Wall clock time and date at job start Tue Mar 31 2020 23:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.50706 * 125.90162 * 180.26330 * 4 3 2 6 6 C 1.52996 * 117.49957 * 163.83584 * 5 4 3 7 7 C 1.52999 * 117.49973 * 95.20846 * 5 4 3 8 8 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 9 9 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 10 10 S 1.76199 * 126.13062 * 359.97438 * 9 2 1 11 11 O 1.42097 * 106.40216 * 263.54714 * 10 9 2 12 12 O 1.42101 * 106.39849 * 36.46671 * 10 9 2 13 13 N 1.65601 * 107.21886 * 150.00200 * 10 9 2 14 14 C 1.47017 * 125.65083 * 269.69522 * 13 10 9 15 15 C 1.54336 * 107.26759 * 178.85233 * 14 13 10 16 16 C 1.55157 * 103.01752 * 338.14100 * 15 14 13 17 17 O 1.42902 * 111.00219 * 277.23157 * 16 15 14 18 18 C 1.50700 * 111.00517 * 153.38402 * 16 15 14 19 19 H 1.07999 * 120.00051 * 247.80649 * 18 16 15 20 20 C 1.37881 * 119.99958 * 67.80030 * 18 16 15 21 21 N 1.31509 * 120.00039 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99757 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47653 * 89.99813 * 22 20 18 24 24 H 1.48506 * 109.47015 * 209.99992 * 22 20 18 25 25 H 1.48505 * 109.46989 * 329.99457 * 22 20 18 26 26 C 1.47428 * 125.64670 * 90.00334 * 13 10 9 27 27 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 28 28 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 29 29 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 30 30 H 1.09003 * 115.54504 * 309.53926 * 5 4 3 31 31 H 1.08999 * 117.49876 * 359.97438 * 6 5 4 32 32 H 1.08998 * 117.50011 * 145.01956 * 6 5 4 33 33 H 1.08994 * 117.49721 * 214.97599 * 7 5 4 34 34 H 1.08994 * 117.49677 * 0.02562 * 7 5 4 35 35 H 1.08002 * 126.04477 * 179.82088 * 8 4 3 36 36 H 1.09007 * 109.87867 * 298.39724 * 14 13 10 37 37 H 1.09004 * 109.88433 * 59.55875 * 14 13 10 38 38 H 1.08997 * 110.84665 * 219.67643 * 15 14 13 39 39 H 1.09001 * 110.66871 * 96.52082 * 15 14 13 40 40 H 0.96700 * 114.00239 * 292.19991 * 17 16 15 41 41 H 0.96995 * 120.00082 * 180.02562 * 21 20 18 42 42 H 1.08998 * 110.36303 * 322.93199 * 26 13 10 43 43 H 1.08997 * 110.36256 * 85.24939 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 4.7496 1.6239 0.0133 6 6 6.0883 0.9903 0.3969 7 6 5.3851 1.9402 1.3686 8 6 3.5438 -0.6663 -0.0009 9 6 2.2589 -1.0911 -0.0005 10 16 1.7194 -2.7685 -0.0006 11 8 1.7429 -3.1976 1.3538 12 8 0.5526 -2.8146 -0.8104 13 7 2.8731 -3.6545 -0.7920 14 6 2.8977 -3.9351 -2.2350 15 6 4.1668 -4.7664 -2.5184 16 6 5.0792 -4.4352 -1.3079 17 8 5.7790 -3.2066 -1.5150 18 6 6.0408 -5.5622 -1.0320 19 1 5.9439 -6.1458 -0.1284 20 6 7.0444 -5.8483 -1.9331 21 7 7.1627 -5.1375 -3.0332 22 14 8.2360 -7.2457 -1.5914 23 1 7.7000 -8.5053 -2.1670 24 1 9.5502 -6.9383 -2.2109 25 1 8.4052 -7.4044 -0.1246 26 6 4.0423 -4.2978 -0.1653 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 4.7620 2.4080 -0.7437 31 1 6.0902 -0.0713 0.6441 32 1 6.9819 1.3575 -0.1079 33 1 5.8161 2.9322 1.5031 34 1 4.9248 1.5031 2.2546 35 1 4.4212 -1.2961 -0.0013 36 1 2.0103 -4.5016 -2.5176 37 1 2.9368 -3.0001 -2.7939 38 1 4.6353 -4.4533 -3.4514 39 1 3.9319 -5.8305 -2.5445 40 1 6.4389 -3.2440 -2.2208 41 1 7.8684 -5.3390 -3.6673 42 1 4.4382 -3.6699 0.6328 43 1 3.7723 -5.2801 0.2222 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907258873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:25 Heat of formation + Delta-G solvation = -8.432397 kcal Electronic energy + Delta-G solvation = -29058.367619 eV Core-core repulsion = 25040.700475 eV Total energy + Delta-G solvation = -4017.667144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27191 -38.17139 -37.24059 -37.06634 -35.85504 -34.40255 -33.01119 -32.18058 -30.51676 -29.34910 -28.37494 -26.97441 -24.94546 -23.34033 -22.64331 -21.98442 -21.50435 -19.88649 -19.65768 -18.69991 -17.80975 -17.28744 -16.94300 -16.04205 -15.77499 -15.39260 -15.07085 -15.02301 -14.58208 -14.36609 -14.17643 -13.94785 -13.42971 -13.05830 -12.87882 -12.76726 -12.52860 -12.22476 -12.03758 -11.98046 -11.93971 -11.83804 -11.48633 -11.46062 -11.38778 -11.09143 -10.92567 -10.83671 -10.67938 -10.60241 -10.49840 -10.29505 -10.09296 -9.52521 -9.42795 -8.77141 -8.63418 -8.54045 -8.24826 -6.34351 -4.42057 0.36700 1.35112 2.30438 2.54403 3.04436 3.16859 3.25276 3.28925 3.65566 3.82766 4.21591 4.30270 4.53336 4.79159 4.87285 4.91694 4.93310 5.01986 5.20136 5.29607 5.36336 5.41331 5.50651 5.63265 5.75113 5.77032 5.84921 5.91441 5.99711 6.08097 6.11712 6.19042 6.25895 6.48338 6.55646 6.65522 6.72605 6.84720 6.93894 7.28472 7.29743 7.50119 7.69546 7.94141 8.60187 9.27056 9.41473 10.73190 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004436 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.223863 B = 6310.725796 C = 7860.537920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.317 5.317 3 N -0.258 5.258 4 C 0.089 3.911 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.167 4.167 8 C -0.139 4.139 9 C -0.491 4.491 10 S 2.725 3.275 11 O -0.944 6.944 12 O -0.958 6.958 13 N -0.992 5.992 14 C 0.122 3.878 15 C -0.135 4.135 16 C 0.253 3.747 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.132 3.868 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.387 0.613 41 H 0.269 0.731 42 H 0.070 0.930 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 9.028 3.100 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.101 5.101 3 N -0.083 5.083 4 C -0.076 4.076 5 C -0.102 4.102 6 C -0.197 4.197 7 C -0.205 4.205 8 C -0.171 4.171 9 C -0.697 4.697 10 S 2.809 3.191 11 O -0.934 6.934 12 O -0.948 6.948 13 N -0.833 5.833 14 C -0.003 4.003 15 C -0.175 4.175 16 C 0.212 3.788 17 O -0.396 6.396 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.129 4.129 21 N -0.536 5.536 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C 0.008 3.992 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.189 0.811 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.240 0.760 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.706 10.029 3.837 13.824 hybrid contribution 1.899 -0.915 -0.650 2.206 sum -6.807 9.115 3.187 11.814 Atomic orbital electron populations 1.22452 0.73389 1.06921 1.04391 1.47994 1.06078 1.01625 1.54422 1.77104 1.01593 1.08321 1.21319 1.21558 0.92121 0.93127 1.00802 1.20109 0.89151 1.00542 1.00372 1.23084 0.94265 1.00145 1.02175 1.23004 1.03412 1.01017 0.93110 1.21616 0.95759 0.94923 1.04759 1.33912 1.00520 1.17220 1.18051 1.01249 0.72547 0.71931 0.73356 1.93617 1.86122 1.79649 1.33998 1.93524 1.44847 1.86374 1.70021 1.58279 1.42694 1.63417 1.18947 1.21897 1.00429 0.99694 0.78237 1.23209 0.93313 0.98638 1.02332 1.19562 0.87765 0.83525 0.87979 1.86020 1.56953 1.35566 1.61013 1.21498 1.13562 1.15587 1.06912 0.91531 1.24968 0.97135 0.96412 0.94337 1.69550 1.33515 1.40252 1.10302 0.86421 0.80031 0.81796 0.78745 1.20494 1.21082 1.19662 1.22322 0.83471 0.96744 0.96706 0.90008 0.88184 0.86902 0.86218 0.87490 0.87809 0.88253 0.88706 0.81112 0.92105 0.92569 0.89854 0.91251 0.76006 0.92051 0.91204 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.26 59.85 0.67 1.50 16 2 N -0.32 -5.11 4.01 -67.26 -0.27 -5.38 16 3 N -0.26 -4.32 12.58 33.67 0.42 -3.90 16 4 C 0.09 1.43 6.85 -82.40 -0.56 0.87 16 5 C -0.08 -1.06 6.33 -91.77 -0.58 -1.64 16 6 C -0.16 -1.88 10.02 -26.73 -0.27 -2.15 16 7 C -0.17 -1.85 10.23 -26.73 -0.27 -2.12 16 8 C -0.14 -2.38 9.98 -40.01 -0.40 -2.78 16 9 C -0.49 -8.39 6.90 -17.22 -0.12 -8.51 16 10 S 2.73 46.82 5.85 -107.50 -0.63 46.19 16 11 O -0.94 -18.00 17.60 -57.17 -1.01 -19.00 16 12 O -0.96 -16.64 15.37 -57.17 -0.88 -17.52 16 13 N -0.99 -17.80 3.63 -111.42 -0.40 -18.20 16 14 C 0.12 2.16 6.99 -3.06 -0.02 2.14 16 15 C -0.14 -2.72 5.64 -24.89 -0.14 -2.86 16 16 C 0.25 5.53 0.89 -89.63 -0.08 5.45 16 17 O -0.58 -13.14 13.18 -35.23 -0.46 -13.60 16 18 C -0.54 -12.91 8.25 -34.44 -0.28 -13.19 16 19 H 0.07 1.59 7.77 -52.49 -0.41 1.18 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.90 -21.78 10.79 55.43 0.60 -21.18 16 22 Si 0.90 19.20 29.54 -169.99 -5.02 14.17 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 C 0.13 2.57 6.16 -2.53 -0.02 2.55 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 1.35 5.82 -51.92 -0.30 1.05 16 30 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.11 1.40 7.16 -51.93 -0.37 1.03 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.17 2.93 7.40 -52.49 -0.39 2.54 16 36 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.77 7.85 -51.93 -0.41 1.36 16 39 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 40 H 0.39 9.09 6.93 45.56 0.32 9.41 16 41 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.50 8.01 -51.93 -0.42 1.09 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -28.70 369.22 -9.59 -38.29 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.33 Total: 13.62 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.17 Total: -19.06 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.35 Total: -48.66 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -2.35 Total: -50.12 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.63 Total: 46.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.70 -9.59 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907258873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.856 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds