.77445 * 13 12 11 15 15 C 1.46504 * 125.75157 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47391 * 270.02648 * 15 14 13 17 17 H 1.08005 * 119.99554 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00346 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99952 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46962 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46754 * 120.00254 * 20 18 16 23 23 H 1.48497 * 109.47186 * 240.00169 * 20 18 16 24 24 C 1.34255 * 108.49591 * 359.97438 * 14 13 12 25 25 C 1.50703 * 126.29135 * 179.97438 * 24 14 13 26 26 C 1.47060 * 87.88559 * 333.10105 * 8 7 6 27 27 H 1.08996 * 109.47099 * 60.00354 * 1 2 3 28 28 H 1.09005 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47348 * 300.00567 * 1 2 3 30 30 H 1.08990 * 109.47272 * 239.99397 * 2 1 3 31 31 H 1.09005 * 109.46545 * 119.99593 * 2 1 3 32 32 H 1.09000 * 113.28032 * 51.93022 * 6 3 2 33 33 H 1.09006 * 113.46875 * 24.87319 * 7 6 3 34 34 H 1.08998 * 113.46914 * 254.43359 * 7 6 3 35 35 H 1.07999 * 125.98857 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.46833 * 30.02062 * 15 14 13 37 37 H 1.08996 * 109.47495 * 150.02102 * 15 14 13 38 38 H 0.97002 * 120.00041 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.47152 * 90.02639 * 25 24 14 40 40 H 1.09001 * 109.46980 * 330.02740 * 25 24 14 41 41 H 1.09004 * 109.47113 * 210.02721 * 25 24 14 42 42 H 1.09001 * 113.46981 * 141.68100 * 26 8 7 43 43 H 1.08997 * 113.46966 * 272.11865 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7591 2.3233 1.2257 5 8 1.7592 2.3232 -1.2258 6 6 3.9330 1.4719 -0.0008 7 6 4.7402 2.7718 0.1210 8 7 5.6551 2.0579 1.0244 9 6 6.9536 2.1608 1.3704 10 8 7.6480 3.0277 0.8753 11 6 7.5323 1.2224 2.3493 12 6 6.8548 0.1691 3.0032 13 7 7.7037 -0.4271 3.7942 14 7 8.9477 0.2036 3.6820 15 6 10.1645 -0.1680 4.4084 16 6 10.2258 0.5925 5.7079 17 1 9.4374 1.2838 5.9667 18 6 11.2882 0.4057 6.5666 19 7 12.2485 -0.4357 6.2512 20 14 11.3645 1.3489 8.1772 21 1 10.1715 2.2256 8.2944 22 1 11.3874 0.3906 9.3113 23 1 12.5948 2.1800 8.2064 24 6 8.8382 1.2067 2.7964 25 6 9.9372 2.1473 2.3737 26 6 4.5313 1.1781 1.3790 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8901 32 1 4.2786 0.8034 -0.7893 33 1 4.1923 3.5790 0.6073 34 1 5.2073 3.0819 -0.8137 35 1 5.8153 -0.0938 2.8740 36 1 10.1523 -1.2383 4.6140 37 1 11.0377 0.0758 3.8032 38 1 12.9958 -0.5674 6.8555 39 1 10.4595 1.7319 1.5119 40 1 10.6402 2.2778 3.1964 41 1 9.5067 3.1126 2.1070 42 1 4.8212 0.1357 1.5118 43 1 3.9273 1.5564 2.2036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897907736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:13 Heat of formation + Delta-G solvation = 10.395891 kcal Electronic energy + Delta-G solvation = -27270.213784 eV Core-core repulsion = 23253.363096 eV Total energy + Delta-G solvation = -4016.850688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03690 -40.10475 -37.61551 -37.32658 -36.46269 -33.96448 -33.64358 -32.22704 -31.32366 -30.29681 -27.60754 -26.72167 -26.40031 -24.84003 -23.62911 -23.05121 -21.19130 -19.76243 -19.27338 -18.72150 -17.88848 -17.10280 -16.80100 -16.71328 -16.42300 -15.79574 -15.37591 -14.95257 -14.85520 -14.69654 -14.29792 -13.99874 -13.82942 -13.56358 -13.26350 -13.09373 -12.97712 -12.86601 -12.63451 -12.52109 -12.50551 -12.39986 -12.12842 -12.04000 -11.92031 -11.54371 -11.40522 -11.25093 -11.13457 -10.94847 -10.84511 -10.40305 -10.24314 -9.96453 -9.53071 -8.92052 -8.75623 -8.66038 -8.01674 -6.37878 -4.45996 -0.53233 2.05395 2.19950 2.60247 2.73082 2.95063 3.14608 3.22611 3.24928 3.29894 3.34937 3.71016 3.76575 4.08621 4.13912 4.21107 4.33389 4.45808 4.68516 4.71616 4.89586 4.92464 4.97383 5.10350 5.14117 5.18468 5.22884 5.29907 5.44558 5.46234 5.60269 5.71778 5.94772 6.03463 6.44584 6.51221 6.71424 6.84160 7.07600 7.51192 7.63584 7.70847 7.72577 8.26472 8.40689 8.60103 9.21477 10.70327 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.002341 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.001787 B =11958.711649 C =12443.071609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.610 4.610 3 S 2.426 3.574 4 O -0.927 6.927 5 O -0.932 6.932 6 C -0.637 4.637 7 C 0.145 3.855 8 N -0.639 5.639 9 C 0.636 3.364 10 O -0.545 6.545 11 C -0.329 4.329 12 C 0.052 3.948 13 N -0.293 5.293 14 N -0.312 5.312 15 C 0.250 3.750 16 C -0.541 4.541 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.169 3.831 25 C -0.099 4.099 26 C 0.126 3.874 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.177 0.823 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.269 0.731 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.560 -0.207 -13.931 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.739 4.739 3 S 2.606 3.394 4 O -0.924 6.924 5 O -0.929 6.929 6 C -0.744 4.744 7 C 0.021 3.979 8 N -0.377 5.377 9 C 0.431 3.569 10 O -0.423 6.423 11 C -0.344 4.344 12 C -0.135 4.135 13 N -0.113 5.113 14 N -0.089 5.089 15 C 0.133 3.867 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.031 3.969 25 C -0.157 4.157 26 C 0.002 3.998 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.183 0.817 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.193 0.807 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.897 -0.040 -13.095 22.991 hybrid contribution 0.407 0.036 0.335 0.528 sum -18.490 -0.003 -12.760 22.466 Atomic orbital electron populations 1.21532 0.90249 1.05054 1.03796 1.30162 1.07503 1.24278 1.12006 1.07998 0.77232 0.78587 0.75558 1.93619 1.80220 1.73207 1.45398 1.93602 1.80476 1.73301 1.45510 1.32412 1.24496 1.09419 1.08122 1.22367 0.88223 0.91168 0.96121 1.49142 1.07270 1.35018 1.46242 1.16870 0.78071 0.82563 0.79439 1.90724 1.58802 1.37034 1.55785 1.19496 0.94699 1.07220 1.13007 1.23941 0.99385 0.94658 0.95480 1.77148 0.90383 1.21620 1.22159 1.49407 1.09853 1.20951 1.28666 1.19888 0.76385 0.98721 0.91667 1.21287 1.08138 1.25754 1.02777 0.91561 1.24929 0.94845 0.95152 0.98733 1.69920 1.10483 1.34705 1.37525 0.86262 0.78322 0.79636 0.82274 1.19481 1.20537 1.20510 1.21467 0.95321 0.90233 0.89852 1.20638 0.95229 0.97859 1.01979 1.22757 0.86666 0.98242 0.92146 0.90862 0.89892 0.90674 0.84774 0.84506 0.81704 0.88766 0.88351 0.80655 0.92426 0.92481 0.92118 0.90384 0.89701 0.88609 0.88201 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.92 37.16 0.37 -0.25 16 2 C -0.61 -2.03 6.53 37.16 0.24 -1.79 16 3 S 2.43 15.66 4.74 -107.50 -0.51 15.15 16 4 O -0.93 -8.96 17.28 -57.83 -1.00 -9.96 16 5 O -0.93 -9.15 18.10 -57.83 -1.05 -10.19 16 6 C -0.64 -3.93 4.50 -26.35 -0.12 -4.05 16 7 C 0.15 1.39 8.23 -8.51 -0.07 1.32 16 8 N -0.64 -8.04 3.69 -186.70 -0.69 -8.73 16 9 C 0.64 10.79 8.06 -12.52 -0.10 10.69 16 10 O -0.55 -10.59 15.61 5.27 0.08 -10.51 16 11 C -0.33 -6.00 6.13 -105.07 -0.64 -6.64 16 12 C 0.05 0.89 11.14 -16.98 -0.19 0.70 16 13 N -0.29 -6.15 12.50 30.86 0.39 -5.77 16 14 N -0.31 -6.94 3.56 -57.77 -0.21 -7.14 16 15 C 0.25 6.12 5.78 -5.19 -0.03 6.09 16 16 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 16 17 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 20 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 25 C -0.10 -1.77 9.35 36.01 0.34 -1.43 16 26 C 0.13 1.02 6.66 -8.65 -0.06 0.96 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.14 0.20 8.14 -51.92 -0.42 -0.23 16 32 H 0.17 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.18 2.11 5.22 -52.49 -0.27 1.84 16 36 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 41 H 0.10 1.69 6.48 -51.93 -0.34 1.36 16 42 H 0.10 0.61 6.16 -51.93 -0.32 0.29 16 43 H 0.11 0.77 7.43 -51.93 -0.39 0.39 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -36.68 375.89 -8.74 -45.42 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.88 Total: -1.39 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.25 Total: -4.60 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.23 Total: -45.18 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -1.96 Total: -30.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 15.66 SS G_CDS: -0.51 Total: 15.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.68 -8.74 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897907736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.812 kcal (2) G-P(sol) polarization free energy of solvation -36.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds