Wall clock time and date at job start Tue Mar 31 2020 22:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35949 * 117.00194 * 2 1 4 4 C 1.38013 * 119.99854 * 0.02562 * 3 2 1 5 5 C 1.40091 * 119.83243 * 179.97438 * 4 3 2 6 6 C 1.46773 * 120.08276 * 180.02562 * 5 4 3 7 7 C 1.35418 * 119.99758 * 223.15832 * 6 5 4 8 8 C 1.41881 * 127.04102 * 8.45309 * 7 6 5 9 9 O 1.21801 * 125.86677 * 0.02950 * 8 7 6 10 10 C 1.47748 * 108.26785 * 180.02562 * 8 7 6 11 11 N 1.32279 * 142.53152 * 179.97438 * 10 8 7 12 12 C 1.32527 * 109.88237 * 180.02562 * 11 10 8 13 13 N 1.31122 * 109.24523 * 0.02562 * 12 11 10 14 14 N 1.34971 * 109.95827 * 0.02562 * 10 8 7 15 15 C 1.46409 * 109.36705 * 359.72540 * 14 10 8 16 16 H 1.09006 * 109.92546 * 119.61460 * 15 14 10 17 17 C 1.53006 * 110.17961 * 241.09944 * 15 14 10 18 18 C 1.40145 * 119.82790 * 359.97388 * 5 4 3 19 19 C 1.37585 * 119.99822 * 0.02895 * 18 5 4 20 20 C 1.39116 * 120.16344 * 359.97438 * 19 18 5 21 21 O 1.35568 * 119.91246 * 180.02562 * 20 19 18 22 22 C 1.34712 * 117.00127 * 354.37994 * 21 20 19 23 23 H 1.08001 * 120.00024 * 5.07059 * 22 21 20 24 24 C 1.38777 * 120.00380 * 185.06974 * 22 21 20 25 25 N 1.31477 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00212 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.46838 * 59.99982 * 26 24 22 28 28 H 1.48502 * 109.47074 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.46987 * 300.00149 * 26 24 22 30 30 H 1.09007 * 109.47058 * 300.00354 * 1 2 3 31 31 H 1.08996 * 109.47197 * 59.99679 * 1 2 3 32 32 H 1.09002 * 109.47699 * 180.02562 * 1 2 3 33 33 H 1.07999 * 120.08204 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.00279 * 43.14997 * 6 5 4 35 35 H 1.08002 * 125.37623 * 180.02562 * 12 11 10 36 36 H 1.09008 * 109.46809 * 177.13435 * 17 15 14 37 37 H 1.08999 * 109.47050 * 297.13415 * 17 15 14 38 38 H 1.08995 * 109.46716 * 57.13888 * 17 15 14 39 39 H 1.08005 * 119.99954 * 180.30204 * 18 5 4 40 40 H 1.07997 * 119.91678 * 179.97438 * 19 18 5 41 41 H 0.96998 * 119.99857 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2945 2.3688 0.0005 5 6 1.9342 3.6151 0.0011 6 6 1.1402 4.8495 0.0022 7 6 1.4931 5.8823 -0.7995 8 6 2.4883 5.8779 -1.8107 9 8 3.1887 4.9301 -2.1186 10 6 2.5290 7.2204 -2.4263 11 7 3.1452 7.9305 -3.3568 12 6 2.6545 9.1613 -3.3832 13 7 1.7158 9.2719 -2.4744 14 7 1.6165 8.0239 -1.8401 15 6 0.9042 7.2743 -0.8036 16 1 1.0551 7.7472 0.1668 17 6 -0.5892 7.2107 -1.1304 18 6 3.3341 3.6801 0.0016 19 6 4.0766 2.5218 0.0010 20 6 3.4411 1.2843 0.0004 21 8 4.1777 0.1461 0.0004 22 6 5.5129 0.2817 -0.1166 23 1 5.9572 1.2660 -0.1224 24 6 6.3174 -0.8435 -0.2297 25 7 5.7764 -2.0418 -0.2231 26 14 8.1688 -0.6555 -0.3912 27 1 8.7011 0.0476 0.8038 28 1 8.7955 -1.9978 -0.4952 29 1 8.4818 0.1333 -1.6098 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2159 2.3138 0.0014 34 1 0.2745 4.9342 0.6423 35 1 2.9769 9.9488 -4.0483 36 1 -1.1001 6.6079 -0.3795 37 1 -1.0042 8.2186 -1.1311 38 1 -0.7271 6.7602 -2.1133 39 1 3.8302 4.6395 0.0070 40 1 5.1553 2.5735 0.0010 41 1 6.3387 -2.8282 -0.3017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905079341.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:06 Heat of formation + Delta-G solvation = 78.650401 kcal Electronic energy + Delta-G solvation = -28735.372269 eV Core-core repulsion = 24586.037367 eV Total energy + Delta-G solvation = -4149.334902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.77730 -39.97101 -39.28005 -37.75100 -36.88816 -36.29165 -32.89199 -32.23681 -31.57319 -30.53655 -29.71265 -28.70710 -26.88036 -25.89359 -25.09126 -24.61611 -22.13419 -21.77051 -21.07817 -20.62683 -19.19242 -18.26754 -17.70355 -16.84104 -16.50103 -16.26524 -15.96391 -15.42086 -15.27200 -15.13759 -14.79868 -14.64039 -14.20126 -14.14099 -13.88214 -13.75872 -13.64372 -13.50168 -13.14167 -12.69691 -12.53452 -12.22662 -12.03418 -11.86738 -11.62754 -11.59282 -11.27095 -11.05377 -10.81064 -10.67333 -10.54971 -10.20407 -10.13861 -9.89377 -9.85521 -9.65273 -9.38032 -8.93482 -8.02864 -7.00864 -6.69234 -4.16603 0.19083 1.16003 1.67841 2.06687 2.23000 2.54304 3.04303 3.07338 3.09062 3.25256 3.30640 3.79919 3.84071 3.91884 4.33216 4.45086 4.57359 4.65661 4.79334 4.81503 4.83565 4.95848 5.05487 5.19198 5.35533 5.38813 5.46287 5.48099 5.59197 5.68961 5.75965 5.82602 5.87228 6.04556 6.16217 6.19746 6.22629 6.31350 6.42909 6.73439 6.86929 7.04058 7.18606 7.35287 7.43615 7.72348 7.89218 8.03736 8.73696 9.41528 10.45778 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.003128 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.109510 B = 8948.868927 C =10737.946853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.047 3.953 4 C -0.127 4.127 5 C -0.199 4.199 6 C 0.112 3.888 7 C -0.296 4.296 8 C 0.460 3.540 9 O -0.389 6.389 10 C 0.193 3.807 11 N -0.493 5.493 12 C 0.194 3.806 13 N -0.280 5.280 14 N -0.365 5.365 15 C 0.207 3.793 16 H 0.112 0.888 17 C -0.156 4.156 18 C -0.009 4.009 19 C -0.226 4.226 20 C 0.156 3.844 21 O -0.139 6.139 22 C -0.386 4.386 23 H 0.100 0.900 24 C 0.043 3.957 25 N -0.839 5.839 26 Si 0.946 3.054 27 H -0.266 1.266 28 H -0.275 1.275 29 H -0.265 1.265 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 14.612 1.528 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.002 3.998 4 C -0.146 4.146 5 C -0.200 4.200 6 C 0.092 3.908 7 C -0.300 4.300 8 C 0.334 3.666 9 O -0.257 6.257 10 C -0.084 4.084 11 N -0.222 5.222 12 C -0.109 4.109 13 N -0.111 5.111 14 N -0.159 5.159 15 C 0.105 3.895 16 H 0.130 0.870 17 C -0.214 4.214 18 C -0.028 4.028 19 C -0.246 4.246 20 C 0.098 3.902 21 O -0.039 6.039 22 C -0.461 4.461 23 H 0.118 0.882 24 C -0.165 4.165 25 N -0.470 5.470 26 Si 0.769 3.231 27 H -0.191 1.191 28 H -0.200 1.200 29 H -0.190 1.190 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.154 0.846 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.562 13.981 1.355 18.193 hybrid contribution 0.600 0.552 -0.209 0.842 sum -10.962 14.533 1.145 18.240 Atomic orbital electron populations 1.22902 0.80269 1.03073 1.00257 1.86239 1.19489 1.26182 1.89837 1.17927 0.89273 0.84551 1.08071 1.20656 0.98282 0.90551 1.05143 1.17921 0.92841 0.90816 1.18428 1.21871 0.92745 0.88997 0.87138 1.20619 1.07044 0.96468 1.05835 1.17974 0.83083 0.83043 0.82506 1.90868 1.38105 1.36263 1.60493 1.25937 0.91576 0.97363 0.93529 1.70303 1.28213 1.03743 1.19927 1.26282 0.92502 0.94893 0.97178 1.78168 1.22928 0.97848 1.12142 1.51543 1.28505 1.07898 1.27910 1.20341 0.92545 0.87406 0.89174 0.87026 1.22128 0.92161 1.03500 1.03567 1.20736 0.91843 0.97239 0.92987 1.20756 1.00735 0.90584 1.12530 1.18911 0.88259 0.87479 0.95559 1.83940 1.19880 1.26258 1.73794 1.21594 0.78270 0.95296 1.50964 0.88240 1.25468 1.01164 0.94060 0.95848 1.70016 1.37063 0.97947 1.41968 0.85691 0.79376 0.78324 0.79691 1.19087 1.19979 1.18968 0.93512 0.93523 0.89015 0.85903 0.84564 0.75641 0.89603 0.91121 0.91415 0.87371 0.84516 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.19 10.28 -34.18 -0.35 -6.55 16 3 C 0.05 0.96 6.70 -39.12 -0.26 0.70 16 4 C -0.13 -2.07 8.78 -38.97 -0.34 -2.41 16 5 C -0.20 -3.11 5.19 -105.04 -0.54 -3.65 16 6 C 0.11 1.23 9.62 -37.14 -0.36 0.87 16 7 C -0.30 -3.50 5.27 -104.02 -0.55 -4.04 16 8 C 0.46 7.21 6.71 -34.30 -0.23 6.98 16 9 O -0.39 -7.45 14.13 5.10 0.07 -7.38 16 10 C 0.19 3.00 8.67 -155.37 -1.35 1.66 16 11 N -0.49 -7.83 11.21 -12.54 -0.14 -7.97 16 12 C 0.19 2.41 13.00 -92.09 -1.20 1.22 16 13 N -0.28 -3.71 12.81 29.23 0.37 -3.34 16 14 N -0.37 -4.82 4.64 -53.38 -0.25 -5.07 16 15 C 0.21 2.03 4.12 -68.91 -0.28 1.75 16 16 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.16 -1.16 9.49 37.16 0.35 -0.81 16 18 C -0.01 -0.17 6.98 -39.10 -0.27 -0.44 16 19 C -0.23 -4.79 9.14 -39.49 -0.36 -5.15 16 20 C 0.16 3.68 6.67 -38.72 -0.26 3.42 16 21 O -0.14 -3.86 9.52 -13.66 -0.13 -3.99 16 22 C -0.39 -10.35 9.48 30.93 0.29 -10.06 16 23 H 0.10 2.44 5.18 -52.49 -0.27 2.17 16 24 C 0.04 1.12 5.50 -17.50 -0.10 1.02 16 25 N -0.84 -23.55 13.67 55.49 0.76 -22.79 16 26 Si 0.95 19.61 29.55 -169.99 -5.02 14.59 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 29 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 30 H 0.05 0.53 7.66 -51.92 -0.40 0.13 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.12 1.55 6.28 -52.49 -0.33 1.22 16 34 H 0.14 0.91 8.04 -52.49 -0.42 0.49 16 35 H 0.23 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.09 0.42 8.08 -51.92 -0.42 0.00 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 1.82 6.83 -52.48 -0.36 1.46 16 40 H 0.14 2.88 5.61 -52.49 -0.29 2.59 16 41 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -34.21 356.52 -7.92 -42.13 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.14 Total: 2.55 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.46 Total: -7.55 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.74 Total: -39.17 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.41 Total: -17.92 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.21 -7.92 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905079341.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.776 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds