Wall clock time and date at job start Tue Mar 31 2020 23:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38772 * 125.59535 * 2 1 4 4 C 1.46290 * 125.55464 * 359.96013 * 3 2 1 5 5 O 1.21668 * 119.99919 * 179.97438 * 4 3 2 6 6 O 1.34938 * 120.00171 * 359.97438 * 4 3 2 7 7 C 1.42896 * 116.99893 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47199 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47490 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99725 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99879 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99974 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00337 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47308 * 89.99647 * 13 11 9 15 15 H 1.48497 * 109.47436 * 209.99764 * 13 11 9 16 16 H 1.48504 * 109.47058 * 329.99702 * 13 11 9 17 17 C 1.36434 * 108.89360 * 179.97438 * 3 2 1 18 18 C 1.40623 * 107.59902 * 0.02562 * 17 3 2 19 19 C 1.36624 * 125.59695 * 179.97438 * 2 1 3 20 20 N 1.33014 * 133.26104 * 0.03068 * 19 2 1 21 21 C 1.33043 * 121.50678 * 179.97438 * 20 19 2 22 22 C 1.40917 * 119.02862 * 179.97438 * 21 20 19 23 23 C 1.36158 * 119.54270 * 179.97438 * 22 21 20 24 24 C 1.40302 * 119.62592 * 359.80312 * 23 22 21 25 25 C 1.35069 * 120.13943 * 0.46886 * 24 23 22 26 26 N 1.36465 * 120.77389 * 359.47843 * 25 24 23 27 27 C 1.35200 * 119.26363 * 180.27597 * 26 25 24 28 28 O 1.21844 * 120.72282 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47172 * 270.03007 * 1 2 3 30 30 H 1.09002 * 109.47063 * 30.02458 * 1 2 3 31 31 H 1.08997 * 109.47047 * 150.01955 * 1 2 3 32 32 H 1.09000 * 109.47177 * 299.99454 * 7 6 4 33 33 H 1.09000 * 109.47770 * 60.00336 * 7 6 4 34 34 H 1.09005 * 109.46868 * 299.99851 * 8 7 6 35 35 H 1.09005 * 109.47102 * 59.99276 * 8 7 6 36 36 H 0.96993 * 120.00313 * 179.97438 * 12 11 9 37 37 H 1.07994 * 126.20420 * 180.02562 * 17 3 2 38 38 H 1.08000 * 120.22730 * 359.97223 * 22 21 20 39 39 H 1.07998 * 120.18619 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.93005 * 180.24975 * 24 23 22 41 41 H 1.08002 * 119.61570 * 179.76172 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2727 1.1284 0.0000 4 6 1.8001 2.5129 -0.0008 5 8 2.6007 3.4290 -0.0003 6 8 0.4762 2.7738 -0.0022 7 6 0.0860 4.1485 -0.0035 8 6 -1.4410 4.2452 -0.0043 9 6 -1.8526 5.6949 -0.0051 10 1 -1.1003 6.4698 -0.0054 11 6 -3.1895 6.0319 -0.0064 12 7 -3.5488 7.2971 -0.0076 13 14 -4.4907 4.6916 -0.0065 14 1 -4.8366 4.3373 1.3935 15 1 -5.7049 5.1805 -0.7078 16 1 -3.9650 3.4914 -0.7054 17 6 3.5795 0.7363 0.0006 18 6 3.6015 -0.6697 0.0004 19 6 2.2603 -1.1109 0.0005 20 7 2.0032 -2.4160 0.0006 21 6 2.9818 -3.3174 0.0006 22 6 2.6499 -4.6869 0.0012 23 6 3.6431 -5.6183 0.0007 24 6 4.9833 -5.2032 -0.0046 25 6 5.2855 -3.8868 0.0004 26 7 4.2990 -2.9439 -0.0001 27 6 4.6361 -1.6346 -0.0007 28 8 5.8057 -1.2930 -0.0013 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 0.4802 4.6389 0.8865 33 1 0.4818 4.6378 -0.8935 34 1 -1.8357 3.7546 -0.8942 35 1 -1.8365 3.7560 0.8859 36 1 -4.4892 7.5342 -0.0089 37 1 4.4409 1.3877 0.0011 38 1 1.6150 -4.9956 0.0021 39 1 3.4006 -6.6707 0.0016 40 1 5.7749 -5.9378 -0.0090 41 1 6.3200 -3.5766 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913266811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:32 Heat of formation + Delta-G solvation = -1.769466 kcal Electronic energy + Delta-G solvation = -28238.315856 eV Core-core repulsion = 24085.493687 eV Total energy + Delta-G solvation = -4152.822169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.13286 -41.25858 -39.76573 -38.69520 -36.60804 -36.35729 -34.34559 -33.40291 -33.11626 -31.23542 -30.75941 -29.23450 -27.26291 -26.33385 -24.98495 -24.29044 -23.52562 -22.47074 -20.77317 -20.03869 -19.69439 -19.27897 -17.90942 -17.54088 -17.11589 -16.78862 -16.53075 -16.33927 -16.01931 -15.82671 -15.31036 -15.24890 -14.76260 -14.44014 -14.17145 -13.89106 -13.72429 -13.51153 -13.31595 -12.97944 -12.91506 -12.66051 -12.50829 -12.23873 -11.77108 -11.51417 -11.32135 -11.13177 -10.87619 -10.83111 -10.75945 -10.32594 -10.13024 -9.99854 -9.76597 -9.49137 -9.39876 -9.24410 -8.66551 -7.64825 -6.16489 -4.18015 -0.31185 0.28595 1.12320 1.67755 1.76943 2.03289 2.33144 2.91807 3.08089 3.23450 3.31202 3.33337 3.42738 3.54861 3.83593 4.01091 4.21456 4.33059 4.33939 4.46568 4.58383 4.83924 4.92801 4.98717 5.16525 5.19847 5.24595 5.36176 5.46205 5.47103 5.54362 5.68522 5.83173 5.89382 5.91366 5.98380 6.07943 6.37439 6.44613 6.58425 6.67010 7.08319 7.14063 7.26017 7.38991 7.57445 7.97455 8.35912 8.85553 9.42461 10.96078 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.002308 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.475429 B =12128.909182 C =13315.632078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.412 5.412 3 C -0.007 4.007 4 C 0.532 3.468 5 O -0.493 6.493 6 O -0.354 6.354 7 C 0.079 3.921 8 C -0.007 4.007 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.895 5.895 13 Si 0.882 3.118 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.016 4.016 18 C -0.308 4.308 19 C 0.345 3.655 20 N -0.538 5.538 21 C 0.420 3.580 22 C -0.138 4.138 23 C -0.033 4.033 24 C -0.182 4.182 25 C 0.109 3.891 26 N -0.450 5.450 27 C 0.564 3.436 28 O -0.509 6.509 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.592 -31.856 -0.089 35.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.093 5.093 3 C -0.113 4.113 4 C 0.376 3.624 5 O -0.381 6.381 6 O -0.271 6.271 7 C 0.006 3.994 8 C -0.045 4.045 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.533 5.533 13 Si 0.708 3.292 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.041 4.041 18 C -0.319 4.319 19 C 0.110 3.890 20 N -0.266 5.266 21 C 0.171 3.829 22 C -0.159 4.159 23 C -0.057 4.057 24 C -0.204 4.204 25 C -0.013 4.013 26 N -0.158 5.158 27 C 0.366 3.634 28 O -0.385 6.385 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 14.065 -30.894 -0.092 33.945 hybrid contribution -0.147 -0.121 0.052 0.197 sum 13.918 -31.015 -0.041 33.995 Atomic orbital electron populations 1.22452 0.74125 1.05938 1.04796 1.44020 1.07299 1.02381 1.55550 1.19173 0.89527 0.84065 1.18520 1.19518 0.82032 0.86905 0.73971 1.90931 1.56090 1.45020 1.46058 1.86156 1.23506 1.34158 1.83294 1.23090 0.98671 0.75563 1.02091 1.19632 0.88252 0.98815 0.97761 1.20831 0.93426 0.89871 1.52454 0.90574 1.24947 0.98477 0.95474 0.94161 1.69891 1.17163 1.16340 1.49936 0.86750 0.81187 0.82538 0.78686 1.20071 1.21155 1.18833 1.20531 0.94936 0.92118 0.96545 1.19107 0.91829 0.95300 1.25626 1.18142 0.87661 0.86518 0.96664 1.67631 1.29526 0.98952 1.30479 1.20029 0.77238 0.94860 0.90823 1.20893 1.02299 0.86993 1.05747 1.21488 0.91929 1.00944 0.91314 1.20938 0.98099 0.94396 1.06949 1.22289 0.95238 0.88774 0.95000 1.44058 1.07701 1.09386 1.54684 1.16365 0.89460 0.79945 0.77679 1.90914 1.19230 1.78677 1.49658 0.89860 0.87152 0.89030 0.91599 0.91578 0.95440 0.95836 0.92396 0.81619 0.81777 0.83149 0.82553 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.55 59.85 0.63 1.41 16 2 N -0.41 -5.73 3.22 -119.53 -0.38 -6.12 16 3 C -0.01 -0.12 6.82 -82.14 -0.56 -0.68 16 4 C 0.53 9.42 7.90 33.97 0.27 9.69 16 5 O -0.49 -9.83 16.62 -19.39 -0.32 -10.16 16 6 O -0.35 -6.46 7.45 -41.15 -0.31 -6.77 16 7 C 0.08 1.63 5.32 37.16 0.20 1.83 16 8 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 9 C -0.53 -14.75 9.66 -34.44 -0.33 -15.08 16 10 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 13 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 17 C -0.02 -0.24 10.52 -39.33 -0.41 -0.65 16 18 C -0.31 -4.39 6.13 -106.64 -0.65 -5.05 16 19 C 0.34 4.70 7.92 -155.97 -1.24 3.46 16 20 N -0.54 -6.31 10.32 -11.42 -0.12 -6.43 16 21 C 0.42 3.91 7.34 -155.79 -1.14 2.77 16 22 C -0.14 -0.72 9.95 -39.32 -0.39 -1.11 16 23 C -0.03 -0.08 10.07 -39.55 -0.40 -0.48 16 24 C -0.18 -0.53 9.99 -39.93 -0.40 -0.93 16 25 C 0.11 0.66 10.07 -16.62 -0.17 0.50 16 26 N -0.45 -4.39 2.78 -64.79 -0.18 -4.57 16 27 C 0.56 7.42 7.41 -14.84 -0.11 7.31 16 28 O -0.51 -7.57 16.68 5.06 0.08 -7.49 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 1.40 6.09 -51.93 -0.32 1.08 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 33 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 34 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 35 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.15 -0.10 8.06 -52.49 -0.42 -0.52 16 40 H 0.16 -0.02 8.06 -52.49 -0.42 -0.44 16 41 H 0.18 0.93 7.32 -52.49 -0.38 0.55 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -35.31 358.01 -9.09 -44.39 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.43 Total: -2.91 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -4.93 Total: 4.65 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.09 Total: -43.38 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.54 Total: -24.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.31 -9.09 -44.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913266811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.625 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds