Wall clock time and date at job start Tue Mar 31 2020 22:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35949 * 116.99909 * 2 1 4 4 C 1.38016 * 120.00163 * 359.97438 * 3 2 1 5 5 C 1.40088 * 119.83733 * 179.97438 * 4 3 2 6 6 C 1.46769 * 120.08654 * 180.02562 * 5 4 3 7 7 C 1.35415 * 120.00049 * 36.53489 * 6 5 4 8 8 C 1.41885 * 127.04319 * 187.11234 * 7 6 5 9 9 O 1.21796 * 125.86547 * 359.97438 * 8 7 6 10 10 C 1.47746 * 108.26443 * 179.97438 * 8 7 6 11 11 N 1.32280 * 142.52512 * 180.02562 * 10 8 7 12 12 C 1.32529 * 109.87931 * 179.97438 * 11 10 8 13 13 N 1.31117 * 109.24860 * 0.02562 * 12 11 10 14 14 N 1.34968 * 109.96318 * 0.02562 * 10 8 7 15 15 C 1.46413 * 109.36619 * 359.72061 * 14 10 8 16 16 H 1.09001 * 110.18703 * 241.10349 * 15 14 10 17 17 C 1.52999 * 109.92163 * 119.62116 * 15 14 10 18 18 C 1.40154 * 119.82479 * 0.02562 * 5 4 3 19 19 C 1.37576 * 119.99768 * 359.97438 * 18 5 4 20 20 C 1.39121 * 120.16364 * 359.72361 * 19 18 5 21 21 O 1.35580 * 119.91348 * 180.27453 * 20 19 18 22 22 C 1.34717 * 116.99685 * 354.37869 * 21 20 19 23 23 H 1.08000 * 119.99966 * 5.06095 * 22 21 20 24 24 C 1.38776 * 119.99569 * 185.05544 * 22 21 20 25 25 N 1.31476 * 120.00036 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99625 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47314 * 60.00646 * 26 24 22 28 28 H 1.48501 * 109.46709 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47104 * 300.00248 * 26 24 22 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47001 * 59.99694 * 1 2 3 32 32 H 1.08999 * 109.46888 * 300.00215 * 1 2 3 33 33 H 1.08000 * 120.07961 * 0.02739 * 4 3 2 34 34 H 1.07998 * 119.99945 * 216.53349 * 6 5 4 35 35 H 1.08007 * 125.37723 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.46965 * 308.12193 * 17 15 14 37 37 H 1.08997 * 109.47311 * 68.11793 * 17 15 14 38 38 H 1.08996 * 109.47346 * 188.12079 * 17 15 14 39 39 H 1.08002 * 119.99910 * 179.97438 * 18 5 4 40 40 H 1.08000 * 119.91798 * 179.97438 * 19 18 5 41 41 H 0.96999 * 119.99466 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2945 2.3688 -0.0005 5 6 1.9340 3.6152 0.0000 6 6 1.1401 4.8496 0.0000 7 6 -0.0190 4.9091 0.6977 8 6 -0.9674 5.9644 0.6911 9 8 -0.8837 6.9951 0.0475 10 6 -2.0739 5.5982 1.5991 11 7 -3.2279 6.0341 2.0768 12 6 -3.7372 5.1390 2.9109 13 7 -2.9268 4.1113 2.9898 14 7 -1.8393 4.3869 2.1462 15 6 -0.5704 3.8622 1.6382 16 1 -0.7375 2.9285 1.1011 17 6 0.4012 3.6342 2.7979 18 6 3.3341 3.6803 0.0006 19 6 4.0765 2.5220 0.0011 20 6 3.4411 1.2844 0.0069 21 8 4.1777 0.1462 0.0130 22 6 5.5129 0.2813 -0.1045 23 1 5.9572 1.2656 -0.1155 24 6 6.3174 -0.8445 -0.2111 25 7 5.7764 -2.0427 -0.1980 26 14 8.1689 -0.6572 -0.3732 27 1 8.7010 0.0523 0.8179 28 1 8.7955 -2.0001 -0.4709 29 1 8.4821 0.1248 -1.5961 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2159 2.3138 -0.0005 34 1 1.4802 5.7104 -0.5564 35 1 -4.6719 5.2404 3.4426 36 1 0.4711 4.5420 3.3971 37 1 0.0390 2.8155 3.4197 38 1 1.3855 3.3826 2.4032 39 1 3.8301 4.6397 0.0006 40 1 5.1553 2.5737 0.0011 41 1 6.3388 -2.8295 -0.2729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905079342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:10 Heat of formation + Delta-G solvation = 75.162526 kcal Electronic energy + Delta-G solvation = -28985.951363 eV Core-core repulsion = 24836.465216 eV Total energy + Delta-G solvation = -4149.486147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.81926 -40.14814 -39.40552 -37.97555 -37.37621 -36.15683 -33.04749 -32.38648 -31.63524 -30.34616 -29.77108 -29.00690 -27.18594 -26.05771 -25.21322 -24.55857 -22.29576 -21.89745 -21.21860 -20.36384 -19.49538 -18.50613 -17.73123 -16.92937 -16.68680 -16.19913 -16.08336 -15.78006 -15.43681 -15.19350 -15.00377 -14.75696 -14.22050 -14.18905 -14.08980 -13.86509 -13.77760 -13.55950 -13.07027 -12.64661 -12.55917 -12.22122 -12.04694 -11.85582 -11.79813 -11.65044 -11.43133 -11.19097 -10.99440 -10.83426 -10.70913 -10.24070 -10.17875 -10.12625 -9.90885 -9.87143 -9.50086 -9.09673 -8.25876 -7.23510 -6.87176 -4.34619 0.05309 1.07610 1.68571 1.87786 1.99676 2.49908 2.91358 2.93384 2.96663 3.16059 3.18795 3.63703 3.72075 3.92954 4.11584 4.48322 4.56297 4.61266 4.69393 4.73229 4.82290 4.86112 5.03924 5.24437 5.32966 5.35017 5.37618 5.51715 5.56036 5.65953 5.71267 5.80032 5.94539 6.00269 6.03250 6.06402 6.18743 6.19620 6.29522 6.53712 6.67496 6.82796 6.93196 7.12802 7.21430 7.52798 7.83912 7.85115 8.54644 9.20925 10.27113 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.002744 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.613130 B =10202.635620 C =10938.168508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.140 4.140 5 C -0.196 4.196 6 C 0.120 3.880 7 C -0.299 4.299 8 C 0.476 3.524 9 O -0.427 6.427 10 C 0.183 3.817 11 N -0.493 5.493 12 C 0.191 3.809 13 N -0.274 5.274 14 N -0.357 5.357 15 C 0.203 3.797 16 H 0.112 0.888 17 C -0.156 4.156 18 C -0.040 4.040 19 C -0.228 4.228 20 C 0.150 3.850 21 O -0.134 6.134 22 C -0.388 4.388 23 H 0.102 0.898 24 C 0.043 3.957 25 N -0.833 5.833 26 Si 0.948 3.052 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.265 1.265 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.228 0.772 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 8.019 2.311 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.214 6.214 3 C 0.012 3.988 4 C -0.159 4.159 5 C -0.197 4.197 6 C 0.101 3.899 7 C -0.303 4.303 8 C 0.354 3.646 9 O -0.299 6.299 10 C -0.093 4.093 11 N -0.222 5.222 12 C -0.111 4.111 13 N -0.105 5.105 14 N -0.151 5.151 15 C 0.102 3.898 16 H 0.129 0.871 17 C -0.214 4.214 18 C -0.058 4.058 19 C -0.247 4.247 20 C 0.092 3.908 21 O -0.033 6.033 22 C -0.462 4.462 23 H 0.119 0.881 24 C -0.166 4.166 25 N -0.462 5.462 26 Si 0.771 3.229 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.190 1.190 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.162 0.838 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.616 7.302 2.423 10.826 hybrid contribution 0.421 0.125 0.021 0.440 sum -7.195 7.428 2.444 10.626 Atomic orbital electron populations 1.22958 0.80023 1.03470 1.00276 1.86256 1.19613 1.26044 1.89529 1.17993 0.89313 0.84609 1.06850 1.20921 0.98422 0.90854 1.05753 1.17999 0.92946 0.90742 1.18016 1.22048 0.87271 0.95765 0.84852 1.20568 1.01561 0.98608 1.09518 1.17923 0.82357 0.86128 0.78207 1.90719 1.76044 1.25695 1.37443 1.25669 0.95840 0.88354 0.99465 1.70262 1.07374 1.30994 1.13614 1.26283 1.00448 0.87235 0.97133 1.78219 0.95360 1.23916 1.12989 1.51693 1.16727 1.16148 1.30492 1.20629 0.77873 0.96922 0.94390 0.87084 1.22119 0.99891 1.02869 0.96527 1.20867 0.91758 0.97749 0.95444 1.20810 1.00868 0.90566 1.12491 1.18926 0.88212 0.87559 0.96150 1.83952 1.19978 1.26367 1.72999 1.21621 0.78145 0.95343 1.51105 0.88071 1.25520 1.01359 0.94042 0.95685 1.70009 1.37345 0.98061 1.40834 0.85659 0.79047 0.78527 0.79676 1.18978 1.19874 1.18965 0.88638 0.93362 0.93604 0.85851 0.83765 0.75580 0.91733 0.91179 0.88433 0.86188 0.84234 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.68 10.28 -34.18 -0.35 -6.03 16 3 C 0.06 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.14 -2.05 6.76 -38.97 -0.26 -2.31 16 5 C -0.20 -2.61 4.27 -105.04 -0.45 -3.06 16 6 C 0.12 1.36 9.66 -37.14 -0.36 1.00 16 7 C -0.30 -3.69 5.26 -104.01 -0.55 -4.24 16 8 C 0.48 6.87 7.39 -34.30 -0.25 6.62 16 9 O -0.43 -6.93 17.98 5.10 0.09 -6.84 16 10 C 0.18 2.77 8.66 -155.37 -1.35 1.43 16 11 N -0.49 -7.47 11.21 -12.54 -0.14 -7.61 16 12 C 0.19 2.36 13.00 -92.10 -1.20 1.17 16 13 N -0.27 -3.82 12.81 29.23 0.37 -3.44 16 14 N -0.36 -5.04 4.62 -53.38 -0.25 -5.28 16 15 C 0.20 2.51 3.10 -68.91 -0.21 2.30 16 16 H 0.11 1.30 5.47 -51.93 -0.28 1.02 16 17 C -0.16 -1.85 9.27 37.16 0.34 -1.50 16 18 C -0.04 -0.55 9.78 -39.10 -0.38 -0.93 16 19 C -0.23 -3.97 9.14 -39.50 -0.36 -4.33 16 20 C 0.15 3.12 6.67 -38.71 -0.26 2.86 16 21 O -0.13 -3.39 9.52 -13.71 -0.13 -3.52 16 22 C -0.39 -9.41 9.48 30.93 0.29 -9.11 16 23 H 0.10 2.18 5.18 -52.49 -0.27 1.91 16 24 C 0.04 1.04 5.50 -17.50 -0.10 0.95 16 25 N -0.83 -21.92 13.67 55.49 0.76 -21.16 16 26 Si 0.95 17.88 29.55 -169.99 -5.02 12.85 16 27 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 28 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 29 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.12 1.56 3.56 -52.49 -0.19 1.38 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.23 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.19 6.01 -51.93 -0.31 0.88 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.14 2.38 5.61 -52.49 -0.29 2.09 16 41 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -30.39 353.48 -7.52 -37.90 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.82 Total: 4.82 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -4.36 Total: -7.01 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.75 Total: -37.50 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.39 Total: -16.40 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.39 -7.52 -37.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905079342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.067 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds