Wall clock time and date at job start Tue Mar 31 2020 23:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40084 * 126.04151 * 2 1 4 4 C 1.30832 * 108.21053 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.90502 * 179.97438 * 4 3 2 6 6 C 1.53001 * 117.50382 * 163.59304 * 5 4 3 7 7 C 1.52999 * 60.00213 * 252.51601 * 6 5 4 8 8 C 1.39881 * 108.20045 * 359.77416 * 4 3 2 9 9 C 1.34952 * 126.03645 * 180.02562 * 2 1 3 10 10 S 1.76202 * 126.12333 * 359.94265 * 9 2 1 11 11 O 1.42100 * 106.40503 * 336.46080 * 10 9 2 12 12 O 1.42106 * 106.39768 * 203.53762 * 10 9 2 13 13 N 1.65595 * 107.21762 * 90.00154 * 10 9 2 14 14 C 1.47031 * 125.64931 * 90.02189 * 13 10 9 15 15 C 1.54327 * 107.26879 * 181.01326 * 14 13 10 16 16 C 1.55156 * 102.94181 * 22.19441 * 15 14 13 17 17 O 1.42894 * 111.00574 * 82.60966 * 16 15 14 18 18 C 1.50699 * 111.00027 * 206.42184 * 16 15 14 19 19 H 1.08004 * 119.99932 * 118.54560 * 18 16 15 20 20 C 1.37878 * 120.00309 * 298.54574 * 18 16 15 21 21 N 1.31519 * 119.99749 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 120.00293 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46901 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47093 * 120.00048 * 22 20 18 25 25 H 1.48497 * 109.47193 * 240.00054 * 22 20 18 26 26 C 1.47422 * 125.64931 * 269.96766 * 13 10 9 27 27 H 1.09002 * 109.46962 * 269.98265 * 1 2 3 28 28 H 1.09002 * 109.46931 * 29.97295 * 1 2 3 29 29 H 1.08990 * 109.47459 * 149.97960 * 1 2 3 30 30 H 1.08995 * 115.54814 * 309.31284 * 5 4 3 31 31 H 1.09001 * 117.49207 * 0.02562 * 6 5 4 32 32 H 1.08991 * 117.49814 * 145.02147 * 6 5 4 33 33 H 1.09003 * 117.49638 * 252.50832 * 7 6 5 34 34 H 1.08994 * 117.50034 * 107.49065 * 7 6 5 35 35 H 1.07992 * 126.03829 * 180.23148 * 8 4 3 36 36 H 1.08998 * 109.88059 * 61.59691 * 14 13 10 37 37 H 1.08994 * 109.87878 * 300.42970 * 14 13 10 38 38 H 1.09001 * 110.71763 * 140.55775 * 15 14 13 39 39 H 1.08997 * 110.72099 * 263.64813 * 15 14 13 40 40 H 0.96706 * 114.00313 * 61.45445 * 17 16 15 41 41 H 0.96999 * 120.00107 * 179.97438 * 21 20 18 42 42 H 1.09000 * 110.36378 * 37.08028 * 26 13 10 43 43 H 1.09001 * 110.46274 * 274.80204 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 4.7498 1.6235 -0.0013 6 6 6.0897 0.9918 0.3814 7 6 5.3896 1.9467 1.3504 8 6 3.5437 -0.6667 0.0043 9 6 2.2589 -1.0913 -0.0005 10 16 1.7191 -2.7686 0.0002 11 8 0.4070 -2.7676 0.5457 12 8 2.7864 -3.5333 0.5438 13 7 1.5677 -3.2354 -1.5814 14 6 2.6265 -3.8434 -2.4005 15 6 2.0372 -4.0833 -3.8065 16 6 0.8560 -3.0790 -3.8642 17 8 1.3116 -1.7723 -4.2205 18 6 -0.2109 -3.5542 -4.8165 19 1 -1.2066 -3.7607 -4.4525 20 6 0.0839 -3.7254 -6.1525 21 7 1.2965 -3.4744 -6.5956 22 14 -1.2388 -4.3137 -7.3330 23 1 -2.5076 -4.5229 -6.5904 24 1 -1.4477 -3.2928 -8.3911 25 1 -0.8129 -5.5925 -7.9563 26 6 0.3486 -3.1112 -2.4009 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5141 30 1 4.7599 2.4037 -0.7623 31 1 6.0923 -0.0687 0.6334 32 1 6.9816 1.3563 -0.1280 33 1 5.8211 2.9394 1.4785 34 1 4.9317 1.5146 2.2401 35 1 4.4210 -1.2964 0.0087 36 1 2.9362 -4.7918 -1.9615 37 1 3.4787 -3.1671 -2.4662 38 1 2.7740 -3.8569 -4.5772 39 1 1.6805 -5.1085 -3.9054 40 1 1.7271 -1.7247 -5.0924 41 1 1.5041 -3.5952 -7.5354 42 1 -0.1771 -2.1869 -2.1613 43 1 -0.3046 -3.9697 -2.2448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907258874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:28 Heat of formation + Delta-G solvation = -8.916777 kcal Electronic energy + Delta-G solvation = -28895.598332 eV Core-core repulsion = 24877.910184 eV Total energy + Delta-G solvation = -4017.688148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31037 -38.18113 -37.40631 -37.11466 -35.82806 -34.36886 -32.96953 -32.27774 -30.52469 -29.34120 -28.40564 -26.95736 -24.95362 -23.42728 -22.75861 -22.06945 -21.50577 -20.00648 -19.67568 -18.68000 -17.91557 -17.29770 -17.04423 -15.96573 -15.67369 -15.47477 -15.10873 -15.01641 -14.58017 -14.48836 -14.23488 -13.94554 -13.45943 -13.06859 -12.84212 -12.75207 -12.52924 -12.31751 -12.11449 -11.97501 -11.89808 -11.86968 -11.68158 -11.56908 -11.40108 -11.11358 -10.97843 -10.87691 -10.79833 -10.56997 -10.49163 -10.42595 -10.08771 -9.56350 -9.43960 -8.77433 -8.67571 -8.53360 -8.27547 -6.33765 -4.42222 0.35963 1.31875 2.33089 2.45588 3.13586 3.15187 3.24853 3.28695 3.64956 3.77869 4.19243 4.22209 4.36035 4.70357 4.75125 4.85029 4.92011 5.11824 5.22235 5.27356 5.33131 5.40125 5.46385 5.49949 5.63054 5.71236 5.77302 5.84853 5.92420 5.94031 5.96836 6.09604 6.24167 6.44985 6.47639 6.63478 6.72103 6.84652 6.92320 7.26271 7.31825 7.48765 7.68092 7.95699 8.60525 9.24293 9.32851 10.73558 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.003681 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.935699 B = 7604.252523 C = 8068.592945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.303 5.303 3 N -0.252 5.252 4 C 0.085 3.915 5 C -0.078 4.078 6 C -0.166 4.166 7 C -0.166 4.166 8 C -0.152 4.152 9 C -0.482 4.482 10 S 2.722 3.278 11 O -0.953 6.953 12 O -0.945 6.945 13 N -0.996 5.996 14 C 0.119 3.881 15 C -0.132 4.132 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.135 3.865 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.382 0.618 41 H 0.268 0.732 42 H 0.063 0.937 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 5.566 10.866 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.087 5.087 3 N -0.078 5.078 4 C -0.080 4.080 5 C -0.098 4.098 6 C -0.203 4.203 7 C -0.204 4.204 8 C -0.184 4.184 9 C -0.690 4.690 10 S 2.806 3.194 11 O -0.943 6.943 12 O -0.934 6.934 13 N -0.837 5.837 14 C -0.005 4.005 15 C -0.171 4.171 16 C 0.209 3.791 17 O -0.392 6.392 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.011 3.989 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.483 6.252 12.140 14.372 hybrid contribution 0.303 -0.416 -1.690 1.766 sum 4.786 5.836 10.450 12.891 Atomic orbital electron populations 1.22326 0.72594 1.05870 1.04644 1.48078 1.06437 1.01567 1.52570 1.77134 1.01420 1.08560 1.20701 1.21484 0.92268 0.92886 1.01325 1.20118 0.88784 1.00505 1.00413 1.23052 0.94653 0.99726 1.02895 1.23004 1.03212 1.00885 0.93288 1.21303 0.95417 0.94697 1.06956 1.33941 1.00218 1.17345 1.17457 1.01337 0.73468 0.72405 0.72148 1.93569 1.37584 1.86652 1.76471 1.93586 1.56951 1.66412 1.76468 1.58443 1.21608 1.73874 1.29742 1.21936 0.89013 0.96219 0.93372 1.23173 1.00372 1.01396 0.92193 1.19622 0.90394 0.80702 0.88391 1.86110 1.81229 1.31449 1.40453 1.21489 0.97323 1.45720 0.93042 0.91595 1.24987 0.95687 0.94012 0.98260 1.69725 1.19033 1.48642 1.15825 0.86379 0.81720 0.78361 0.80596 1.19569 1.20848 1.20818 1.22256 0.84517 1.00711 0.91452 0.89405 0.88384 0.88057 0.85968 0.88056 0.87827 0.88116 0.88643 0.82242 0.92013 0.92516 0.89522 0.91178 0.76854 0.92249 0.91876 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.54 59.85 0.63 1.80 16 2 N -0.30 -5.04 4.01 -67.26 -0.27 -5.31 16 3 N -0.25 -4.27 12.57 33.67 0.42 -3.84 16 4 C 0.08 1.30 6.85 -82.40 -0.56 0.73 16 5 C -0.08 -0.91 6.33 -91.77 -0.58 -1.49 16 6 C -0.17 -1.53 10.02 -26.73 -0.27 -1.79 16 7 C -0.17 -1.55 10.23 -26.73 -0.27 -1.83 16 8 C -0.15 -2.39 9.86 -40.01 -0.39 -2.78 16 9 C -0.48 -8.10 7.00 -17.22 -0.12 -8.23 16 10 S 2.72 46.34 5.89 -107.50 -0.63 45.71 16 11 O -0.95 -16.82 15.36 -57.17 -0.88 -17.70 16 12 O -0.94 -17.15 17.43 -57.17 -1.00 -18.14 16 13 N -1.00 -18.00 3.70 -111.42 -0.41 -18.41 16 14 C 0.12 2.13 6.99 -3.06 -0.02 2.11 16 15 C -0.13 -2.71 5.38 -24.90 -0.13 -2.84 16 16 C 0.25 5.63 0.87 -89.62 -0.08 5.55 16 17 O -0.58 -13.90 13.16 -35.23 -0.46 -14.37 16 18 C -0.54 -13.20 8.27 -34.44 -0.28 -13.49 16 19 H 0.07 1.61 7.79 -52.48 -0.41 1.20 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 21 N -0.89 -22.15 10.76 55.43 0.60 -21.55 16 22 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.13 2.65 6.16 -2.53 -0.02 2.64 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.41 5.57 -51.93 -0.29 1.12 16 30 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.10 0.94 7.15 -51.93 -0.37 0.57 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.16 2.16 7.39 -52.49 -0.39 1.78 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16 39 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 40 H 0.38 9.24 7.57 45.56 0.34 9.59 16 41 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 42 H 0.06 1.19 7.03 -51.93 -0.37 0.83 16 43 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -29.59 367.08 -9.54 -39.13 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.22 Total: 12.39 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.20 Total: -17.90 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.34 Total: -49.11 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.34 Total: -50.21 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.63 Total: 45.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.59 -9.54 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907258874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.212 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds