Wall clock time and date at job start Tue Mar 31 2020 22:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35946 * 116.99718 * 2 1 4 4 C 1.38019 * 120.00053 * 0.30230 * 3 2 1 5 5 C 1.40088 * 119.83074 * 180.25276 * 4 3 2 6 6 C 1.46781 * 120.08521 * 179.71828 * 5 4 3 7 7 C 1.35415 * 119.99789 * 321.12898 * 6 5 4 8 8 C 1.41874 * 127.04328 * 352.04032 * 7 6 5 9 9 O 1.21794 * 125.86742 * 0.02562 * 8 7 6 10 10 C 1.47753 * 108.26328 * 180.02562 * 8 7 6 11 11 N 1.32278 * 142.52494 * 180.02562 * 10 8 7 12 12 C 1.32531 * 109.88039 * 179.97438 * 11 10 8 13 13 N 1.31118 * 109.24173 * 0.02562 * 12 11 10 14 14 N 1.34971 * 109.96297 * 359.97438 * 10 8 7 15 15 C 1.46409 * 109.36742 * 0.02562 * 14 10 8 16 16 H 1.09001 * 110.05028 * 240.74229 * 15 14 10 17 17 C 1.53002 * 110.05540 * 119.30552 * 15 14 10 18 18 C 1.40148 * 119.83284 * 359.44672 * 5 4 3 19 19 C 1.37588 * 119.99295 * 0.28093 * 18 5 4 20 20 C 1.39116 * 120.16296 * 359.97438 * 19 18 5 21 21 O 1.35572 * 119.91102 * 180.02562 * 20 19 18 22 22 C 1.34715 * 117.00356 * 5.72449 * 21 20 19 23 23 H 1.08007 * 119.99546 * 354.90103 * 22 21 20 24 24 C 1.38774 * 120.00251 * 174.89916 * 22 21 20 25 25 N 1.31475 * 119.99661 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00024 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.46985 * 89.99998 * 26 24 22 28 28 H 1.48498 * 109.47086 * 209.99653 * 26 24 22 29 29 H 1.48502 * 109.47295 * 329.99914 * 26 24 22 30 30 H 1.08997 * 109.46913 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46952 * 300.00097 * 1 2 3 32 32 H 1.08998 * 109.47204 * 59.99730 * 1 2 3 33 33 H 1.07997 * 120.08681 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.99745 * 141.12111 * 6 5 4 35 35 H 1.08000 * 125.38005 * 179.97438 * 12 11 10 36 36 H 1.09002 * 109.46747 * 61.45466 * 17 15 14 37 37 H 1.08994 * 109.46749 * 181.45449 * 17 15 14 38 38 H 1.08996 * 109.46817 * 301.45180 * 17 15 14 39 39 H 1.08005 * 120.00720 * 180.25011 * 18 5 4 40 40 H 1.07996 * 119.91901 * 180.02562 * 19 18 5 41 41 H 0.97000 * 119.99480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2944 2.3688 0.0063 5 6 1.9340 3.6152 0.0009 6 6 1.1400 4.8497 0.0013 7 6 0.0028 4.9235 -0.7302 8 6 -0.4757 3.9692 -1.6647 9 8 0.0704 2.9206 -1.9569 10 6 -1.7505 4.4662 -2.2223 11 7 -2.7132 4.1598 -3.0762 12 6 -3.6258 5.1207 -3.0904 13 7 -3.2733 6.0639 -2.2505 14 7 -2.0590 5.6603 -1.6740 15 6 -1.0164 6.0397 -0.7187 16 1 -1.4436 6.1451 0.2785 17 6 -0.3622 7.3538 -1.1504 18 6 3.3340 3.6804 0.0009 19 6 4.0765 2.5220 0.0003 20 6 3.4411 1.2845 0.0003 21 8 4.1777 0.1463 0.0002 22 6 5.5127 0.2818 0.1199 23 1 5.9570 1.2662 0.1274 24 6 6.3169 -0.8435 0.2337 25 7 7.6198 -0.7112 0.3500 26 14 5.5484 -2.5460 0.2200 27 1 5.4751 -3.0448 -1.1768 28 1 6.3790 -3.4705 1.0328 29 1 4.1802 -2.4761 0.7932 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 0.2159 2.3139 0.0108 34 1 1.4626 5.6990 0.5852 35 1 -4.5183 5.1265 -3.6984 36 1 -1.1114 8.1454 -1.1633 37 1 0.4291 7.6137 -0.4474 38 1 0.0615 7.2381 -2.1479 39 1 3.8300 4.6398 0.0008 40 1 5.1552 2.5737 0.0007 41 1 8.1818 -1.4977 0.4298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905079344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:16 Heat of formation + Delta-G solvation = 81.548383 kcal Electronic energy + Delta-G solvation = -29046.072842 eV Core-core repulsion = 24896.863606 eV Total energy + Delta-G solvation = -4149.209236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.85821 -40.17008 -39.33999 -37.87451 -37.00159 -36.42542 -32.93970 -32.44853 -31.66862 -30.62014 -29.74487 -28.80288 -27.02867 -26.02836 -25.06912 -24.62856 -22.08171 -21.86189 -21.06709 -20.75833 -19.33123 -18.15811 -17.89298 -16.92075 -16.80982 -16.16923 -16.06024 -15.74559 -15.30203 -15.11711 -14.82107 -14.71548 -14.36187 -14.22793 -13.86168 -13.84741 -13.66123 -13.35138 -13.23246 -12.74324 -12.49225 -12.34177 -12.23562 -12.13065 -11.84528 -11.54662 -11.26994 -10.99218 -10.87470 -10.73303 -10.33879 -10.27990 -10.20126 -9.99114 -9.94382 -9.70450 -9.48333 -9.00485 -7.98574 -7.18869 -6.68060 -4.24445 0.06569 1.07237 1.60882 2.05089 2.05506 2.47108 3.13819 3.15508 3.18331 3.22147 3.35634 3.78367 3.84779 4.09523 4.24061 4.39050 4.50474 4.50697 4.60097 4.72275 4.75158 4.88297 4.95639 5.15533 5.31069 5.35955 5.43973 5.46221 5.56199 5.65726 5.70448 5.78317 5.83035 5.97295 6.05016 6.09898 6.13107 6.23058 6.34101 6.67335 6.79079 6.98538 7.22336 7.28755 7.42736 7.70984 7.81429 7.99208 8.64722 9.27544 10.36782 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002893 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.520975 B = 9674.737193 C =10587.508944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.048 3.952 4 C -0.090 4.090 5 C -0.192 4.192 6 C 0.114 3.886 7 C -0.299 4.299 8 C 0.460 3.540 9 O -0.394 6.394 10 C 0.191 3.809 11 N -0.493 5.493 12 C 0.194 3.806 13 N -0.279 5.279 14 N -0.364 5.364 15 C 0.207 3.793 16 H 0.113 0.887 17 C -0.156 4.156 18 C -0.043 4.043 19 C -0.221 4.221 20 C 0.166 3.834 21 O -0.180 6.180 22 C -0.385 4.385 23 H 0.113 0.887 24 C 0.068 3.932 25 N -0.858 5.858 26 Si 0.904 3.096 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.251 1.251 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.228 0.772 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.205 13.462 0.624 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.222 6.222 3 C 0.003 3.997 4 C -0.110 4.110 5 C -0.193 4.193 6 C 0.094 3.906 7 C -0.303 4.303 8 C 0.335 3.665 9 O -0.263 6.263 10 C -0.086 4.086 11 N -0.222 5.222 12 C -0.108 4.108 13 N -0.109 5.109 14 N -0.158 5.158 15 C 0.105 3.895 16 H 0.130 0.870 17 C -0.214 4.214 18 C -0.062 4.062 19 C -0.240 4.240 20 C 0.110 3.890 21 O -0.081 6.081 22 C -0.459 4.459 23 H 0.131 0.869 24 C -0.139 4.139 25 N -0.493 5.493 26 Si 0.728 3.272 27 H -0.194 1.194 28 H -0.205 1.205 29 H -0.175 1.175 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.162 0.838 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.082 12.810 0.473 19.794 hybrid contribution -0.514 -0.334 -0.163 0.635 sum -15.597 12.476 0.310 19.975 Atomic orbital electron populations 1.22937 0.79799 1.03049 1.00791 1.86148 1.19940 1.26237 1.89881 1.17948 0.89089 0.84809 1.07837 1.20795 0.98489 0.90572 1.01127 1.18037 0.92918 0.90982 1.17370 1.21938 0.87289 0.95399 0.85949 1.20600 1.02130 0.99265 1.08267 1.17972 0.80807 0.86074 0.81642 1.90847 1.57392 1.21555 1.56509 1.25899 0.98772 0.89317 0.94609 1.70299 1.02337 1.29249 1.20308 1.26289 0.99769 0.87397 0.97386 1.78178 0.94885 1.23411 1.14447 1.51551 1.15998 1.16976 1.31233 1.20349 0.82911 0.94866 0.91332 0.86970 1.22133 1.01427 0.94593 1.03277 1.20841 0.91660 0.97739 0.95924 1.20896 1.01194 0.90455 1.11450 1.18702 0.87698 0.86893 0.95719 1.83562 1.20555 1.27951 1.76080 1.20991 0.77116 0.97329 1.50457 0.86939 1.24565 0.94542 0.99942 0.94828 1.69598 1.03259 1.32340 1.44078 0.86165 0.80547 0.81158 0.79280 1.19444 1.20504 1.17499 0.89002 0.93749 0.92660 0.85986 0.84145 0.75606 0.91071 0.89510 0.91359 0.86245 0.83781 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.31 -6.32 10.28 -34.18 -0.35 -6.67 16 3 C 0.05 0.99 6.70 -39.12 -0.26 0.72 16 4 C -0.09 -1.55 5.92 -38.97 -0.23 -1.78 16 5 C -0.19 -2.84 5.34 -105.03 -0.56 -3.40 16 6 C 0.11 1.17 9.67 -37.14 -0.36 0.81 16 7 C -0.30 -3.30 5.28 -104.01 -0.55 -3.85 16 8 C 0.46 6.73 6.64 -34.30 -0.23 6.50 16 9 O -0.39 -6.97 13.47 5.11 0.07 -6.90 16 10 C 0.19 2.79 8.67 -155.36 -1.35 1.45 16 11 N -0.49 -7.38 11.21 -12.54 -0.14 -7.52 16 12 C 0.19 2.28 13.00 -92.09 -1.20 1.08 16 13 N -0.28 -3.51 12.81 29.23 0.37 -3.14 16 14 N -0.36 -4.55 4.63 -53.37 -0.25 -4.80 16 15 C 0.21 1.91 4.12 -68.91 -0.28 1.62 16 16 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.16 -1.10 9.48 37.16 0.35 -0.75 16 18 C -0.04 -0.67 9.78 -39.10 -0.38 -1.05 16 19 C -0.22 -4.29 9.14 -39.49 -0.36 -4.65 16 20 C 0.17 3.72 6.67 -38.72 -0.26 3.46 16 21 O -0.18 -4.62 8.35 -13.68 -0.11 -4.73 16 22 C -0.38 -10.18 9.94 30.93 0.31 -9.87 16 23 H 0.11 2.96 5.41 -52.48 -0.28 2.67 16 24 C 0.07 1.80 5.50 -17.51 -0.10 1.71 16 25 N -0.86 -23.23 13.96 55.49 0.77 -22.45 16 26 Si 0.90 20.92 28.62 -169.99 -4.86 16.06 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.25 -5.98 7.11 56.52 0.40 -5.58 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.59 7.64 -51.93 -0.40 0.19 16 32 H 0.05 0.85 7.45 -51.93 -0.39 0.46 16 33 H 0.12 1.95 4.49 -52.49 -0.24 1.71 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.23 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.14 2.86 5.62 -52.49 -0.29 2.57 16 41 H 0.29 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -32.51 354.11 -7.74 -40.25 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.11 Total: 1.12 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.46 Total: -6.57 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.76 Total: -37.91 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.40 Total: -18.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.51 -7.74 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905079344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.800 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds